Comparison of the nucleotide and amino acid sequences of parental and attenuated isolates of Zucchini yellow mosaic virus

To identify possible sites of viral attenuation, the complete nucleotide sequences of two isolates of Zucchini yellow mosaic virus (ZYMV) were determined; a severe isolate Z5-1 and an attenuated isolate from Z5-1 (designated ZYMV-2002). The viral genome of both isolates consisted of 9593 nucleotides in size and contained an open reading frame encoding a single polyprotein of 3080 amino acids. Comparison of the nucleotide sequences for Z5-1 and ZYMV-2002 revealed 14 nucleotide mutations, resulting in seven amino acid substitutions with four in the HC-Pro region, two in the CI region, and one in the NIb region. These results provide a genetic basis for future manipulation of the ZYMV reverse genetics system. The nucleotide sequence data reported are available in the DDBJ/EMBL/GenBank databases under the accession numbers AB188115 and AB188116     

Dairy cattle behavior classifications based on decision tree learning using 3‐axis neck‐mounted accelerometers

Demand has been increasing recently for an automated monitoring system of animal behavior as a tool for the management of livestock animals. This study investigated the association between the behavior of dairy cattle and the acceleration data collected using three‐axis neck‐mounted accelerometers, as well as the feasibility of improving the precision of behavior classifications through machine learning. In total 38 Holstein dairy cows were used, and kept in four different farms. A logger was mounted to each collar to obtain acceleration data for calculating the activity level and variations. At the same time the behavior of the cattle was observed visually. Characteristic acceleration waves were recorded for eating, rumination, and lying, respectively; and the activity level and variations were significantly different among these behaviors (p < 0.01). Decision tree learning was performed on the data set from Farm A and validated its precision; which proved to be 99.2% in cross‐validation, and 100% in test data sets from Farms B to D. This study showed that highly precise classifications for eating, rumination, and lying is possible by using decision tree learning to calculate the activity level and variations of cattle based on the data obtained by three‐axis accelerometers mounted to a collar.     

Spontaneous extraskeletal osteosarcoma with various histological growth patterns in the abdominal wall of an ICR mouse

Extraskeletal osteosarcoma is extremely rare in mice. This case report demonstrates a spontaneous murine extraskeletal osteosarcoma that exhibited various histological growth patterns in an ICR mouse. At necropsy, the tumor mass was located in the abdominal wall and was 45 × 30 × 25 mm in size. Histopathologically, the tumor showed the following four growth patterns: a solid pattern of polygonal cells embedded in an osteoid eosinophilic matrix with calcification, an irregular sheet pattern of short spindle cells accompanying some eosinophilic multinucleated cells, a fascicular pattern of spindle cells and a cystic pattern lined by short spindle cells. Immunohistochemically, most of the tumor cells were positive for vimentin, proliferating cell nuclear antigen and osterix. The multinucleated cells mentioned above were desmin positive and were regarded as regenerative striated muscles but not tumor cells. Since no clear continuity with normal bone tissues was observed, the tumor was diagnosed as an “extraskeletal osteosarcoma.”     

Characterization of myofibrillar adenosine triphosphatase activity and liberation of actin from myofibrils upon heating chicken breast meat

Denaturation of actin and myosin in myofibrils induced by heating at 50°C was investigated to reveal the mechanism of irreversible liberation of actin from myofibrils on heating at lower temperatures than conventional cooking. Denaturation of these proteins was determined by Mg²⁺‐ATPase (adenosine triphosphatase) and Ca²⁺‐ATPase activities. When minced meat was heated for 20 min, actin was liberated accompanying denaturation of 80% of actin and 50% of myosin. Heating of the myofibrillar fraction (MFF) isolated from meat homogenate induced much slower denaturation of actin than myosin. When MFF was heated with sarcoplasmic fractions, denaturation of actin was facilitated, suggesting that sarcoplasmic fractions contain factors to facilitate actin denaturation. Inosine‐5′‐monophosphate, a component of sarcoplasmic fractions, was shown to have no effect on actin and myosin denaturation. These results suggest that heating meat at 50°C dissociates binding (‘Bond A’) between actin and myosin participating in ATPase activities, resulting in denaturation of both proteins under influence of sarcoplasmic components. Although denaturation of actin and myosin disrupted Bond A, actin was not liberated simultaneously, suggesting the presence of another bond (‘Bond B’, more heat‐stable than Bond A) between both proteins and necessity of disruption of Bond B for actin release from myofibrils.     

