Diagnostic procedures in tularaemia with special focus on molecular and immunological techniques

Tularaemia is a severe bacterial zoonosis caused by the highly infectious agent Francisella tularensis. It is endemic in countries of the northern hemisphere ranging from North America to Europe, Asia and Japan. Very recently, Francisella-like strains causing disease in humans were described from tropical northern Australia. In the last decade, efforts have been made to develop sensitive and specific immunological and molecular techniques for the laboratory diagnosis of tularaemia and also for the definite identification of members of the species F. tularensis and its four subspecies. Screening for the keyword 'Francisella' a Medline search over the last decade was performed and articles describing diagnostic methods for tularaemia and its causative agent were selected. Besides classical microbiological techniques (cultivation, biochemical profiling, susceptibility testing) several new immunological and molecular approaches to identify F. tularensis have been introduced employing highly specific antibodies and various polymerase chain reaction (PCR)-based methods. Whereas direct antigen detection by enzyme-linked immunosorbent assay (ELISA) or immunofluorescence might allow early presumptive diagnosis of tularaemia, these methods--like all PCR techniques--still await further evaluation. Therefore, diagnosis of tularaemia still relies mainly on the demonstration of specific antibodies in the host. ELISA and immunoblot methods started to replace the standard tube or micro-agglutination assays. However, the diagnostic value of antibody detection in the very early clinical phase of tularaemia is limited. Francisella tularensis is regarded as a 'highest priority' biological agent (category 'A' according to the CDC, Atlanta, GA, USA), thus rapid and reliable diagnosis of tularaemia is required not only for a timely onset of therapy, the handling of outbreak investigations but also for the surveillance of endemic foci. Only very recently, evaluated test kits for serological diagnosis of human tularaemia became available, while the introduction of standardized molecular techniques for detection and typing is still missing.     

Physiological and Yield Responses of Faba bean (Vicia faba L.) to Drought Stress in Managed and Open Field Environments

Water scarcity is threatening the sustainability of global food grain production systems. Devising management strategies and identification of crop species and genotypes are direly required to meet the global food demands with limited supply. This study, consisted of two independent experiments, was conducted to compare faba bean (Vicia faba L.) genotypes Giza Blanka, Goff‐1, Hassawi‐1, Hassawi‐2 and Gazira‐2 in terms of physiological attributes and yield under water‐limited environments. In first experiment, conducted in a growth chamber, osmotic stress of ?0.78, ?0.96, ?1.19 and ?1.65 MPa was induced using polyethylene glycol for 4 weeks. In second experiment, conducted in open field for two consecutive growing seasons, water deficit treatments were applied 3 weeks after sowing. In this experiment, irrigation was applied when an amount of evaporated water from the ‘class A pan’ evaporation reached 50 mm (well watered), 100 mm (moderate drought) and 150 mm (severe drought). Water deficit, applied in terms of osmotic stress or drought, reduced the root and shoot length, related leaf water contents, total chlorophyll contents and efficiency of photosystem‐II, plant height, grain yield and related attributes in faba bean; increased the leaf free proline, leaf soluble proteins and malondialdehyde contents, and triggered the maturity in tested faba bean genotypes. However, substantial genetic variation was observed in the tested genotypes in this regard. For instance, root length of genotypes Giza Blanka and Hassawi‐2 decreased gradually, whereas it was increased in genotypes Goff‐1, Hassawi‐1 and Gazira‐2 with increase in the level of osmotic stress. Genotypes Gazira‐2 and Hassawi‐2 had better relative leaf water contents, leaf free proline and soluble proteins under water deficit conditions; however, these were minimum in genotype Giza Blanka. Better accumulation of leaf free proline, soluble proteins, and maintenance of chlorophyll contents, tissue water, efficiency of photosystem‐II and grain weight in water‐limited conditions helped some genotypes like Hassawi‐2 to yield better. Future breeding programs for developing new faba bean genotypes for water‐limited environments may consider these traits.     

Evaluation of Submergence Tolerance in Landrace Rice Cultivars by Various Growth and Yield Parameters

Journal of Crop Science and Biotechnology - Flash flood causes a serious damage to rice crops in northern and eastern parts of Bangladesh almost every year. This study was designed to identify...     

Folate deficiency is associated with nutritional anaemia in Lebanese women of childbearing age

OBJECTIVE: The objective of this study was to identify the determinants of anaemia in Lebanese women of childbearing age attending health centres in Lebanon. DESIGN: Cross-sectional study carried out between May and December 2003. Anthropometric measurements as well as sociodemographic, health and dietary intake data were collected using a questionnaire. Haemoglobin (Hb), plasma ferritin, plasma folate and vitamin B12 were assessed using standard laboratory methods. SETTING: Governmental health centres in Lebanon. SUBJECTS: Four hundred and seventy non-pregnant Lebanese women aged 15-45 years. RESULTS: Anaemia (Hb <12 g dl(-1)) and iron deficiency (ferritin <15 microg l(-1)) were prevalent in 16.0 and 27.2% of the study sample, respectively. Of the total sample, 7.7% had iron-deficiency anaemia. The percentage of women with either Hb or ferritin deficiency or both was 35.6%. Plasma folate and vitamin B12 deficiency was reported in 25.1 and 39.4%, respectively, and 12.6% of the women had both folate and vitamin B12 deficiencies. Of the anaemic group, 48.0% of the women had iron deficiency. The intake of iron was lower in iron-deficient than in non-deficient women and a positive relationship was shown between folate intake and its corresponding serum levels. Regression analysis showed that ferritin, plasma folate and family history of anaemia were significant determinants of the anaemia in the sample of women. CONCLUSIONS: Anaemia not related to iron deficiency was partly explained by plasma folate deficiency. Measures to control folate and iron deficiency should be considered.     

