Identifying and exploring significant genomic regions associated with soybean yield,seed fatty acids,protein and oil

Soybean [Glycine max (L.) Merrill] yield and seed fatty acids, protein, and oil content are important traits for which an improved understanding of significant genomic regions would be useful. To accomplish this, a soybean population consisting of 203 F5 derived recombinant inbred lines (RILs) was developed and genotyped with 11,633 polymorphic single nucleotide polymorphisms (SNPs). Each RIL was grown in a single plot at Knoxville, TN in 2010; followed by replicated, multi-location field trials in 2013 and 2014. The data from 2010, 2013, and 2014 were analyzed together in order to detect quantitative trait loci (QTL) for these traits, and 30 total QTLs were detected. Five QTLs are candidates for confirmed status and one QTL is a candidate for positional confirmation. Many of the genes with mutations in close proximity to the fatty acid QTLs are involved in biological processes for fatty acids and/or lipids and could be considered possible candidate genes. Similarly, genes with mutations in genomic regions near yield, protein, and oil QTLs were plentiful and may contribute to the variation observed in these traits. Except for yield and stearic acid, each trait displayed pleiotropic effects with other traits in this study. Notable are the pleiotropic effects for oleic and linolenic acid on chromosomes 9, 13, and 19. Overall, the findings from this research contribute new information to the genetic understanding of soybean yield and seed fatty acids, protein and oil content. This understanding will be useful in making trait improvements.     

Impact odorants contributing to the fungus type aroma from grape berries contaminated by powdery mildew (Uncinula necator); incidence of enzymatic activities of the yeast Saccharomyces cerevisiae

Powdery mildew due to the fungus Uncinula necator is an important disease for the vineyard. The development of the fungus at the surface of the berries leads to the occurrence of a very characteristic and sometimes intense mushroom-type odor cited as an important default for grapes quality. Gas chromatography/olfactometry, gas chromatography, and multidimensional gas chromatogaphy/mass spectrometry techniques were used to investigate the most important odorants of grapes diseased by powdery mildew. Among 22 odorants detected, strongly odorant compounds were identified or tentatively identified in purified extracts obtained from grapes diseased by powdery mildew. Aroma extraction dilution analysis (AEDA) analysis revealed that 1-octen-3-one (mushroom odor), (Z)-1,5-octadien-3-one (geranium-leaf odor), and an unidentified odorous zone (fishy-mushroom like odor) were the most potent volatiles of the diseased grapes. In the presence of nonproliferating Saccharomyces cerevisiae yeast cells, and consequently during alcoholic fermentation, the enzymatic reduction of 1-octen-3-one and (Z)-1,5-octadien-3-one to much less odorant compounds, namely 3-octanone and (Z)-5-octen-3-one, was shown. Those results explain to some extent the disappearance of the fungal aroma specific to powdery mildew grapes during alcoholic fermentation.     

Development of the polysaccharidic matrix in biocrusts induced by a cyanobacterium inoculated in sand microcosms

Soil inoculation with cyanobacteria (cyanobacterization) is a biotechnological method widely studied to improve soil quality and productivity. During their growth on soil, cyanobacteria excrete exopolysaccharides (EPSs) which glue trichomes to soil particles, in a three-dimensional extracellular polymeric matrix. EPS productivity is an important screening parameter to select proficient inoculants and is affected by growth conditions and abiotic stresses. In this study, we evaluated the capability of the cyanobacterium Schizothrix cf. delicatissima AMPL0116 to form biocrusts when inoculated in sand microcosms under stressing conditions, and the characteristics of the synthesized polymeric matrix. In parallel, we evaluated the characteristics of exopolysaccharidic exudates of the strain when grown in liquid culture, under optimal growth setting. Our results pointed out at significant differences of the exopolymers produced in the two conditions in terms of monosaccharidic composition and molecular weight distribution, and proved the capability of S. cf. delicatissima AMPL0116 to form stable bioaggregates on sandy soils.     

Improved water repellency of black spruce wood surfaces after treatment in carbon tetrafluoride plasmas

Plasma treatments for black spruce wood (Picea mariana (Mill.) B.S.P.), a widespread forest species from Canada, were carried out in order to waterproof the exposed surfaces. Experiments were performed using inductively coupled argon plasma with carbon tetrafluoride as the gaseous precursor for plasma-enhanced chemical vapor deposition of functional fluoropolymer coatings on wood. Analysis of the wettability through water contact angle measurements showed water-repellent characteristics, with static contact angles up to 130° depending on plasma exposure time, CF₄ concentration in the Ar/CF₄ plasma, and plasma source-to-substrate distance. X-ray photoelectron spectroscopy investigations of plasma-treated wood surfaces confirmed the growth of a thin, fluorocarbon layer with fluorine atomic concentrations close to 50 % on highly hydrophobic wood surfaces. Estimation of the thickness of the coatings by stylus profilometry revealed that a minimum layer thickness of about 80 nm is required to obtain water repellant wood surfaces with minimum water uptake. This complete set of data indicates that fluorocarbon-containing plasmas represent a very promising approach for improving the durability of wood products in wet and humid conditions.     

