Aberrant Promoter Methylation Profile of Niemann-Pick Type C1 Gene in Cardiovascular Disease

Background: The protein of Niemann-pick type C1 (NPC1) gene promotes the egress of cholesterol from late endosomes and lysosomes to other cellular compartments and contributes to a process known as reverse cholesterol transport. This study aimed to examine whether promoter methylation of NPC1 is associated with risk of cardiovascular disease (CVD). Methods: Fifty CVD patients and 50 healthy subjects as the control group were recruited in this study. Promoter methylation of NPC1 gene was defined using a nested-methylation specific polymerase chain reaction method. Statistical analyses were done using the chi-square, t-test or ANOVA tests. Results: Our study showed that the frequency of semi-methylated promoter (methylated/unmethylated status) was significantly higher in CVD patients than that in controls (OR = 6.521, 95% CI = 2.211-19.215, P = 0.008). However, a completely methylated promoter (methylated/methylated status) was not detected in any subjects in either of the two groups tested. Additionally, the analysis of clinical data according to the methylation status of NPC1 gene demonstrated that serum levels of total cholesterol, total triglycerides, high low-density lipoprotein cholesterol (LDL-C) and low high-density lipoprotein cholesterol (HDL-C) are influenced by NPC1 methylation, so that subjects with a completely unmethylated promoter (Unmethylated/unmethylated status) held lower levels of total triglycerides, total cholesterol, LDL-C and higher levels of HDL-C. Conclusion: Our findings propose that the NPC1 promoter methylation is a probable mechanism that can result in reduced/impaired NPC1 expression/activity and may thus contribute to progression of CVD. Key Words: Niemann-pick type C1 (NPC1), Promoter methylation, cardiovascular disease     

Optimizing water,nitrogen and crop density in canola cultivation using response surface methodology and central composite design

Abstract

Optimisation of water and nitrogen use is an effective management tool to conserve resources and reduce environmental pollutions. Response surface methodology (RSM) is defined as a collection of mathematical and statistical methods that are used to develop, to improve or to optimize a product or process. In order to determine optimum levels of water, nitrogen and planting density of canola (Brassica napus L.), a 2-year experiment (2010–2011) was carried out by central composite design as RSM at the research station of Ferdowsi University of Mashhad. The treatments were designed based on low and high levels of irrigation (1500 and 4000 m³ ha^?1), nitrogen (0 and 400 kg N ha^?1) and density (50 and 150 plant m^?2) as independent variables. Furthermore, seed yield, nitrogen losses, nitrogen use efficiency (NUE) and water use efficiency (WUE) were measured as response variables in a full quadratic polynomial model. Optimum levels of irrigation, nitrogen and planting density were suggested to achieve the target range of dependent variables based on three scenarios: economic, environmental and eco-environmental. The results showed that increasing irrigation and fertilizer led to an increase in seed yield and nitrogen losses, whereas increasing canola density resulted in an increase in seed yield but a decrease in nitrogen losses. The optimum levels of water, fertilizer and density based on environmental scenario were 1802 m³ ha^?1, 11 kg N ha^?1 and 122 plant m^?2, respectively. To achieve optimum conditions under the economic scenario, it is necessary to use 3411 m³ water ha^?1, 178 kg N ha^?1 and 119 plant m^?2. Amounts of 2347 m³ water ha^?1, 92 kg N ha^?1 and 114 plant m^?2 were found to be the optimum conditions for the eco-environmental scenario. In general, it seems that resource use based on the eco-environmental scenario may be the most favorable cropping strategy for canola production.     

Improvement of Seed Quality of Wheat (Triticum aestivum) as Affected by Brassinolide under Different Irrigation Regimes

Journal of Crop Science and Biotechnology - Irrigation interruption owing to time of incidence is affecting the seed quality. The aim of this research was to determine whether the brassinolide and...     

