Identification of key performance indicators for on-farm animal welfare incidents: possible tools for early warning and prevention

Background

The objective of this study was to describe aspects of case study herds investigated by the Department of Agriculture, Fisheries and Food (DAFF) in which animal welfare incidents occurred and to identify key performance indicators (KPIs) that can be monitored to enhance the Early Warning System (EWS). Despite an EWS being in place for a number of years, animal welfare incidents continue to occur. Questionnaires regarding welfare incidents were sent to Superintending Veterinary Inspectors (SVIs), resulting in 18 herds being chosen as case study herds, 12 of which had a clearly defined welfare incident date. For each study herd, data on six potential KPIs were extracted from DAFF databases. The KPIs for those herds with a clearly defined welfare incident date were studied for a consecutive four year window, with the fourth year being the ''incident year'', when the welfare incident was disclosed. For study herds without a clearly defined welfare incident date, the KPIs were determined on a yearly basis between 2001 and 2009.

Results

We found that the late registration of calves, the use of on-farm burial as a method of carcase disposal, an increasing number of moves to knackeries over time and records of animals moved to ''herd unknown'' were notable on the case farms.

Conclusion

Four KPIs were prominent on the case study farms and warrant further investigation in control herds to determine their potential to provide a framework for refining current systems of early warning and prevention.     

Epidemiology and cost of Lyme disease‐related hospitalizations among patients with employer‐sponsored health insurance—United States, 2005–2014

An estimated 300,000 cases of Lyme disease occur in the United States annually. Disseminated Lyme disease may result in carditis, arthritis, facial palsy or meningitis, sometimes requiring hospitalization. We describe the epidemiology and cost of Lyme disease‐related hospitalizations. We analysed 2005–2014 data from the Truven Health Analytics MarketScan Commercial Claims and Encounters Databases to identify inpatient records associated with Lyme disease based on International Classification of Diseases, Ninth Revision, Clinical Modification (ICD‐9‐CM) codes. We estimated the annual number and median cost of Lyme disease‐related hospitalizations in the United States in persons under 65 years of age. Costs were adjusted to reflect 2016 dollars. Of 20,983,165 admission records contained in the inpatient databases during the study period, 2,823 (0.01%) met inclusion criteria for Lyme disease‐related hospitalizations. Over half of the identified records contained an ICD‐9‐CM code for meningitis (n = 614), carditis (n = 429), facial palsy (n = 400) or arthritis (n = 377). Nearly 60% of hospitalized patients were male. The median cost per Lyme disease‐related hospitalization was $11,688 (range: $140–$323,613). The manifestation with the highest median cost per stay was carditis ($17,461), followed by meningitis ($15,177), arthritis ($13,012) and facial palsy ($10,491). Median cost was highest among the 15‐ to 19‐year‐old age group ($12,991). Admissions occurring in January had the highest median cost ($13,777) for all study years. Based on extrapolation to the U.S. population, we estimate that 2,196 Lyme disease‐related hospitalizations in persons under 65 years of age occur annually with an estimated annual cost of $25,826,237. Lyme disease is usually treated in an outpatient setting; however, some patients with Lyme disease require hospitalization, underscoring the need for effective prevention methods to mitigate these serious cases. Information from this analysis can aid economic evaluations of interventions that prevent infection and advances in disease detection.     

Lipophilic Toxins in Wild Bivalves from the Southern Gulf of California,Mexico

Most of the shellfish fisheries of Mexico occur in the Gulf of California. In this region, known for its high primary productivity, blooms of diatoms and dinoflagellates are common, occurring mainly during upwelling events. Dinoflagellates that produce lipophilic toxins are present, where some outbreaks related to okadaic acid and dinophisystoxins have been recorded. From January 2015 to November 2017 samples of three species of wild bivalve mollusks were collected monthly in five sites in the southern region of Bahía de La Paz. Pooled tissue extracts were analyzed using LC-MS/MS to detect lipophilic toxins. Eighteen analogs of seven toxin groups, including cyclic imines were identified, fortunately individual toxins did not exceed regulatory levels and also the total toxin concentration for each bivalve species was lower than the maximum permitted level for human consumption. Interspecific differences in toxin number and concentration were observed in three species of bivalves even when the samples were collected at the same site. Okadaic acid was detected in low concentrations, while yessotoxins and gymnodimines had the highest concentrations in bivalve tissues. Although in low quantities, the presence of cyclic imines and other lipophilic toxins in bivalves from the southern Gulf of California was constant.     

Co-amelioration of red soil acidity and fertility with pig manure rather than liming

