Responses of Riverine Macroinvertebrates to Zinc in Natural Streams: Implications for the Japanese Water Quality Standard

We conducted a field survey in Japanese streams and rivers to generate useful information about whether the Japanese water quality standard for zinc (Zn) in the freshwater environment (30 μg/L) is over- or underprotective of the populations and communities of lotic benthic macroinvertebrates. Many macroinvertebrate populations were reduced and community characteristics were altered at two polluted sites with Zn concentrations above 1,000 μg/L as compared with control sites with Zn concentrations below 30 μg/L. In contrast, at least one site among three polluted sites with Zn concentrations of 80–126 μg/L experienced noncritical effects (i.e., no significant difference was observed between the sample mean at a polluted site and that at the control sites, and the sample mean was within the minimum–maximum range of those at the control sites) for most of the ten community metrics for diversity and abundance. In addition, the abundances of 95% of the dominant taxa were not always significantly lower at more than one polluted site (Zn concentrations, ≥80 μg/L). Our results suggest that Zn concentrations below approximately 100 μg/L are likely to protect most aspects of richness and abundance of the riverine macroinvertebrate communities in the study areas. This study shows a case that the Japanese Zn standard is likely overprotective of the macroinvertebrate populations and communities.     

Internal fruit rot of netted melon caused by <Emphasis Type="Italic">Pantoea ananatis</Emphasis> (=<Emphasis Type="Italic">Erwinia ananas</Emphasis>) in Japan

An internal fruit rot with a malodor was found in netted melons (Cucumis melo L.) in commercial greenhouses in Kochi Prefecture, Japan, in 1998, despite their healthy appearance and lack of water-soaking or brown spots on the surface. A yellow bacterium was consistently isolated from the affected fruits. To confirm the pathogenicity of eight representative isolates of the yellow bacterium, we stub-inoculated ovaries (immature-fruits) 5–7 days after artificial pollination, with a pin smeared with bacteria. After the melon fruits had grown for 60 more days, an internal fruit rot resembling the natural infection appeared, and the inoculated bacterium was reisolated. The melon isolates had properties identical with Pantoea ananatis, such as gram-negative staining, facultative anaerobic growth, indole production, phenylalanine deaminase absence, and acid production from melibiose, sorbitol, glycerol, and inositol. Phylogenetic analysis based on 16S rDNA sequences showed that the melon bacterium positioned closely with known P. ananatis strains. The melon bacterium had indole acetic acid (IAA) biosynthesis genes (iaaM and iaaH) and a cytokinin biosynthesis gene (etz). The bacterium could be distinguished from the other ‘Pantoea’ group strains by rep-PCR genomic fingerprinting. From these results, the causal agent of internal fruit rot was identified as a strain of P.ananatis [Serrano in (Philipp J Sci 36:271–305, 1928); Mergaert et al. in (Int J Syst Bacteriol 43:162–173, 1993)]. The nucleotide sequence data reported are available in the DDBJ database under accessions AB297969, AB373739, AB373740, AB373741, AB373742, AB373743 and AB373744.     

Fractionation of metal complexes with dissolved organic matter in a rhizosphere soil solution of a humus-rich Andosol using size exclusion chromatography with inductively coupled plasma-mass spectrometry

To better understand the behavior of metals in soil–plant systems, their physicochemical forms in rhizosphere soil should be elucidated. The dissolved organic matter (DOM) in a soil solution influences the mobility and bioavailability of metals in soil. The present study examined the effects of plant growth on DOM–metal complexes in a rhizosphere soil solution using size exclusion chromatography combined with an inductively coupled plasma-mass spectrometer system (SEC–ICP-MS) and an ultrafiltration technique. Humus-rich volcanic ash soil from the surface of an agricultural field was used in a pot cultivation experiment. Brassica rapa nothovar. was cultivated in a pot in which rhizosphere soil (R) was separated by a nylon net screen from non-rhizosphere soil (NR). Soil solutions were collected using a high-speed centrifugation method 3 weeks after sowing and analyzed using SEC–ICP-MS. Some peaks of DOM with a high molecular size were detected in the ultraviolet-absorbing chromatograph (280 nm) of the soil solution samples. Their concentrations were much higher in the R solution than in the NR solution. Metals including Al, Fe, Cu, Zn, Pb, Y, La and U were detected at the ultraviolet peak positions of the DOM. The ultrafiltration experiment showed that the size distributions of the organic materials to which the metals were combined differed between the R and NR soil solutions. These results suggest that plant growth enhanced the dissolution of metals adsorbed with organic matter from the solid phase in rhizosphere soil.     

Infection of a group of boar-hunting dogs with Paragonimus westermani in Miyazaki Prefecture, Japan

A 5-year-old male mixed-bred boar-hunting dog with a Plott hound background weighing 23 kg was brought to the Veterinary Teaching Hospital, University of Miyazaki, in October 2002. The dog was diagnosed with active infection with the lung fluke Paragonimus westermani by serological testing and also by detection of parasite eggs in his feces. Subsequent examination of four other dogs working with this dog as a boar-hunting team revealed that all five dogs were infected with P. westermani.     

