Development of EST‐SSR markers for diversity and breeding studies in opium poppy

All publicly available opium poppy expressed sequence tag (EST) sequences, totalling 20 885, were assembled into unigenes and examined for simple sequence repeats (SSRs). Nearly 19% of the 14 957 unigenes contained SSRs with 4% harbouring more than one SSR. Average density of the SSRs was 1 SSR per 3.6 kb of non‐redundant EST sequence. Trinucleotide SSRs were most frequently identified (39%), and many of the most prevalent motifs were AT‐rich. Flanking primers were designed for 86% of the SSRs and 67 primer pairs were tested on 37 opium poppy accessions and seven related species. All markers were transferable to the related species. Polymorphism information content (PIC) values for the markers were intermediate for comparisons within opium poppy (average of 0.27) and slightly higher for comparisons across species (average of 0.29). The markers were found to be useful for diversity analysis as they successfully distinguished among Turkish opium poppy accessions and land races.     

Genetic studies on saline and sodic tolerances in soybean

Salt-affected soils are generally classified into two main categories: saline and sodic (alkaline). Developing and using soybean (Glycine max (L.) Merr) cultivars with high salt tolerance is an effective way of maintaining sustainable production in areas where soybean growth is threatened by salt stress. Early classical genetics studies revealed that saline tolerance was conditioned by a single dominant gene. Recently, a series of studies consistently revealed a major quantitative trait locus (QTL) for saline tolerance located on linkage group N (chromosome 3) around the SSR markers Satt255 and Sat_091; other minor QTLs were also reported. In the case of sodic tolerance, most studies focused on iron deficiency caused by a high soil pH, and several QTLs associated with iron deficiency were identified. A wild soybean (Glycine soja Sieb. & Zucc.) accession with high sodic tolerance was recently identified, and a significant QTL for sodic tolerance was detected on linkage group D2 (chromosome 17). These studies demonstrated that saline and sodic tolerances were controlled by different genes in soybean. DNA markers closely associated with these QTLs can be used for marker-assisted selection to pyramid tolerance genes in soybean for both saline and sodic stresses.     

Aboveground biomass increment and stand dynamics in tropical evergreen broadleaved forest

Forest ecosystems can modify the atmospheric CO₂ through biomass accumulation mostly in tree stems with diameter at breast height (DBH) ≥ 10 cm. Aboveground biomass increment (ΔAGB), and changes in stand AGB, no. stems and basal area (BA) were calculated from mortality, recruitment, and growth data of tree stems in tropical evergreen broadleaved forest, Central Highland Vietnam. Data were derived from ten 1-ha permanent plots established in 2004, where all stems with DBH ≥ 10 cm were tagged, identified to species, and measured for DBH in 2004 and 2012. In an 8-year duration, the increment was 53 ± 10 stems ha^–1, 7.8 ± 0.3 m² ha^–1 for BA and 86.0 ± 4.6 Mg ha^–1 for AGB. The stem mortality rate was 0.9% year^–1 and the stem recruitment rate was 2.2% year^–1. Annual ΔAGB was 10.8 Mg ha^–1 year^–1, equaling to 5.4 Mg C ha^–1 year^–1. Of which, tree stems of 35–80 cm DBH classes accounted for 65%. The results indicated that the forest is in stage of carbon sequestration. Any disturbances causing death of 35–80 cm DBH tree stems will much reduce carbon sequestration capacity and it will take a long time for AGB to return to pre-disturbance stage.     

Heterobasidion abietinum on Abies species in western Turkey

Forty‐five basidiocarp specimens of Heterobasidion were collected from native Abies species in three locations in western Turkey: A. nordmanniana ssp. bornmülleriana in Bolu province, A. nordmanniana ssp. equi‐trojani in Balikesir province and A. cilicica in Antalya province. Pure cultures were isolated from the basidiocarps and identified to the species level with the aid of mating tests. All the specimens proved to belong to the species Heterobasidion abietinum. This root rot fungus is common in the forests investigated and appears to be relatively virulent on Abies in Turkey. This is the first report of H. abietinum outside Europe.     

Main Characteristics of Statistical Data and the Statistical System for Wood and Wood-processing Products in Vietnam

This paper describes the characteristics of data about wood and wood-processing products published in Vietnam. The characteristics include inconsistency of data published by major data sources, lack of necessary data, and irregular publication frequency. Reasons are identified for the existence of the above characteristics of data for the wood and wood-processing industries, including recent changes in the functions of state statistical organizations and unclear concepts of data published. These characteristics create difficulties for researchers and policy-makers working at the Ministry of Agriculture and Rural Development for analysing policies and establishing supply targets for the wood and wood-processing industries in 5-year economic plans. To improve the statistical system, co-operation between state organisations and the information network (e.g. computers and internet connection) requires strengthening.     