Lime (calcium oxide), animal manure and crop straw soil treatments have been shown to ameliorate soil acidity, yet their effectiveness at concurrently enhancing soil fertility status and improving crop yields is less well understood. In this study, an acidic nutrient deficient red soil (Ferralic Cambisol) received these treatments at various dosage rates (% of DW soil) in pot experiments with maize plants. Lime was applied at four dosage rates (0.05%, 0.10%, 0.15% and 0.20%), pig manure at three rates (0.50%, 1.00% and 1.50%), maize straw or milk vetch at two rates (0.50% and 1.00%) and combinations of lime (0.10% or 0.15%) with maize straw (0.50%) and/or pig manure (0.50%). Soils treated with and without chemical fertilizers were also included as controls. Measurements of soil pH, exchangeable acidity, plant available nutrients and maize shoot biomass were recorded. Maize shoot biomass increased by 4.7–7.6 times under pig manure treatments, 1.1–1.6 times under milk vetch, 0.4–1.5 times under lime and 1.1–6.2 times under combination treatments, compared with the control. Soil pH increased by 0.5–0.9 units under lime, by 0.2–0.4 units under pig manure and by 0.7 pH units under the combination treatment relative to the control. Variance partitioning analysis showed that on an individual basis, soil acidity amelioration (pH, exchangeable H⁺ and Al³⁺) or nutrient input (C, N, P, K, Ca, Mg, Zn) explained only 4.3% and 5.6% of improved maize growth, respectively. Whereas, their interaction explained 85.9% of the variation. We also report that the over-application of pig manure could lead to P saturation and negative impacts on aquatic systems in the wider environment. Therefore, we recommend a combination of lime, pig manure and straw provides an optimal solution for addressing soil acidity and limiting P saturation in acid soils.     

Optimum Nutrient Concentrations and CND Scores of Mature White Spruce Determined Using a Boundary-Line Approach and Spatial Variation of Tree Growth and Nutrition

ABSTRACT

Standards of optimum nutrition are not readily available for mature trees of the Canadian boreal forest. The objective of this study was to determine foliar nutritional standards for white spruce for all major nutrients [nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), magnesium (Mg), and manganese (Mn)] using critical values (CVA) and compositional nutrient diagnosis (CND). Trees were sampled at two locations in Ontario and Quebec to cover a gradient of soil fertility levels. A boundary-line approach was used in combination with quadratic regression models to estimate the relationship between growth and foliar-nutrient concentrations or CND scores when free of the effects of interacting environmental factors. White spruce optimum nutrition ranges were computed from significant relationships (P ≤ 0.10) for N, P, K, Ca, and Mn concentrations and for N, P, and K CND scores. Optimum concentrations for first-year needles were 12.3, 1.9, 7.3, 6.5, and 0.39 mg g^?1 for N, P, K Ca, and Mn, respectively, whereas optimum CND scores were 0.17, ?1.65, ?0.40, and ?0.30 for N, P, K, and Ca, respectively. Samples from a broader range of environmental conditions will be required in order to establish standards for all major nutrients and to ascertain toxicity levels of most nutrients.     

Measurement of genetic and environmental variation in barley (Hordeum vulgare) grain hardness

In this study, we assessed a broad range of barley breeding lines and commercial varieties by three hardness methods (two particle size methods and one crush resistance method (SKCS—Single-Kernel Characterization System), grown at multiple sites to see if there was variation in barley hardness and if that variation was genetic or environmentally controlled. We also developed near-infrared reflectance (NIR) calibrations for these three hardness methods to ascertain if NIR technology was suitable for rapid screening of breeding lines or specific populations. In addition, we used this data to identify genetic regions that may be associated with hardness. There were significant (p<0.05) genetic effects for the three hardness methods. There were also environmental effects, possibly linked to the effect of protein on hardness, i.e. increasing protein resulted in harder grain. Heritability values were calculated at >85% for all methods. The NIR calibrations, with R² values of >90%, had Standard Error of Prediction values of 0.90, 72 and 4.0, respectively, for the three hardness methods. These equations were used to predict hardness values of a mapping population which resulted in genetic markers being identified on all chromosomes but chromosomes 2H, 3H, 5H, 6H and 7H had markers with significant LOD scores. The two regions on 5H were on the distal end of both the long and short arms. The region that showed significant LOD score was on the long arm. However, the region on the short arm associated with the hardness (hordoindoline) genes did not have significant LOD scores. The results indicate that barley hardness is influenced by both genotype and environment and that the trait is heritable, which would allow breeders to develop very hard or soft varieties if required. In addition, NIR was shown to be a reliable tool for screening for hardness. While the data set used in this study has a relatively low variation in hardness, the tools developed could be applied to breeding populations that have large variation in barley grain hardness.     

Assessing progenies of potato for resistance to skin spot (Polyscytalum pustulans) in the glasshouse

Summary Crosses were made between six parents differing in susceptibility to skin spot and glasshouse-grown tubers from true seedlings of the nine resulting progenies assessed for resistance to the disease. The assessment was evaluated by a two-year comparison with the behaviour of field-grown tubers of the progenies and their parents. The correlations between progenies in the glasshouse and field were r=0.911 and 0.753 and those between the mid-parental values and the progeny means were high (r>0.864), indicating that parental differences were heritable. It is concluded that correlations were sufficient for glasshouse-grown tubers to be used for assessing large numbers of progenies in genetical studies and for eliminating highly susceptible progenies at an early stage in a breeding programme. R.L. Wastie died 16.01.96.     

The importance of comparative phylogeography in diagnosing introduced species: a lesson from the seal salamander, <Emphasis Type="Italic">Desmognathus monticola</Emphasis>

Background  

In most regions of the world human influences on the distribution of flora and fauna predate complete biotic surveys. In some cases this challenges our ability to discriminate native from introduced species. This distinction is particularly critical for isolated populations, because relicts of native species may need to be conserved, whereas introduced species may require immediate eradication. Recently an isolated population of seal salamanders, Desmognathus monticola, was discovered on the Ozark Plateau, ~700 km west of its broad continuous distribution in the Appalachian Mountains of eastern North America. Using Nested Clade Analysis (NCA) we test whether the Ozark isolate results from population fragmentation (a natural relict) or long distance dispersal (a human-mediated introduction).