Extraction of rice-planting area and identification of chilling damage by remote sensing technology: a case study of the emerging rice production region in high latitude

Rice is the second largest staple crop in the world and therefore plays an important role in food security. As a thermophilic crop, rice is sensitive to temperature changes. Thus, research on the chilling damage of rice is essential. The Sanjiang Plain is an emerging rice production area and is located at high latitudes in China, the world’s largest rice-producing country. Landsat data were used to extract rice-planting area from 1985 to 2015. MODIS 13Q1, which was uniformly distributed during the growing period of rice, was used to obtain NDVI values of paddies during 2002–2015. Dynamic Identification Index of sterile-type chilling damage and monitoring standard of delayed-type chilling damage were the proposed methods used in this paper, which were used to judge the chilling damage of rice. The results show that in the study region, the rice-planting area in 2015 is nearly 12 times larger than that in 1985. Delayed-type chilling damage occurred in 2002 and 2009, while sterile-type chilling damage occurred in 2005, 2006, 2009, 2010, 2014, and 2015. Comparing with the prevalent meteorological standards, the results indicate that the index and standards proposed in this paper are precise, applicable, and more sensitive than them. The method is a macroscopic and accurate method to identify chilling damage in rice and can also provide a scientific basis to ensuring the stability of rice yield.     

Sources and seasonal dynamics of inoculum for brown spot disease of pear

The dynamics of the production of Stemphylium vesicarium conidia and Pleospora allii ascospores from different inoculum sources on the ground were compared in a model system of a wildflower meadow mainly composed of yellow foxtail, creeping cinquefoil and white clover. The meadow was either inoculated (each October) or not inoculated with a virulent strain of S. vesicarium, and either covered or not covered with a litter of inoculated pear leaves. Spore traps positioned a few centimetres above the ground were exposed for 170 7-day periods between October 2003 and December 2006. Ascospores and conidia were trapped in 46 and 25% of samples, respectively. Ascospore numbers trapped from the pear leaf litter were about five times higher than those from the meadow, while conidial numbers were similar from the different inoculum sources. The ascosporic season was very long, with two main trapping periods: December–April, and August–October; the former was most important for the leaf litter, the latter for the meadow. The conidial season lasted from April to November, with 92% of conidia caught between July and September. The fungus persistently colonized the meadow: the meadow inoculated in early October 2003 produced spores until autumn 2006. The present work demonstrates that orchard ground is an important source of inoculum for brown spot of pear. Thus, it is important to reduce inoculum by managing the orchard ground all year long.     

Microcyclic conidiogenesis in powdery mildews and its association with intracellular parasitism by <Emphasis Type="Italic">Ampelomyces</Emphasis>

Microcyclic conidiogenesis (MC), a process defined as the production of conidia on a spore without any, or only a minimal, involvement of hyphal growth, has recently been reported in a little known powdery mildew species, Oidium longipes. To investigate whether this was an isolated case or it is a more general phenomenon in powdery mildew fungi, germinating conidia of eight species of the Erysiphales were examined using light microscopy. The following species were included in this work: Erysiphe necator on grapevine, Blumeria graminis f. sp. hordei on barley, Podosphaera xanthii on cucumber, Erysiphe sp. on Ligustrum vulgare, O. longipes on Petunia x grandiflora, O. neolycopersici on tomato, Golovinomyces cichoracearum on Rudbeckia laciniata and Sawadaea sp. on Acer negundo. In all these species, up to 4% of the germinated conidia exhibited MC. Moreover, when colonies of E. necator and O. neolycopersici, on detached grapevine and tomato leaves, respectively, were treated with a conidial suspension of Ampelomyces, the intracellular pycnidia of these mycoparasites appeared in microcyclic conidiophores. This represents a yet undescribed method of accelerating asexual reproduction in this mycoparasite. In the life cycle of powdery mildews, the importance of MC is still not clear but it should be taken into consideration when conidial germination is studied on the host surface for purposes such as epidemiology or species identification.     

Growth,biomass partitioning,and water-use efficiency of a leguminous shrub (<Emphasis Type="Italic">Bauhinia faberi</Emphasis> var. <Emphasis Type="Italic">microphylla</Emphasis>) in response to various water availabilities

