Using DNA from museum specimens to preserve the integrity of evolutionarily significant unit boundaries in threatened species

Use of DNA from museum samples is a powerful tool to directly establish historical ESU boundaries in areas where populations of a species have been extirpated. The brush-tailed rock-wallaby (Petrogale penicillata) has suffered extensive reductions in range and population size since European settlement in Australia. Populations of this species have been grouped into three putative evolutionarily significant units (ESUs) which were likely once contiguous along the south-east coast of Australia. However, there is currently a gap of ∼320 km between extant populations of the southern and central ESUs. Conservation plans for the brush-tailed rock-wallaby include re-introductions of animals to locations within their former range. In order to preserve the historic geographic integrity of the genetic lineages within the species, it is necessary to map the boundary between the southern ESU and central ESU to allow more informed management decisions about which lineages should be used to re-stock specific geographic locations. We have extracted DNA from samples from museum specimens that come from locations between the southernmost extant colony of the central ESU and the remaining wild colony of the southern ESU. We sequenced a 177 bp interval of the left domain of the mitochondrial DNA control region and used phylogenetic analysis to group obtained sequences with previously published sequences belonging to the three ESUs. We have extended the range of the central ESU southwards and the range of the southern ESU northwards such that the gap between the ESUs is now approximately 160 km. We recommend that, where suitable historical museum collections exist, this technique be incorporated into re-introduction plans for other threatened species.     

Gestion de Crassula helmsii en Belgique plus difficile qu’il n’y paraît?

La crassule des étangs (Crassula helmsii) est une plante invasive (ou exotique envahissante) qui représente un risque environnemental pour les milieux aquatiques en Belgique et, plus globalement, en Europe. Pour contrôler cette espèce, les acteurs de terrain disposent d’une littérature a priori abondante, ainsi que de plusieurs bases de données relatives à sa distribution spatiale. Néanmoins, les gestionnaires peuvent vite se sentir désarmés, d’une part par le manque de clarté sur les moyens à mettre en ?uvre afin d’endiguer la propagation de l’espèce et, d’autre part, par le manque d’exhaustivité des bases de données. S’ajoute à cela une insuffisance de littérature sur les vecteurs de dissémination à travers les paysages.     

Spatial Clustering of Escherichia coli with Reduced Susceptibility to Cefotaxime and Ciprofloxacin among Dairy Cattle Farms Relative to European Starling Night Roosts

European starlings (Sturnus vulgaris) have been implicated in the dispersal of zoonotic enteric pathogens. However, their role in disseminating antimicrobial‐resistant organisms through their home range has not been clearly established. The aim of this study was to determine whether starling night roosts served as foci for spreading organisms with reduced susceptibility to antimicrobials among dairy cattle farms. Bovine faecal pats were collected from 150 dairy farms in Ohio. Each farm was visited twice (in summer and fall) between 2007 and 2009. A total of 1490 samples (10 samples/farm over two visits) were tested for Escherichia coli with reduced susceptibility to cefotaxime and ciprofloxacin. Using a spatial scan statistic, focal scans were conducted to determine whether clusters of farms with a high prevalence of organisms with reduced susceptibility to cefotaxime and ciprofloxacin surrounded starling night roosts. Faecal pats 13.42% and 13.56% of samples carried Escherichia coli with reduced susceptibility to cefotaxime and ciprofloxacin, respectively. Statistically significant (P < 0.05) spatial clusters of faecal pats with high prevalence of Escherichia coli showing reduced susceptibility to cefotaxime and ciprofloxacin were identified around these night roosts. This finding suggests that the risk of carriage of organisms with reduced susceptibility to antimicrobials in cattle closer to starling night roosts was higher compared to cattle located on farms further from these sites. Starlings might have an important role in spreading antimicrobial‐resistant E. coli to livestock environments, thus posing a threat to animal and public health.     

