Changes in soil microbial community and activity in warm temperate forests invaded by moso bamboo (<Emphasis Type="Italic">Phyllostachys pubescens</Emphasis>)

In the past few decades, moso bamboo (Phyllostachys pubescens) forests in Japan have rapidly expanded, and moso bamboo is now invading nearby native forests. In this study, we assessed the effects of moso bamboo invasion on the soil microbial community and activity in warm temperate forests in western Japan. We sampled soil, measured soil microbial respiration, and used phospholipid fatty acid (PLFA) analysis to examine changes in microbial community composition. We found that the invasion of bamboo into the native secondary forest of Japan can cause changes to some soil properties. We also observed a significant difference in soil microbial community composition between the bamboo and native forests. The ratio of bacterial PLFA to fungal PLFA was significantly higher after bamboo invasion, while bacterial PLFA contents were significantly lower in the organic layer. Soil microbial respiration rates significantly decreased in the organic layer, and significantly increased in the mineral layer. Microbial respiration activity, as indicated by soil microbial respiration rates per total PLFA content, decreased in the organic layer but increased in the mineral layer after bamboo invasion. These results indicate that bamboo invasion significantly affects associated soil microbial communities and decomposition patterns of soil organic matter.     

Autophagy-dependent viral recognition by plasmacytoid dendritic cells

Plasmacytoid dendritic cells (pDCs) detect viruses in the acidified endosomes by means of Toll-like receptors (TLRs). Yet, pDC responses to certain single-stranded RNA (ssRNA) viruses occur only after live viral infection. We present evidence here that the recognition of such viruses by TLR7 requires transport of cytosolic viral replication intermediates into the lysosome by the process of autophagy. In addition, autophagy was found to be required for the production of interferon-alpha by pDCs. These results support a key role for autophagy in mediating ssRNA virus detection and interferon-alpha secretion by pDCs and suggest that cytosolic replication intermediates of viruses serve as pathogen signatures recognized by TLR7.     

Actin polymerization-driven molecular movement of mDia1 in living cells

mDia1, a Rho effector, belongs to the Formin family of proteins, which shares the conserved tandem FH1-FH2 unit structure. Formins including mDia1 accelerate actin nucleation while interacting with actin filament fast-growing ends. Here our single-molecule imaging revealed fast directional movement of mDia1 FH1-FH2 for tens of microns in living cells. The movement of mDia1 FH1-FH2 was blocked by actin-perturbing drugs, and the speed of mDia1 FH1-FH2 movement appeared to correlate with actin elongation rates. In vitro, mDia1 FH1-FH2 associated persistently with the growing actin barbed end. mDia1 probably moves processively along the growing end of actin filaments in cells, and Formins may be a molecular motility machinery that is independent from motor proteins.     

Bora and the kinase Aurora a cooperatively activate the kinase Plk1 and control mitotic entry

A central question in the study of cell proliferation is, what controls cell-cycle transitions? Although the accumulation of mitotic cyclins drives the transition from the G2 phase to the M phase in embryonic cells, the trigger for mitotic entry in somatic cells remains unknown. We report that the synergistic action of Bora and the kinase Aurora A (Aur-A) controls the G2-M transition. Bora accumulates in the G2 phase and promotes Aur-A-mediated activation of Polo-like kinase 1 (Plk1), leading to the activation of cyclin-dependent kinase 1 and mitotic entry. Mechanistically, Bora interacts with Plk1 and controls the accessibility of its activation loop for phosphorylation and activation by Aur-A. Thus, Bora and Aur-A control mitotic entry, which provides a mechanism for one of the most important yet ill-defined events in the cell cycle.     