Designing E1 deleted adenoviral vector by homologous recombination

BACKGROUND: Adenoviruses are used extensively to deliver genes into mammalian cells, particularly where there is a requirement for high-level expression of transgene products in cultured cells, or for use as recombinant viral vaccines or in gene therapy. In spite of their usefulness, the construction of adenoviral vectors (AdV) is a cumbersome and lengthy process that is not readily amenable to the generation of large collection of clones. METHODS: In this project, to delete E1 gene in adenovirus, an adenoviral plasmid containing lateral sites of E1 region of adenovirus was made and recombination in the 293A cells between the homologous region of this linearized plasmid and the adenovirus genome resulted in the formation of the complete adenoviral recombinant. RESULTS: This recombination resulted in loss of E1 region and we constructed a recombinant adenovirus type 5 vector that E1 gene was deleted by homologous recombination. CONCLUSION: Homologous recombination is more easy and fast technique in the production of AdV.     

Effect of growth parameters on structural and optical properties of CdS nanowires prepared by polymer controlled solvothermal route

Cadmium sulfide nanowires were successfully obtained via a poly (ethylene glycol)-assisted solvothermal route. In this procedure, cadmium nitrate and thiourea were used as Cd and S sources, respectively, and polyethylene glycol 400 was used as an inducing soft template to control the one-dimensional growth of CdS nanostructures. The effects of different growth parameters in the solvothermal process such as type of the solvents, reaction time, and temperature on the morphology, structural and optical properties of the products were investigated. The provided structures were characterized by X-ray diffractometery, scanning electron microscopy, and UV-visible absorption spectroscopy. The results show that the as-prepared samples have hexagonal phase and grow into long nanowire shape with increasing the reaction time, temperature and volume ratios of ethylenediamine (en) to H₂O. Uniform sized nanowires with the average diameter of 75 nm and the average length of 2.5 µm were obtained using ethylenediamine solvent at 170 °C for 3 days.     

Pre-treatment effect of different doses of soy isoflavones on spatial learning and memory in an ovariectomized animal model of Alzheimer's disease

The aim of this study was to evaluate the effects of different doses of dietary soy meals (with or without isoflavone) on dementia in ovariectomized (OVX) animal model of Alzheimer's disease. Female Wistar's rats with the exception of intact group were ovariectomized at the first line of study. Animals were divided into 2 main groups: control (c) and pre-treatment groups. Animals in pre-treatment groups received one of five types of diet during four weeks prior Nucleus Basalis Magnocellularis (NBM) electrical lesion normal diet (0), 10 g soy with isoflavone (10), 20 g soy with isoflavone (20), 10 g soy without isoflavone (-10) and 20 g soy without isoflavone (-20) in 30 g daily diet. The spatial learning and memory were tested using Morris water maze after electrical lesion. Rats were trained in water maze to find a hidden escape Platform. Rats received 6 blocks that each block consisted of 3 trials. Following acquisition trials, one probe trial was conducted in which the platform was removed. Soy meal diet (with or without isoflavone) in ovariectomized rats with Alzheimer's disease caused improvement of performance across 18 trials of Acquisition. Our results suggest that soy meal is a potential alternative to estrogen in the prevention and treatment of Alzheimer's disease.     

Effects of chronic high stocking density on liver proteome of rainbow trout (<Emphasis Type="Italic">Oncorhynchus mykiss</Emphasis>)