Responses of the endemic leguminous shrub Bauhinia faberi var. microphylla, to various soil water supply regimes were studied in order to assess water stress tolerance of seedlings. Two-month-old seedlings were grown under water supply regimes of 100, 80, 60, 40, and 20% water field capacity (FC), respectively, in a temperature and light-controlled greenhouse. Plant height and leaf number were measured monthly over a 4-month period, while water use (WU), water-use efficiency (WUE), leaf relative water content (RWC), biomass production and its partitioning were recorded at the end of the experiment. Seedlings exhibited the greatest biomass production, height, basal diameter, branch number, leaf number, and leaf area when soil content was at 100% FC, and slightly declined at 80% FC. These parameters declined significantly under 60% FC water supply, and severely reduced under 40 and 20% FC. RWC, WU and WUE decreased, while the ratio of root mass to stem mass (R:S) increased in response to decreasing water supply. Water stress caused leaf shedding, but not plant death. The results demonstrated that B. faberi var. microphylla seedlings could tolerate drought by reducing branching and leaf area while maintaining a high R:S ratio. However, low dry mass and WUE at 40 and 20% FC suggested that the seedlings did not produce significant biomass under prolonged severe water deficit. Therefore, before introducing B. faberi var. microphylla in vegetation restoration efforts, water supply above 40% FC is recommended for seedlings to maintain growth.     

Pathogenicity determinants in smut fungi revealed by genome comparison

Biotrophic pathogens, such as the related maize pathogenic fungi Ustilago maydis and Sporisorium reilianum, establish an intimate relationship with their hosts by secreting protein effectors. Because secreted effectors interacting with plant proteins should rapidly evolve, we identified variable genomic regions by sequencing the genome of S. reilianum and comparing it with the U. maydis genome. We detected 43 regions of low sequence conservation in otherwise well-conserved syntenic genomes. These regions primarily encode secreted effectors and include previously identified virulence clusters. By deletion analysis in U. maydis, we demonstrate a role in virulence for four previously unknown diversity regions. This highlights the power of comparative genomics of closely related species for identification of virulence determinants.     

Climate change affects soil labile organic carbon fractions in a Tibetan alpine meadow

Purpose

Changes in bioactive soil C pools and their temperature sensitivities will dominate the fate of soil organic C in a warmer future, which is not well understood in highland ecosystems. This study was conducted in order to evaluate climate change, especially cooling effects, on soil labile organic C (LOC) pools in a Tibetan alpine meadow.

Materials and methods

A short-term reciprocal translocation experiment was implemented to stimulate climate warming (downward translocation) and cooling (upward translocation) using an elevation gradient on the Tibetan Plateau. Variations in soil microbial biomass C (MBC), dissolved organic C (DOC) and LOC were analyzed.

Results and discussion

Over the range of soil temperature from 0.02 to 5.5 °C, warming averagely increased soil MBC, DOC and LOC by 15.3, 17.0 and 3.7 % while cooling decreased them by 11.0, 11.9 and 3.2 %, respectively. Moreover, warming generally increased the proportion of DOC in LOC but cooling had an opposite effect, while the response of the MBC proportion to DOC and LOC varied depending on vegetation type. Soil MBC, DOC and LOC pools were positively related to soil temperature and showed a hump-shaped relationship with soil moisture with a threshold of about 30–35 %. Although soil DOC was more sensitive to warming (5.1 % °C^?1) than to cooling (3.0 % °C^?1), soil LOC showed a symmetrical response due to regulation by soil moisture.

Conclusions

Our results indicated that climate change would not only change the size of soil LOC pools but also their quality. Therefore, cooling effects and regulation of soil moisture should be considered to evaluate the fate of soil organic C in Tibetan alpine meadows in a warmer future.

     

Responses of native legume desert trees used for reforestation in the Sonoran Desert to plant growth-promoting microorganisms in screen house

Three slow-growing legume trees used for desert reforestation and urban gardening in the Sonoran Desert of Northwestern Mexico and the Southwestern USA were evaluated whether their growth can be promoted by inoculation with plant growth-promoting bacteria (Azospirillum brasilense and Bacillus pumilus), unidentified arbuscular mycorrhizal (AM) fungi (mainly Glomus sp.), and supplementation with common compost under regular screenhouse cultivation common to these trees in nurseries. Mesquite amargo (Prosopis articulata) and yellow palo verde (Parkinsonia microphylla) had different positive responses to several of the parameters tested while blue palo verde (Parkinsonia florida) did not respond. Survival of all tree species was over 80% and survival of mesquite was almost 100% after 10 months of cultivation. Inoculation with growth-promoting microorganisms induced significant effects on the leaf gas exchange of these trees, measured as transpiration and diffusive resistance, when these trees were cultivated without water restrictions.     