A SIMPLIFIED PLANKTON BUCKET

The waters of the recent floods in Vermont and Massachusetts reached the haymows of hundreds of barns. Excessive heating set in almost immediately after the flood waters receded, endangering the farm buildings. Observations were made at 13 different farms in the valleys of the Winooski, Lamoille and Mississquoi Rivers. These observations are summarized in the following statements: 1. From half a foot to seventeen feet of the piles were under water. 2. In every pile of wet hay observed some "heating" had taken place, frequently to the point of being considered dangerous. 3. Heat was generated in the bottom layers of the piles and, escaping up through the hay, led to the production of draughts of hot gases or "flues" rising to the surface. 4. The large quantity of moisture carried with the hot gases from the lower layers was condensed on the upper, cooler hay, or in the air above. Many hay piles had been soaked throughout by the falling condensed moisture. 5. While the hot hay was being removed from the barns only one farmer had observed any charred materials. 6. The maximum temperature found (besides one case of fire) was 74 degrees C., though temperatures above 70 degrees were recorded in other places. 7. The most marked evidence of excessive heating was observed (by the farmers) on the second and third days after the recession of the flood waters. 8. One authentic case of "spontaneous" combustion of hay caused by the flood was reported. The outstanding features were: a. The lower two feet of the pile consisted of old hay from the preceding season (1926). b. Covering this lower 2-foot section of old hay was a 6-inch layer of first cutting alfalfa. c. Two feet beneath the top surface of the 42-foot pile was another 6-inch layer of alfalfa (second cutting). d. This hay pile which fired "spontaneously" was the only one containing even a small quantity of alfalfa. The urgent need for extensive research upon the problem of the "spontaneous" heating of farm products was emphasized by the lack of scientific knowledge with which to meet the situation.     

Procollagen type-III aminoterminal peptide in serum and synovial fluid of dogs with hip dysplasia and coxarthrosis

Hip dysplasia is an affection of the coxofemoral joint that progresses until stabilization is caused by fibrosis and osteoarthritic changes. This stabilization process can be examined by clinical and radiographic methods. The capability of evaluating the procollagen concentrations in liquids, such as serum and synovial fluid, has further offered the basis for an objective biochemical evaluation of the stabilization process. Our study was performed to evaluate whether determination of procollagen concentrations was suitable for the use in practice. The procollagen type-III aminoterminal peptide (P-III-NP) concentration was measured in serum and in synovial fluid from coxofemoral joints in 20 dogs. Dogs were grouped on the basis of evidence of dysplasia and osteoarthritic changes of the hip: (1) a control group of 6 dogs without clinical or radiographic signs of hip dysplasia, and (2) dysplastic group of 14 dogs, which was further grouped with respect to the coxofemoral joint laxity, as determined by the Ortolani test. Synovial fluid concentration of P-III-NP was significantly (P less than 0.05) higher in fluid from dysplastic joints than in fluid from normal joints. Serum concentrations of P-III-NP were significantly (P less than 0.05) higher in dogs in which results of the Ortolani test were positive.     

Identification of Neofabraea species causing bull's eye rot of apple in Poland and their direct detection in apple fruit using multiplex PCR

Based on partial sequence analysis of the β‐tubulin gene, 19 isolates of fungi causing bull's eye rot on apple in Poland were classified into species: Neofabraea alba, N. perennans and N. kienholzii. To the authors’ knowledge, the detection of N. kienholzii is the second in Europe and the first in Poland. Species affiliation of these fungi was confirmed by a new species‐specific multiplex PCR assay developed on the basis of previously published methods. The new protocol allowed for the specific identification of bull's eye rot‐causing species, both from pure cultures and directly from the skin of diseased or apparently healthy apples. In 550 samples of diseased fruits collected from nine cold storage rooms located in three regions of Poland, in 2011 and 2012, N. alba was detected as the predominant species causing bull's eye rot, occurring on average in 94% of the tested samples. Neofabraea perennans was found in a minority of apple samples, N. kienholzii was found only in two apple samples, while N. malicorticis was not detected in any sample tested. In tests on 120 apparently healthy fruits, only N. perennans was detected in a single sample. The results of genetic diversity analyses of bull's eye rot‐causing fungi based on the β‐tubulin gene sequence and an ISSR (inter‐simple sequence repeat) PCR assay with two primers were consistent, showing the expected segregation of tested isolates with respect to their species boundaries. However, the genetic distance between N. perennans and N. malicorticis was very low, as reported previously.