Creating the data basis to adapt agricultural decision support tools to new environments,land management and climate change—A case study of the RiceAdvice App

Increasing demand for land to ensure human food security in the future has already impelled agricultural production into marginal areas. The environmental conditions found there have a more pronounced impact on agricultural productivity than in the systems used so far under favourable conditions. In addition to this challenge, climate change is expected to increase the unreliability of weather conditions (through increased variability and occurrence of extremes) for farmers considerably. This unreliability is even more serious in developing countries’ farming system where food security is vulnerable. Current efforts in digitalization offer great possibilities to improve farmers` decision-making processes. A wide range of online tools and smartphone applications is available to support both agricultural extension services and smallholder farmers alike. These apps are often parameterized and validated to certain environments and are troubled when applied to new geographical locations and different environmental conditions. We have conducted field trials to demonstrate potential methods to close knowledge gaps in the data background for one of these apps, RiceAdvice, concerning three key aspects: shifting of cropping calendar, adjustment of fertilizer management and genotype selection. Sites in Ethiopia, Madagascar and Rwanda were selected to represent altitudinal gradients, with overlapping elevations reflecting differences in temperature to enable cross-country comparisons. Planting dates were distributed throughout three calendar years, with continuous iterative planting dates taking place in Madagascar, in- and off-season planting dates in Rwanda with different fertilizer applications, and one planting date during each rainy season in Ethiopia with different management options. With these trials, we have been able to identify key data sets needed for the adaptation of agricultural decision support tools to new environments. These include the assessment of climatic constraints on innovations to cropping calendars (e.g. double cropping), informed selection of alternative varieties able to complete crucial parts of their phenological development to avoid temperature-related stress inducing, for example spikelet sterility in rice in late development stages and the effectivity of potential innovations in fertilizer management strategies.     

Salinity intrusion and rice production in Red River Delta under changing climate conditions

This study was carried out to identify the vulnerability of rice production to salinity intrusion arising from climate change in Giao Thuy, a coastal district of Nam Dinh Province, located in Red River Delta in Vietnam. From the analysis of historical climate data at Nam Dinh city, both mean maximum and minimum temperatures increased by about 0.3 and 0.1 °C per decade, respectively, during the period of 1961–2010. Salt concentration of the river water was higher at the irrigation gate closer to river mouth (Con Nhat) than at the upstream gate (Ha Mieu), which generally increased from 2003 to 2012, with the average maximum concentration up to 2.13 % at Con Nhat gate in 2010. The salt water concentration in the riverside field outside the dyke reached 3.6 %, while among the fields within dyke the salinity was only 0.7 % at maximum in January 2013, and the values were higher in paddy fields close to the dyke than far from the dyke. Average yield among the selected 27 fields from 2011 summer to 2013 spring rice was higher in spring rice (748 g m^?2) but lower in summer rice (417 g m^?2) mainly due to unfavorable weather such as cold spell at flowering and flood at harvesting time. Rice yield was lowest in general in the most downstream commune Giao Thien, and was significantly lower in field located close to the dyke than those far from the dyke. This spatial variability of rice yield may not be directly attributable to salinity, but to the other factors such as shift of irrigation intake gate to further upstream and/or different management such as less input of N fertilizer and use of traditional local variety.     

Can research on the early marine life stage of juvenile chum salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis> forecast returns of adult salmon? A case study from eastern Hokkaido,Japan

To examine the efficacy of juvenile salmon research as a tool for forecasting adult returns, the results from a study on the early marine life stage of juvenile chum salmon, conducted in the Nemuro Strait during 1999–2002 (i.e., 1998–2001 brood years), were compared with the return rates of adult salmon. Among the four brood years, the 2000 brood year (i.e., salmon migrating to the sea in 2001) was previously reported as showing higher abundance, higher growth rate and better somatic condition during the coastal residency period. Consequently, we expected it to have the highest return rate, under a hypothesis that juvenile survival in coastal residency regulates brood-year strength. Contrary to this expectation, the 2000 brood year had almost the lowest return rate. Alternatively, a statistical model in which sea surface temperature during the first year of marine life and size at release were utilized as explanatory variables reconstructed the actual variability in return rates more accurately than that based on the early marine life stage. Possible reasons for the discrepancy between the results of the juvenile salmon research and adult returns are discussed, and we suggest improvements for future research on juvenile salmon.     

