Molecular characterization and pathogenicity of binucleate Rhizoctonia AG-F associated to the watermelon vine decline in Italy

In recent years, watermelon (Citrullus lanatus) has been subjected to significant losses due to vine decline in Sicily (southern Italy). During a survey conducted in 2009, the predominant fungal species associated with root rot and vine decline were Rhizoctonia spp. The most isolates were characterized as binucleate Rhizoctonia AG-F through morphological observation, nuclear condition, anastomosis tests and sequence homology of rDNA-ITS. Occasionally, R. solani was found. The pathogenicity of binucleate Rhizoctonia and virulences of different isolates were tested in growth chamber on watermelon seedlings. All isolates were pathogenic on watermelon seedlings and showed statistically significant differences on the disease incidence and severity among them. To our knowledge, this is the first report worldwide of the occurrence of pathogenic binucleate Rhizoctonia responsible for root rot and associated with watermelon vine decline.     

Glue barriers reduce earwig damage on apricots in north-western Italy

The European earwig, Forficula auricularia L. (Dermaptera: Forficulidae), is a well-known species that is cosmopolitan and present throughout Europe. Due to its omnivorous feeding behaviour, this species can act as a generalist predator, preying on several top fruit pests, but also as a pest causing shallow gouges or holes in stone and soft fruits such as apricots, strawberries, raspberries or blackberries. In Piedmont (NW Italy), significant fruit damage has been observed lately in apricot orchards where earwigs fed on ripening fruits and made a considerable part of the produce unmarketable. In this study, we sampled earwig populations in three apricot orchards in Piedmont and tested the effectiveness of glue barriers applied to the tree trunks in reducing both earwig density in the canopy and fruit damage. The arboreal glues Rampastop® and Vebicolla® were tested both in the field and laboratory trials. Glue barriers demonstrated to be effective control measures, significantly reducing earwig abundance in the canopy and fruit damage. Rampastop® gave better results on old trees with a very rough and cracked bark, since in that case Vebicolla® could not perfectly bond with the trunk.     

Campylobacter jejuni in the red squirrel (Sciurus vulgaris) population of Southern Italy

Rectal swab samples were collected from 60 red squirrels (Sciurus vulgaris) from July 2006 to April 2007 in Southern Italy. Samples were tested for Campylobacter jejuni and C. coli by culture methods and suspected colonies were then confirmed by polymerase chain reaction. C. jejuni was detected in 5/60 (8.3%) samples examined but infection status was not related to age or sex and C. coli was not isolated. This is believed to be the first report of C. jejuni infection in the red squirrel.     

Assessment of the origin of new citrus tetraploid hybrids (2<Emphasis Type="Italic">n</Emphasis> = 4x) by means of SSR markers and PCR based dosage effects

We report the accurate determination of the allelic configurations of a total of eight new citrus tetraploid hybrids by means of SSR analysis, coupled with capillary electrophoresis, and PCR based dosage effects. Tetraploid hybrids were spontaneously obtained from different interploid crosses (2x × 4x) between diploid ‘Femminello’ lemon and the allotetraploid somatic hybrid (2n = 4x = 36) ‘Key’ lime + ‘Valencia’ orange, and between diploid ‘Wilking’ and ‘Fortune’ mandarins and an autotetraploid ‘Dancy’ mandarin (2n = 4x = 36). To understand the opportunity to employ them in further backcross programs, the cytological mechanisms underlying their ploidy level were unambiguously determined using six SSR primers. PCR conditions were optimized and skewness in template/product ratios were verified. Tetraploid allelic configurations were determined from PCR based dosage effects using electropherogram peak heights to estimate the copy number per allele. In all the tetraploid hybrids we found out that diploginy (2n eggs) has occurred, contributing the extra haploid genome in the tetraploids. According to the marker genotypes, it was further inferred that the 2n eggs in ‘Femminello’ lemon resulted from first division restitution (FDR), while in ‘Wilking’ and ‘Fortune’ mandarins 2n eggs occurred in second division restitution (SDR). These new genotypes, with their improved genetic female background, can be therefore considered very valuable in our citrus genetic improvement program as pollen donors in backcrosses suitable to eliminate negative traits.     

QTLs for barley yield adaptation to Mediterranean environments in the ‘Nure’ × ‘Tremois’ biparental population

Multi-environment trials represent a highly valuable tool for the identification of the genetic bases of crop yield potential and stress adaptation. A Diversity Array Technology^®-based barley map has been developed in the ‘Nure’ × ‘Tremois’ biparental Doubled Haploid population, harbouring the genomic position of a gene set with a putative role in the regulation of flowering time and abiotic stress response in barley. The population has been evaluated in eighteen location-by-year combinations across the Mediterranean basin. QTL mapping identified several genomic regions responsible for barley adaptation to Mediterranean conditions in terms of phenology, grain yield and yield component traits. The most frequently detected yield QTL had the early flowering HvCEN_EPS2 locus (chromosome 2H) as peak marker, showing a positive effect from the early winter parent ‘Nure’ in eight field trials, and explaining up to 45.8 % of the observed variance for grain yield. The HvBM5A_VRN-H1 locus on chromosome 5H and the genomic region possibly corresponding to PPD-H2 on chromosome 1H were significantly associated to grain yield in five and three locations, respectively. Environment-specific QTLs for grain yield, and clusters of yield component QTLs not related to phenology and or developmental genes (e.g. on chromosome 4H, BIN_09) were observed as well. The results of this work provide a valuable source of knowledge and tools for both explaining the genetic bases of barley yield adaptation across the Mediterranean basin, and using QTL-associated markers for MAS pre-breeding and breeding programmes.     