Vibrational properties of wetwood of todomatsu (<Emphasis Type="Italic">Abies sachalinensis</Emphasis>) at high temperature

The object of this study was to understand precisely the drying characteristics of wetwood of todomatsu (Abies sachalinensis Mast.). For this purpose, the vibrational properties of wetwood of todomatsu at high temperature were compared with those of normal parts that had lower green moisture content than the wetwood. Specimens were cut respectively from the wetwood and normal parts, and matched in the radial direction. The specimens and the measuring systems were placed in an electric drying oven and free-free vibration tests were conducted in the oven under absolutely dry conditions. The wetwood and the normal parts were tested separately. The temperature was raised from room temperature to 200°C and then lowered to 50°C in steps of 25°C. The specific Young’s modulus decreased with an increase in temperature during the heating process while it increased with the decreasing temperature during the cooling process. There was no significant difference in the specific Young’s modulus between the wetwood and the normal part at all tested temperatures. The loss tangent took a minimum value at about 100°C in both the heating and cooling processes. There was no significant difference in the loss tangent between the wetwood and the normal part. Thus, the elastic and viscoelastic behaviors of the wetwood appear to be similar to those of the normal part in the temperature range of an actual kiln-drying process.     

Photosynthetic induction responses to variable light under field conditions in three species grown in the gap and understory of a Fagus crenata forest

Photosynthetic induction responses to abrupt increases in photon flux density (PFD) to 800 and 1500 &mgr;mol m(-2) s(-1) from either darkness or 100 &mgr;mol m(-2) s(-1) were examined in situ in leaves of Fagus crenata Blume, Daphniphyllum humile Maxim., and Acer rufinerve Siebold & Zucc. growing in a gap and the understory of an F. crenata forest. Among the species studied, F. crenata exhibited the highest assimilation rate (A(100)), stomatal conductance (g(s100)) at the background PFD of 100 &mgr;mol m(-2) s(-1), and A(100)/A(max) (A(max) = maximum assimilation rate), in both the gap and the understory. Time required for full induction depended on both background PFD and maximum PFD. The induction period was 2-4-fold shorter at a background PFD of 100 &mgr;mol m(-2) s(-1) than in darkness. For the three understory species, time required to full induction was 2-3-fold longer when irradiance was increased from darkness to 800 &mgr;mol m(-2) s(-1) than when irradiance was increased from darkness to 1500 &mgr;mol m(-2) s(-1). Acer rufinerve showed higher initial stomatal conductance (g(s0)) and a shorter induction period in the understory than in the gap. Fagus crenata exhibited a similar g(s0) and induction period in both habitats. Daphniphyllum humile demonstrated lower g(s0) and a longer induction period in the understory than in the gap. These findings indicate that initial stomatal conductance is closely correlated with the photosynthetic induction response. We conclude that the photosynthetic induction response is affected by the light conditions experienced by plants before the sudden increase in irradiance and by the extent of the increase in irradiance.     

Young’s modulus obtained by flexural vibration test of a wooden beam with inhomogeneity of density

The object of this study was to investigate the inhomogeneity of density within a beam from a relationship between the dynamic Young’s moduli from the Euler-Bernoulli elementary theory of bending (E _n) and resonance mode numbers (n), which is plotted as the “E-n” diagram in this article. Rectangular beams with dimensions of 300 (L) × 25 (R) × 5mm (T) of Sakhalin spruce (Picea glehnii Mast.), Sitka spruce (Picea sitchensis Carr.), Japanese red pine (Pinus densiflora Zieb. et Zucc.) and white oak (Cyclobalanopsis myrsinaefolia Oerst.) were used for specimens. Small parts of beams were replaced with a small portion of another species to examine the influence of the inhomogeneity of density on E _n. A free-free flexural vibration test was undertaken and E _n was calculated by the Euler-Bernoulli theory. The resonance frequency of a specimen with inhomogeneity of density was simulated by modal analysis. The density distribution in the longitudinal direction of the specimen for which E _n did not decrease monotonically with n was obtained. From the modal analysis, the inhomogeneity of density was equivalent to a concentrated mass attached to a uniform beam. The pattern of the E-n diagram was changed by replacing a part of the specimen with another species. Specimens for which E _n did not decrease monotonically with n had a high density part because of indented rings, knots, or resin.     