Development of nuclear DNA markers to characterize genetically diverse groups of <Emphasis Type="Italic">Misgurnus anguillicaudatus</Emphasis> and its closely related species

Repetitive DNA sequences, ManDra and ManBgl, were isolated from the DraI and BglII digests of the genomic DNA of Misgurnus anguillicaudatus, respectively. A primer set of ManDra distinguished two genetically different groups (A and B) of M. anguillicaudatus by specific electrophoretograms. A primer set of ManBgl amplified the DNA of M. anguillicaudatus and M. mizolepis. The individuals of M. anguillicaudatus were divided into two groups depending on the fragment sizes, in which the groups A and B (B-1 and B-2) showed 400 and 460 bp, respectively. M. mizolepis was distinguished by a different pattern (400-, 460-, and 510-bp fragments). PCR–RFLP analyses of recombination activating gene 1 gave a clear difference between A or B-2 (443-bp fragment) and B-1 groups (296- and 147-bp fragments). Clonal lineages and hybrids between B-1 and B-2 groups could be identified by appearance of three fragments (443, 296, and 147 bp). The combined analyses using the above three nuclear markers discriminated among nuclear genomes of genetic groups (A, B-1 and B-2) of M. anguillicaudatus and M. mizolepis. In several localities, natural hybridizations between the group B-1 and B-2 loaches and introgressions of clonal mitochondrial genomes into the group B-1 loaches were detected.     

Identification of irradiated prawn (Penaeus monodon ) using thermoluminescence and 2-alkylcyclobutanone analyses

Thermoluminescence (TL) and 2-alkylcyclobutanone (2-ACB) analyses were performed to identify irradiated prawns ( Penaeus monodon ). With the TL method, minerals were extracted from prawns using acid hydrolysis. The experimental results satisfied the evaluation criteria of European Norm (EN) 1788, even after low-dose irradiation (0.5 kGy) and a 60 day storage at -20 °C. With the 2-ACB method, 2-dodecylcyclobutanone (2-DCB) and 2-tetradecylcyclobutanone (2-TCB) were successfully extracted from prawns by direct solvent extraction with purification using a conventional silica column and a sulfoxide column, which was used for 2-ACB for the first time. Both 2-ACB derivatives were absent from the non-irradiated samples but were identified in all irradiated samples by gas chromatography-mass spectrometry. Moreover, 2-DCB and 2-TCB production correlated with the applied dose (2.5-10 kGy), and the correlation did not diminish after 60 days of storage at -20 °C for any dose. Therefore, these two techniques provide rapid, simple, and promising methods for routine investigation of frozen prawns.     

Identification of anthocyanins in the sprouts of buckwheat

The anthocyanin profiles and varieties/breeding line differences of anthocyanin concentrations in common/tartary buckwheat sprouts have been studied. Four anthocyanins, cyanidin 3-O-glucoside, cyanidin 3-O-rutinoside, cyanidin 3-O-galactoside, and cyanidin 3-O-galactopyranosyl-rhamnoside, were isolated from the sprouts of common buckwheat, were separated using high-performance liquid chromatography (HPLC), and were identified using reversed-phase liquid chromatography (LC)/electrospray ionization-mass spectrometry (ESI-MS)/MS techniques. In tartary buckwheat sprouts, two anthocyanins (cyanidin 3-O-glucoside and cyanidin 3-O-rutinoside) were identified. Among 19 common/tartary buckwheat varieties/breeding lines, Hokkai T10 contained the highest amounts of anthocyanins. Cyanidin 3-O-glucoside and cyanidin 3-O-rutinoside concentrations in 6-10 days after seeding sprouts of Hokkai T10 ranged from 0.16 to 0.20 mg/g dry wt and from 5.55 to 6.57 mg/g dry wt, respectively. In addition, dark-grown sprouts of Hokkai T10 accumulated 0.091 and 2.77 mg/g dry wt of cyanidin 3-O-glucoside and cyanidin 3-O-rutinoside whereas other varieties/breeding lines accumulated trace amounts of anthocyanins. Given its anthocyanin-rich red cotyledons, Hokkai T10 is a promising line for use as "Moyashi" type sprouts and is strongly recommended as a new functional food, rich in dietary anthocyanins.     