Sustainable sediment management in coastal infrastructures through an innovative technology: preliminary results of the MARINAPLAN PLUS LIFE project

Journal of Soils and Sediments - The paper aims to show the preliminary monitoring and field test results of the innovative technology tested in the framework of the MARINAPLAN PLUS LIFE project...     

Phenolic antioxidants and the protection of low density lipoprotein from peroxynitrite-mediated oxidations at physiologic CO2

Dietary phenolic antioxidants have been shown to prevent LDL modifications mediated by several physiologic oxidants including peroxynitrite. However, more recent data demonstrated that CO(2) affected the fate of peroxynitrite in biological fluids and significantly reduced peroxynitrite scavenging by polyphenols, raising doubts concerning their antioxidant activity. We found that the oxidation of LDL lipids mediated by peroxynitrite decreased in the presence of bicarbonate, while Trp oxidation and 3-nitroTyr formation increased, suggesting a redirection of peroxynitrite reactivity toward the protein moiety. We therefore evaluated the protective activity of some phenolic antioxidants (quercetin, oleuropein, resveratrol, (+)-catechin, (-)-epicatechin, tyrosol, alpha- and gamma-tocopherol, ascorbate) on peroxynitrite-mediated oxidation of LDL aromatic residues. Some of these phenols protected LDL Trp from oxidation better than ascorbate or alpha-tocopherol, although protection at 100 microM did not exceed 30-40%. However, the same phenolic antioxidants were more active in inhibiting 3-nitroTyr formation and those with a catechin structure provided significant protection (IC(50%) 40-50 microM). Red wine, a polyphenol-rich beverage, showed a protective effect comparable to that of the most active phenolic antioxidants. Direct EPR studies showed that bicarbonate significantly increased the peroxynitrite-dependent formation of O-semiquinone radicals in red wine, supporting the hypothesis that polyphenols are efficient scavengers of radicals formed by peroxynitrite/CO(2). Ascorbate was a poor inhibitor of peroxynitrite/CO(2)-induced LDL tyrosine nitration, but the simultaneous addition to the most active polyphenols halved their IC(50%). In conclusion, although cooperation with other antioxidants can further decrease the IC(50%) of polyphenolics, as demonstrated for ascorbate, their antioxidant activity appears to occur at concentrations at least 1 order of magnitude higher than their bioavailability.     

Biochar impact on the estimation of the colorimetric‐based enzymatic assays of soil

This study was carried out in order to assess the influence of biochar applications on the estimation of colorimetric‐based enzymatic assays and to verify the effectiveness of the most common methods. Since most methods used to determine enzymatic activities in the soil are based on colorimetry, biochar may absorb substrates and/or coloured products thereby distorting the analytical result. Biochar was added to two soils, with different textures and cation exchangeable capacities, at a rate of 2% (w/w), and seven enzyme activities were determined following standard methods. The biochar amendment lowered the spectrophotometer reading of the activity of FDAase and dehydrogenase in the sandy soil. In the three enzymatic activities based on p‐nitrophenol production (β‐glucosidase, phosphatase and arylsulphatase), the addition of biochar did not change the enzyme assays. The biochar led to an overestimation in terms of the protease and urease activities in the sandy soil. In the clay loamy soil, biochar did not change the response of any of the enzyme activities tested. A biochar dose of up to 2% only guarantees the effectiveness of the most common spectrophotometric methods for not excessively sandy soils.     

Molecular characterization of a compost and its water-soluble fractions

A sequential chemical fractionation was applied to a compost, with its dissolved organic matter (DOM) extracted in water and separated in hydrophilic (HiDOM) and hydrophobic (HoDOM) components and a water extract, following oxidation of compost suspension with an oxygen flux (TEA). The components sequentially isolated by mild extractions and hydrolyses as structurally unbound (SU), weakly bound (WB), and strongly bound (SB) to the matrix of the bulk compost and its water-soluble fractions were identified in their molecular structure. The bulk compost was rich with components derived from both aromatic (phenolic compounds) and aliphatic (long-chain fatty acids, hydroxy acids, diacids, and alcohols) structures of suberins, whereas components derived from cutins were especially extracted from TEA, HoDOM, and HiDOM. The TEA sample also yielded a significant amount of oxidized products that was dominated by dehydroabietic acids. The fractionation sequence highlighted the different intermolecular interactions that bound the isolated molecular components to the compost complex matrix. While a significant part of the bulk compost was still present as a solid residue at the end of the sequential fractionation, all water-soluble fractions were almost completely hydrolyzed. These results indicate that the water-soluble components of compost may be readily separated from the compost matrix and contribute to the environmental dynamics of natural organic matter.