Optimization of a Novel Vegetable Nursery Substrate Using Date Palm Wastes Peat and Indigenous Arbuscular Mycorrhizal Fungi

Quality of vegetable seedlings is affected by nursery management practices, essentially growing media. For sustainable greenhouse horticulture, it is important to characterize biologically based approaches to improve plantlet quality. Here, we investigate the possibility of developing a biotized growth substrate for nursery production using date palm wastes (DPWs) peat as an alternative to commercial sphagnum peat and indigenous arbuscular mycorrhizal fungi (AMF). A greenhouse experiment was established using different rates of DPWs peat to substitute commercial peat in both conventional and organic nursery production systems. Lettuce seedlings were inoculated or not with native AMF isolated from plots with conventional or organic production system (CM and OM respectively). When lettuce plantlets attained commercial size, a microscopic observation revealed that the establishment of mycorrhizal association was successful in all mixtures of growing media. Significant increase in growth parameters (height shoot, number and area of leaves, shoot and root biomass) were observed on plantlets inoculated with indigenous AMF isolated from organic plot compared to those isolated from conventional plot and to control (without AMF). Commercial peat partial substitution with DPWs peat in proportion of 25–50% improves better lettuce performance than complete-peat use. Consequently, these mixtures seem to be an appropriate formulation for sustainable nursery production.     

An H-NS-like stealth protein aids horizontal DNA transmission in bacteria

The Sfh protein is encoded by self-transmissible plasmids involved in human typhoid and is closely related to the global regulator H-NS. We have found that Sfh provides a stealth function that allows the plasmids to be transmitted to new bacterial hosts with minimal effects on their fitness. Introducing the plasmid without the sfh gene imposes a mild H-NS(-) phenotype and a severe loss of fitness due to titration of the cellular pool of H-NS by the A+T-rich plasmid. This stealth strategy seems to be used widely to aid horizontal DNA transmission and has important implications for bacterial evolution.     

Zinc distribution and speciation within rocket plants (Eruca vesicaria L. Cavalieri) grown on a polluted soil amended with compost as determined by XRF microtomography and micro-XANES

Zinc distribution and speciation within different organs (root, petiole, and leaf) of the edible plant Eruca vesicaria L. Cavalieri were determined using synchrotron microbeam X-ray techniques (XRF microtomography and mu-XANES) for plants grown in polluted soil with or without compost amendment. Data on soil derived from different extraction procedures and using mu-XANES analyses on rhizospheric soil indicated that compost amendment did not significantly influence the Zn speciation and availability in soil. However, major differences were observed within the plants. Plants grown in the presence of compost were able to partly block zinc immediately outside the root endodermis in the form of zinc-phytate, while a smaller Zn fraction was allowed to xylem transport as zinc-citrate. In the leaves, zinc was largely excluded from leaf cells, and about approximately 50% was in the form of phosphate precipitates, and the other 50% was complexed by cysteine and histidine residues. The reported data provide new information concerning the mechanisms of zinc tolerance in E. vesicaria L. Cavalieri, a very common edible plant in Mediterranean regions, and on the role of compost in influencing the molecular strategies involved in zinc uptake and detoxification.     

Equilibrium sediment exchange in the earth’s critical zone: evidence from sediment fingerprinting with stable isotopes and watershed modeling

Journal of Soils and Sediments - The equilibrium sediment exchange process is defined as instantaneous deposition of suspended sediment to the streambed countered by equal erosion of sediment from...     

A spectral correction method for multi-scattering effects in close range hyperspectral imagery of vegetation scenes: application to nitrogen content assessment in wheat

In-field hyperspectral imagery is a promising tool for crop phenotyping or monitoring. In association with partial least square regression (PLS-R), it allows building high spatial resolution maps of the chemical content of plant leaves. However, several optical phenomena must be taken into account, due to their influence on collected spectral data. The most challenging is multiple scattering, produced when a leaf is partly illuminated by light reflection or transmission from neighboring leaves. It can induce bias in prediction results. This paper presents a method for multi-scattering correction. Its development has been based on simulation tools: a 3D canopy model of winter wheat was combined with light propagation modeling, in order to simulate the apparent reflectance of every visible leaf in the canopy for a given actual reflectance. Leaf nitrogen content (LNC) prediction has been considered. A data set of reflectance spectra associated with LNC values has been issued from real leaf measurements. A theoretical disturbance subspace representing the spectrum dispersion in the spectral space due to multi-scattering has then been built by considering polynomial combinations of the initial spectra, and a projection along this subspace has been applied to every simulated spectra. Using this strategy, a PLS-R model built on initial spectra was still satisfactory when applied to simulated spectra with multiple scattering. The method has then been applied to real plants in greenhouse and field conditions, and its prediction results compared with those of a standard PLS-R, confirming its efficiency in the presence of various lighting environments.