转型中的亚洲林业(续二)

在过去的20年里,亚洲林业经历了引人注目的转型,包括从计划经济到市场经济的转变,从天然林供给木材到人工林供给木材的转变,木材替代品与非木质林产品的增加,地方分权与当地群众的参与,生态时代的发展与生态系统管理。在促进亚洲可持续森林资源管理中,市场工具、社区参与和环境服务都得到了应用。亚洲林业的转型表现出多样化,其森林、社会与环境之间的联系是丰富多彩的。     

Factors affecting the dynamics of the population of Fagus crenata in the Takakuma Mountains, the southern limit of its distribution area

The refugee population of Fagus crenata in the Takakuma Mountains, Kyushu, Japan, represents the southern limit of this species' distribution area. Because this population is the most exposed to the global warming effect, records of this population are likely to provide useful information on the response of this species to global warming. The aim of this study was to record the present status of this valuable population, enabling judgment of its sustainability. The density of successive F. crenata trees and saplings was low regardless of the coverage of dwarf bamboo. Moreover, the proportion of empty nuts observed was considerably high, suggesting to be the likely major factor limiting recruitment of saplings or successors in this population. Radial growth of F. crenata was shown to have been decreasing for the past 50 years, and there was a significantly negative correlation with the warmth index. The decreasing growth rate and poor regenerative ability caused by the high proportion of empty nuts suggest the possibility that this population will degrade further in the future, possibly being replaced by shrubs and small tree species.     

Vertical, horizontal and azimuthal variations in leaf photosynthetic characteristics within a Fagus crenata crown in relation to light acclimation

An understanding of spatial variations in gas exchange parameters in relation to the light environment is crucial for modeling canopy photosynthesis. We measured vertical, horizontal and azimuthal (north and south) variations in photosynthetic capacity (i.e., the maximum rate of carboxylation: Vcmax), nitrogen content (N), leaf mass per area (LMA) and chlorophyll content (Chl) in relation to relative photosynthetic photon flux (rPPF) within a Fagus crenata Blume crown. The horizontal gradient of rPPF was similar in magnitude to the vertical gradient of rPPF from the upper to the lower crown. The rPPF in the north quadrant of the crown was slightly lower than in the south quadrant. Nitrogen content per area (Narea), LMA and Vcmax were strictly proportional to rPPF, irrespective of the vertical direction, horizontal direction and crown azimuth, whereas nitrogen content per dry mass, Chl per area and photosynthetic capacity per dry mass (Vm) were fairly constant. Statistical analyses separating vertical trends from horizontal and azimuthal trends indicated that, although horizontal and vertical light acclimation of leaf properties were similar, there were two significant azimuthal variations: (1) Vcmax was lower in north-facing leaves than in south-facing leaves for a given Narea, indicating low photosynthetic nitrogen-use efficiency (PNUE) of north-facing leaves; and (2) Vcmax was lower in north-facing leaves than in south-facing leaves for a given LMA, indicating low Vm of the north-facing leaves. With respect to the low PNUE of the north-facing leaves, there were no significant azimuthal variations in leaf CO2 conductance from the stomata to the carboxylation site. Biochemical analysis indicated that azimuthal variations in nitrogen allocation to ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) and in nitrogen allocation between carboxylation (Rubisco and other Calvin cycle enzymes) and light harvesting machinery (Chl pigment-protein complexes) were not the main contributor to the difference in PNUE between north- and south-facing leaves. Lower specific activity of Rubisco may be responsible for the low PNUE of the north-facing leaves. Anatomical analysis indicated that not only high leaf density, which is compatible with a greater fraction of non-photosynthetic tissue, but also thick photosynthetic tissue contributed to the low Vm in the north-facing leaves. These azimuthal variations may need to be considered when modeling canopy photosynthesis based on the Narea-Vcmax or LMA-Vcmax relationship.