Cesium absorption through bark of Japanese cedar (<Emphasis Type="Italic">Cryptomeria japonica</Emphasis>)

Absorption of radiocesium (¹³⁷Cs and ¹³⁴Cs) through bark, and its subsequent translocation into wood and needles, has been suggested as a potential source of tree contamination, but the process is not well understood. Field experiments were conducted to confirm whether Cs could enter a Japanese cedar tree through the bark and how Cs moves within a tree. Stable Cs (¹³³Cs) was applied to the bark at 1.2-m height on 10- and 26-year-old Japanese cedars. The ¹³³Cs concentrations were determined in the bark, sapwood, and heartwood (for 26-year-old cedar only) of stem disks from several heights, as well as in current-year needles from the canopy. The ¹³³Cs concentrations were considerably higher in the sapwood and heartwood of stem disks from 1.2-m height in treated trees than in untreated trees, suggesting that ¹³³Cs penetrated the bark to enter the wood. The average ¹³³Cs concentrations were higher in the heartwood than the sapwood, indicating ¹³³Cs accumulation in the heartwood. High ¹³³Cs concentrations in the needles of treated trees implied acropetal movement of ¹³³Cs to actively growing organs. Our results demonstrate that Cs can enter Japanese cedar trees through the bark and that Cs is transported radially to the heartwood and vertically to the apex.     

Characterization of a mini core collection of Japanese wheat varieties using single-nucleotide polymorphisms generated by genotyping-by-sequencing

A core collection of Japanese wheat varieties (JWC) consisting of 96 accessions was established based on their passport data and breeding pedigrees. To clarify the molecular basis of the JWC collection, genome-wide single-nucleotide polymorphism (SNP) genotyping was performed using the genotyping-by-sequencing (GBS) approach. Phylogenetic tree and population structure analyses using these SNP data revealed the genetic diversity and relationships among the JWC accessions, classifying them into four groups; “varieties in the Hokkaido area”, “modern varieties in the northeast part of Japan”, “modern varieties in the southwest part of Japan” and “classical varieties including landraces”. This clustering closely reflected the history of wheat breeding in Japan. Furthermore, to demonstrate the utility of the JWC collection, we performed a genome-wide association study (GWAS) for three traits, namely, “days to heading in autumn sowing”, “days to heading in spring sowing” and “culm length”. We found significantly associated SNP markers with each trait, and some of these were closely linked to known major genes for heading date or culm length on the genetic map. Our study indicates that this JWC collection is a useful set of germplasm for basic and applied research aimed at understanding and utilizing the genetic diversity among Japanese wheat varieties.     

Pathogenic races of soybean rust Phakopsora pachyrhizi collected in Tsukuba and vicinity in Ibaraki,Japan

Six races were identified among 26 single-lesion isolates of Phakopsora pachyrhizi from rust-infected leaves of nine samples of cultivated soybean and one sample of the wild host plant kudzu (Pueraria lobata) collected in Tsukuba and vicinity in Ibaraki, Central Honshu, Japan. Six races were detected on soybean cultivars and four races on kudzu. When two or more isolates obtained from the same samples were examined, the isolates were different races except from two samples. These results indicate that two or more races may be distributed on the same soybean cultivar and that the same races share soybean and kudzu hosts.     

Nickel-catalyzed carbonization of wood for coproduction of functional carbon and fluid fuels II: improved fuel quality of oil fraction and increased heating value of gas fraction

The yields and properties of oil and gas fractions coproduced during carbonization of larch wood loaded with Ni 2%, Ni 2%+Ca 1%, and Ni 4% and without catalyst (None) at 700°–900°C were examined to clarify the catalytic effect in terms of conversion into fluid fuels. The net calorific value of oil occurred mainly below 500°C and increased in the order None < Ni 2% < Ni 4% < Ni 2%+Ca 1%, while the yield decreased in this order. The same order held for the production of gases enriched with hydrogen at 500°–700°C. Even above 800°C, markedly promoted evolution of hydrogen took place for all catalyst systems. These observations confirmed the effectiveness of nickel-catalyzed carbonization at 900°C, particularly Ni 2%+Ca 1%, for both upgrading of oil and gaseous fractions, although the quality of oil was not satisfactory. The catalysis of nickel with and without calcium is discussed on the basis of the modified Broid-Shafizadeh scheme, and the scheme was altered to adapt to the high temperature region where oil was no longer produced. Part of this study was presented at the 14th Annual Meeting of the Japan Institute of Energy, Suita, August 2005, and at the 18th Symposium, Session D, of the Materials Research Society of Japan, Tokyo, December 2007     

Olfactory plasticity is regulated by pheromonal signaling in Caenorhabditis elegans

Population density-dependent dispersal is a well-characterized strategy of animal behavior in which dispersal rate increases when population density is higher. Caenorhabditis elegans shows positive chemotaxis to a set of odorants, but the chemotaxis switches from attraction to dispersal after prolonged exposure to the odorants. We show here that this plasticity of olfactory behavior is dependent on population density and that this regulation is mediated by pheromonal signaling. We show that a peptide, suppressor of NEP-2 (SNET-1), negatively regulates olfactory plasticity and that its expression is down-regulated by the pheromone. NEP-2, a homolog of the extracellular peptidase neprilysin, antagonizes SNET-1, and this function is essential for olfactory plasticity. These results suggest that population density information is transmitted through the external pheromone and endogenous peptide signaling to modulate chemotactic behavior.