The main aim of the present study was to assess the effects of chronic high stocking density on liver proteome of rainbow trout. Rainbow trout juveniles (42.6 ± 2.3 g average body weight) were randomly distributed into six tanks at two stocking densities (low stocking density (LD) = 20 kg m^?3 and high stocking density (HD) = 80 kg m^?3). Both treatments were performed in triplicate tanks for a period of 60 days. High stocking density caused a reduction in the growth performance compared with LD fish. Lysozyme activity increased with stocking density, while serum complement activity presented the opposite pattern. Serum cortisol and total protein levels did not show significant differences (P > 0.05) between experimental groups. The fish reared at high stocking density showed significantly lower osmolality and globulin values but higher albumin level. The HD group had significantly higher activities of catalase, glutathione peroxidase and superoxide dismutase, and malondialdehyde content in the liver when compared to the LD group. Comparative proteomics was used to determine the proteomic responses in livers of rainbow trout reared at high stocking density for 60 days. Out of nine protein spots showing altered abundance (>1.5-folds, P < 0.05), eight spots were successfully identified. Two proteins including apolipoprotein A-I-2 precursor and mitochondrial stress-70 protein were found to increase in HD group. The spots found to decrease in the HD group were identified as follows: 2-peptidylprolyl isomerase A, two isoforms of glyceraldehydes-3-phosphate dehydrogenase, an unnamed protein product similar to fructose-bisphosphate aldolase, 78 kDa glucose-regulated protein, and serum albumin 1 protein.     

Analysis of the Phenylpropanoid Enzyme Activities and Products in the Soft- and Hard-Seeded Pomegranate Genotypes During Fruit Development

To find out more about the biochemical aspects of seed-softness trait in pomegranate (Punica granatum L.), some of the phenylpropanoid pathway enzymes as well as their products were evaluated in the various soft- and hard-seeded genotypes during fruit development. Results showed that peroxidase (POD) activity decreased in all studied genotypes during fruit growth, while increasing at the last stages only in the hard-seeded genotypes. Although laccase (LAC) activity did not show high differences during fruit ripening and in different genotypes, but its general trend was increasing. Phenylalanine ammonia-lyase (PAL) activity decreased during the fruit development and approximately diminished for the hard-seeded genotypes. All genotypes had lignin components in their seeds and amount of lignin increased during the growth season. Total phenolic decreased drastically and antioxidant capacity increased gradually showing an opposite trend and probable competitive effect for the same substrate during fruit development. Considerable differences that were observed in the POD activity at the last sampling stage, and higher activity that was observed in POD than LAC, may indicate that POD is more important for polymerization of lignin in the pomegranate seed and this enzyme might have some role in the development of seed softness trait in pomegranate. Also, this is the first report about lignin detection in the seeds of soft-seeded pomegranate genotypes, and represents a different mechanism (such as monolignol conformation in the final polymer) from lignin content for development of the soft-seeded pomegranate genotype.     

Genetic analysis of flowering and maturity time in high latitude spring wheat

Due to the short growing season in the high northern latitudes, the development of early maturing spring wheat (Triticum aestivum L.) cultivars is important to avoid frost damage which can lower production and quality. We investigated earliness of flowering and maturity, and some associated agronomic traits, using a set of randomly selected high northern latitude adapted spring wheat cultivars (differing in maturity) and their F₁ and F₂ crosses made in a one-way diallel mating design. The parents, and their F₁ and F₂ crosses were evaluated under field conditions over 2 years. Anthesis and maturity times were controlled by both vernalization response and earliness per se genes, mainly acting additively. Non-additive genetic effects were more important in controlling grain fill duration, grain yield and plant height. Additive × additive epistatic effects were detected for all traits studied except time to anthesis. Segregation analyses of the F₂ populations for time to anthesis indicated the presence of different vernalization response genes. Molecular genetic analyses revealed the presence of Vrn-A1 and Vrn-B1 genes in the parental cultivars. Narrow-sense heritability was medium to high (60–86%) for anthesis and maturity times but low to medium (13–55%) for grain fill duration, plant height and grain yield. Selection for early flowering/maturity in early segregating generations would be expected to result in genetic improvement towards earliness in high latitude spring wheats. Incorporation of the vernalization responsive gene Vrn-B1 in combination with vernalization non-responsive gene Vrn-A1 into spring wheats would aid in the development of early maturing cultivars with high grain yield potential for the high latitude wheat growing regions of the northern hemisphere.