Purification and characterization of glycerolipid acyl-hydrolase from the red alga Gracilaria vermiculophylla

ABSTRACT:   A glycerolipid acyl-hydrolase was purified 19-fold with a yield of 11% from the prostaglandin-producing red alga Gracilaria vermiculophylla by ammonium sulfate precipitation, anion-exchange chromatoraphy and gel filtration chromatography. Sodium dodecylsulfate– polyacrylamide gel electrophoresis of the final preparation showed a single band corresponding to a molecular mass of 20 kDa, but Superdex 200 fast protein liquid chromatography exhibited a molecular mass of 40 kDa. Accordingly, it was suggested that the purified enzyme was a homodimer of a 20 kDa subunit. The optimal temperature and pH were 37°C and 7–8, respectively. The purified enzyme catalyzed hydrolysis of the acyl groups of both glycoglycerolipids and phospholipids, especially monogalactosyldiacylglycerol and phosphatidylcholine. These results suggest that the enzyme hydrolyze the membrane lipids of the alga to release various saturated and unsaturated fatty acids, including arachidonic acid as substrate for prostaglandin synthesis.     

Environmental characteristics of spawning and nursery grounds of Japanese sardine and mackerels in the Kuroshio and Kuroshio Extension area

The sustainable use of marine resources requires understanding the surrounding ecosystem and elucidating mechanisms of variation. However, we still lack a comprehensive understanding of environmental variation in the spawning and nursery grounds of important fisheries species Japanese sardine (Sardinops melanostictus) and mackerels (Scomber japonicus and Scomber australasicus) in the northwest Pacific. Here, we investigate detailed physical, chemical, and biological environment variations in the spawning and nursery grounds along the Kuroshio and Kuroshio Extension area from intensive investigation in spawning season (April) of 2013. We found similar water mass property and copepod community in the egg‐rich Kuroshio area and the larvae‐rich downstream Kuroshio Extension area, indicating environmental variability is small during transportation and development processes. The egg‐rich northern Izu Islands region showed high copepod abundance, although low nutrient and chlorophyll concentrations were observed. Eggs were scarce or absent in the second survey 10 days after abundant eggs were observed in the region, along with differences in water property and copepod community. This indicates that not only the location but also the specific water characteristic and copepod community are a determining factor for spawning. Indicator communities of copepod found in our study (indicator community of transportation process from spawning ground, of non‐spawning ground, and of reproductive area in the Kuroshio Extension area) would be a key factor for recruitment prediction.     

Development of a technique to estimate the horizontal distribution of lit fishing vessels in the East China Sea using satellite luminescence

Fisheries Science - The East China Sea is a semi-enclosed sea, surrounded by Japan, China, South Korea and Taiwan, and is continuously influenced by lit fishing vessels overexploiting fishery...     

Infectivity of feline enteroepithelial stages of Toxoplasma gondii isolated by Percoll-density gradient centrifugation.

The infectivity of the feline enteroepithelial stages of Toxoplasma gondii isolated by Percoll-density gradient centrifugation was examined by the trypan blue dye exclusion method by assaying their penetration into feline fibroblast cells in vitro and by inoculation of the intestinal mucosa of cats. A large population of the parasites showed trypan blue dye exclusion activity. When feline fibroblast cells were inoculated with feline enteroepithelial stage parasites, no intracellular parasites were found 18 h post-inoculation. Kittens inoculated intraduodenally with 2 x 10(6) feline enteroepithelial stage parasites shed oocysts between 2 and 8 days post-inoculation. These results indicate that the isolated feline enteroepithelial stage parasites display infectivity towards enterocytes of cats and are capable of gametogenesis.