The pollutant loads from a paddy field watershed due to agricultural activity

Observations were performed in a small agricultural watershed for four consecutive irrigation periods in order to characterize fluctuations in the characteristics of pollutant runoff from paddy fields. During the puddling and rice-planting period and at the beginning of the mid-summer drainage period, both the pollutant concentrations and pollutant loadings of suspended solids, total nitrogen, and total phosphorus increased. In contrast, the pollutant net loading of total nitrogen was negative during the intermittent irrigation period. These results indicate that changes in the specific agricultural activities in the paddy fields cause temporal fluctuations of the pollutant runoff. Previous studies which focused on paddy fields have dealt with unit loading for entire irrigation period only. However, the unit loading for the entire irrigation period cannot take into account pollutant loading fluctuations due to differences in agricultural activity. Thus the unit loading of pollutant should be evaluated for each agricultural activity during the irrigation period.     

Nocapyrones: α- and γ-Pyrones from a Marine-Derived Nocardiopsis sp.

One new α-pyrone (nocapyrone R (1)), and three known γ-pyrones (nocapyrones B, H and L (2–4)) were isolated from the culture extract of a Nocardiopsis strain collected from marine sediment. Structures of these compounds were determined on the basis of spectroscopic data including NMR and MS. γ-Pyrones 2–4 were found to induce adiponectin production in murine ST-13 preadipocyte cells but the α-pyrone 1 had no activity. The absolute configuration of the anteiso-methyl branching in 4 was determined by HPLC comparison of a degraded product of 4 with standard samples as a 2:3 enantiomeric mixture of (R)- and (S)-isomers.     

Fecal metabolite analysis of Japanese macaques in Yakushima by LC-MS/MS and LC-QTOF-MS

We performed a comprehensive fecal metabolite analysis using LC-MS/MS and LC-QTOF-MS approaches as a preliminary study. Feces of Japanese macaques on Yakushima Island were collected from five monkeys at two separate locations. Using the former methodology, 59 substances such as free amino acids, nucleotides, nucleosides and nucleic acid bases, and organic acids in the citrate cycle were quantitatively detected and successfully differentiated in two different monkey groups by the concentrations of nucleic acid metabolites and free amino acids. In the latter, around 12,000 substances were detected both by positive and negative mode in each sample. Differences in signal intensities were observed between two monkey groups in the concentrations of plant secondary metabolites such as cyanogenic glycosides, flavonoids, and phenolics.     

Interaction of coenzyme Q10 with the intestinal drug transporter P-glycoprotein

In clinical trials, patients usually take many kinds of drugs at the same time. Thus, drug-drug interactions can often directly affect the therapeutic safety and efficacy of many drugs. Oral delivery is the most desirable means of drug administration. Changes in the activity of drug transporters may substantially influence the absorption of administered drugs from the intestine. However, there have been a few studies on food-drug interactions involving transporters. It is important to be aware of the potential of food-drug interactions and to act in order to prevent undesirable and harmful clinical consequences. Coenzyme Q10 (CoQ10) is very widely consumed by humans as a food supplement because of its recognition by the public as an important nutrient in supporting human health. Since intestinal efflux transporter P-glycoprotein (P-gp) is one of the major factors in drug-drug interactions, we focused on this transporter. We report here for the first time that CoQ10, which is widely used as a food supplement, affects the transport activity of P-gp.     

Biochemical and genomic analysis of neoculin compared to monocot mannose-binding lectins

Neoculin occurring in an edible tropical fruit is a heterodimeric protein which has both sweetness and a taste-modifying activity that converts sourness to sweetness. Both the primary and the overall tertiary structures of neoculin resemble those of monocot mannose-binding lectins. This study investigated differences in biochemical properties between neoculin and the lectins. Structural comparison between the mannose-binding sites of lectins and the corresponding regions of neoculin showed that there is at least one amino acid substitution at each site in neoculin, suggesting a reason for the lack of its mannose-binding ability. This was consistent with hemagglutination assay data demonstrating that neoculin had no detectable agglutinin activity. DNA microarray analysis indicated that neoculin had no significant influence on gene expression in Caco-2 cell, whereas kidney bean lectin (Phaseolus vulgaris agglutinin) greatly influenced various gene expressions. These data strongly suggest that neoculin has no lectin-like properties, encouraging its practical use in the food industry.