Functional expression of geraniol 10-hydroxylase reveals its dual function in the biosynthesis of terpenoid and phenylpropanoid

Geraniol 10-hydroxylase (G10H), a cytochrome P450 monooxygenase, has been reported to be involved in the biosynthesis of terpenoid indole alkaloids. The gene for Catharanthus roseus G10H (CrG10H) was cloned and heterologously expressed in baculovirus-infected insect cells. A number of substrates were subjected to assay the enzyme activity of CrG10H. As reported in a previous study, CrG10H hydroxylated the monoterpenoid geraniol at the C-10 position to generate 10-hydroxygeraniol. Interestingly, CrG10H also catalyzed 3'-hydroxylation of naringenin to produce eriodictyol. Coexpression of an Arabidopsis NADPH P450 reductase substantially increased the ability of CrG10H to hydroxylate naringenin. The catalytic activity of CrG10H was approximately 10 times more efficient with geraniol than with naringenin, judged by the k(cat)/K(m) values. Thus, G10H also plays an important role in the biosynthetic pathway of flavonoids, in addition to its previously described role in the metabolism of terpenoids.     

Mapping of quantitative trait loci controlling seedling vigor in rice (Oryza sativa L.) under submergence

Submergence-induced suppression of seedling vigor is a serious constraint particularly in the direct seeding rice cultivation system. To identify quantitative trait loci (QTLs) associated with seedling vigor in rice under submergence, a mapping population of 98 Backcross Inbred Lines derived from a cross of Nipponbare/Kasalath//Nipponbare was used. Phenotypic evaluation of seedling vigor under submergence was based on shoot length (SHL), root length (RTL) and shoot fresh weight (SFW) using a test tube bioassay method. Thirty-two putative QTLs were detected among which 7 were for SHL, 11 for RTL and 14 for SFW. Phenotypic evaluation was also made of the parental lines and a set of 54 chromosome segment substitution lines in which Nipponbare segments were substituted for by their homologous Kasalath segments covering the entire rice genome. Two QTLs with more than 10 % contribution to the total phenotypic variance were verified for SHL, and at least one for RTL and six for SFW on chromosomes 1, 3, 4, 6 and 7 at the 1 % significance level. Among these, all but two showed reductions in one, two or all three traits. Our present and previous results suggest that the Nipponbare genome has a potential to improve seedling vigor under submergence and that japonica germplasms can be used to breed for this important trait in indica rice.     

Detection and molecular characterization of sugarcane grassy shoot phytoplasma in Vietnam

Sugarcane is an important cash crop in Vietnam and has been widely promoted at national and provincial level. In 2006, a new disease was discovered in sugarcane in the Nghean Tate&Lyle Sugar Mill in Nghean Province in north-central Vietnam. The key symptoms were the formation of green grassy shoots around the base of mature stools. We applied nested polymerase chain reaction (PCR) using P1/P7 and R16F2n/R16R2 for detection and characterization of phytoplasma from the symptomatic tissues. PCR products of the expected size (approx. 1200?bp) were obtained from the 16S rDNA of the phytoplasma. The restriction fragment length polymorphism profiles indicated that all samples were infected by the same phytoplasma. Phylogenetic analysis confirmed that the SCGS phytoplasma from Vietnam belong to the 16SrXI group, formerly Rice Yellow Dwarf group.     

Note: First record of the eucalyptus gall wasp<Emphasis Type="Italic">Ophelimus maskelli</Emphasis> and its parasitoid,<Emphasis Type="Italic">Closterocerus chamaeleon</Emphasis>, in Turkey

The Eucalyptus gall waspOphelimus maskelli (Ashmead) (Hymenoptera: Chalcidoidea: Eulophidae: Ophelimini) and its introduced parasitoidClosterocerus chamaeleon (Hymenoptera: Chalcidoidea: Eulophidae: Entedoninae) are recorded for the first time in the Mediterranean and Aegean Regions of Turkey. Some morphological characters of adult and larva ofO. maskelli and larva ofC. chamaeleon are described and illustrated. Distributions of the two wasps collected in Turkey are given. Results indicate that the biological control agent,C. chamaeleon, has spread over 1,300 km in the 16 months since its initial release.     

Abnormal changes in both mandibular salivary glands in a dog: Non-mineral radiopaque sialoliths

A 10-year-old Maltese dog was presented with a firm mass on the left side of his neck. Physical examination confirmed a firm mass in the left and a submandibular swelling in the right cervical region. Sialolithiasis and associated sialocele in both mandibular salivary glands were suspected and bilateral sialoadenectomy was performed. The stones were identified as non-mineral sialoliths.