The effects of distance from coral reefs on seagrass nursery use by 5 emperor fishes at the southern Ryukyu Islands,Japan

Whilst the importance of seagrass beds as nurseries for coral reef fishes has been clearly recognized, the vast majority of early studies on fish nursery habitats emphasized the close proximity of the latter to coral reefs. To determine the potential nursery role of isolated seagrass beds, we investigated the degree to which juvenile emperor fishes (Lethrinidae) utilized seagrass beds in the presence/absence of adjacent coral habitats at Ishigaki Island (southern Japan), such fishes being known to use seagrass beds as nurseries. Seagrass beds in close proximity to coral habitats (distance between the two habitats of 50–200 m) had greater densities of lethrinid juveniles than those without adjacent coral habitats (2.5–4 km) for 3 different sites investigated, although a significant difference was obtained only for 1 site. Juveniles of Lethrinus atkinsoni, L. obsoletus, L. harak, and L. nebulosus were observed in seagrass beds with and without adjacent coral habitats, whereas L. ornatus occurred only in the former. Overall, most lethrinid juveniles utilize seagrass beds irrespective of the presence of adjacent adult coral habitat, suggesting that both types of seagrass beds would contribute to lethrinid adult populations. Therefore, management efforts for lethrinid populations should be applied not only to contiguous coral-seagrass habitat systems but also to isolated habitats.     

Treatment additives reduced arsenic and cadmium bioavailability and increased 1,2-dichloroethane biodegradation and microbial enzyme activities in co-contaminated soil

Purpose

Bioremediation of co-contaminated environments is difficult because of the mixed nature of the contaminants and the fact that the two components often must be treated differently. This study investigated the use of inorganic treatment additives, namely calcium carbonate (CaCO₃), gypsum (CaSO₄·2H₂O), and disodium phosphate (Na₂HPO₄) to improve remediation of soil co-contaminated with 1,2-dichloroethane (1,2-DCA) and arsenic or cadmium.

Materials and methods

The soil samples were collected from a specific site in the Westville area in Durban, KwaZulu-Natal, South Africa. Microcosms were set up by artificially co-contaminating the soil sample (100 g mixed with 75 ml of synthetic groundwater in sterile screw-capped 250-ml serum bottles) with 1,2-DCA + risk elements; As³⁺ (150 mg/kg); or Cd²⁺ (170 mg/kg). Thereafter, each microcosm was amended with either 5 g CaCO₃, 2 g CaSO₄·2H₂O, or 1.12 g Na₂HPO₄ + 0.046 g NaCl, separately. The samples were analyzed for the degradation of 1,2-DCA using GC–MS, while total 1,2-DCA degrading bacterial populations were determined at different sampling times using a standard spread plate technique. Soil dehydrogenase and urease activities were also monitored during the experimental period using standard enzyme assays.

Results and discussion

Addition of CaCO₃ resulted in an approximately 2-fold increase in 1,2-DCA degradation in both the As³⁺ and the Cd²⁺ co-contaminated soil as compared to the co-contaminated soil without CaCO₃. All the treatment additives were more effective in the As³⁺ co-contaminated soil resulting in 11.19, 9.25, and 5.63% increase in 1,2-DCA degradation in the presence of CaCO₃, Na₂HPO₄ + NaCl, and CaSO₄·2H₂O, respectively, compared to the Cd²⁺ co-contaminated soil. The total 1,2-DCA degrading bacterial population increased in treated soils over time. Overall, soil dehydrogenase and urease activities were lower in the heavy metal co-contaminated samples compared to the treated soil. The inhibitory effect of heavy metal was less in As³⁺ co-contaminated soil for both CaCO₃- and Na₂HPO₄ + NaCl-treated soil, with up to 7.92% increase in dehydrogenase activity obtained compared to soil co-contaminated with Cd²⁺.

Conclusions

Results from this study indicate that treatment additives can be used to reduce bioavailable fractions of risk elements in the soil matrices, thereby limiting the toxicity of these risk elements to 1,2-DCA degrading microorganisms. Thus, this approach can be applied to enhance organic compound degradation in co-contaminated soil environments.

     

Identification and characterization of EST-SSRs in finger millet (<Emphasis Type="Italic">Eleusine coracana</Emphasis> (L.) Gaertn.)

In recent years, microsatellites have become the most used markers for studying population genetic diversity. The increased availability of the DNA sequences has given the possibility to develop EST-derived SSR markers. A total of 1,927 ESTs of Eleusine coracana available in the NCBI database were mined for SSRs. Di-nucleotides are the most occurring motifs accounting for more than 50% of the repeats, of which GA was the most abundant motif and tetra-nucleotides are the least occurring motifs. Of the 132 markers identified, 30 primer pairs based were synthesized. SSR markers were used for variety discrimination and genetic assessment in 15 finger millet accessions; 20 primers showed polymorphism and 13 primers were identified as having a PIC value above 0.5. On the basis of the distribution of these polymorphic alleles, the 15 accessions were classified into two groups. This study has demonstrated the potential of EST-derived SSR primer pairs in finger millet. These primers will serve as valuable source for further breeding programs.