Aeta Magbukún of Mariveles: Traditional Indigenous Forest Resource Use Practices and the Sustainable Economic Development Challenge in Remote Philippine Regions

The Aeta Magbukún of Mariveles are one of the least known and researched Indigenous peoples remaining on the fringe of the bay, and within the remaining forests in Bataan province on Luzon Island in the Philippines. This work describes the unique cultural systems and language of the Aeta Magbukún tribe in Biaan, Mariveles, and both the traditional forest resource use and the evolving new subsistence practices developed to adapt to the encroachment of non-Indigenous peoples onto ancestral lands. The Aeta's forest resource use practices are discussed from a sustainable Indigenous development context within unique socioeconomic, cultural, and environmental circumstances in Bataan.     

Effect of shade on biomass accumulation and partitioning for Eucalyptus camaldulensis sprouts

ABSTRACT

Eucalyptus is widely cultivated in homogeneous monocultures throughout the world alongside plants of the same age. Furthermore, the productivity of forest stands is highly dependent on how solar radiation is intercepted and used. Meanwhile, it is possible to consider cultivating trees of different ages in the same area, and thus under different regimes of available solar radiation, creating a sequence of plantings and harvestings and to develop Eucalyptus-based agroforestry systems. We have examined biomass accumulation of Eucalyptus camaldulensis along a shade gradient. Eucalyptus trees presented power-law responses to increasing irradiance for biomass, indicating it has low plasticity and is unable to maintain growth under lower irradiance levels. Biomass partitioning showed no dependence on available irradiation. Leaf density presented very little increase toward sunnier places meaning that an increment in Eucalyptus biomass would be mostly due to its increase in size and thus higher radiation interception. Careful management of shade will be a key consideration for the integration of Eucalyptus into agroforestry. With knowledge of the growth habits of different species, we will have the potential to propose more perennial ways in which to manage land and reduce anthropogenic disturbances by avoiding clear-cuts of areas that removes all plant structures.     

The relative importance of dispersal limitation and habitat preference in shaping spatial distribution of saplings in a tropical moist forest: a case study along a combination of hydromorphic and canopy disturbance gradients

• Introduction   

Various processes contribute to shaping the local assemblage of species in hyperdiverse tropical forest. The relative contribution of environmental factors and dispersal limitation in determining the spatial distribution of saplings at local scale is unclear.     

Ranking temperate woody species along a gradient of browsing by deer

As a result of diverse management policies, densities of red and roe deer have varied considerably for the last few decades in Europe. Their selective browsing on woody species can modify the interactions between competing species and thus change overall patterns of plant diversity in forests. However, no classification of woody species according to browsing by deer yet exists in Europe. The selectivity index, which measures the balance between availability and consumption of plant species by herbivores, could be used for such a classification. The aim of this study was, first, to rank woody species according to this selectivity index, then to test whether their rank changed when browsing pressure varied in space or time. We also explored morphological and ecological life traits (Ellenberg indicator values) that might explain differences in selectivity.In 2006, we re-sampled a network of 217 coupled floristic and browsing survey plots, which had been previously described twice (1976, 1981). The plots were located in the forest of Arc-en-Barrois (France), a large woodland area divided into a North and a South Forest which have had different histories of browsing pressure.For the three samples and the two forests, we calculated a selectivity index for 19 woody species. Dogwood (Cornus sp.) and field rose (Rosa arvensis) appeared to be the most selected species whereas beech (Fagus sylvatica), common mezereon (Daphne mezereum) and wild-service tree (Sorbus torminalis) were always avoided. The rank order of species according to their selectivity index remained stable over the three sample years and between the two forests (Spearman's rank correlations: ρ ≈ 0.8 spatially, and range from 0.3 to 0.8 temporally). This indicates that variations in browsing pressure did not strongly modify deer selectivity patterns. Selectivity was positively correlated with wood density and negatively correlated with maximum height of the species, but unrelated to other plant traits. Finally, selectivity can be seen as an intrinsic characteristic of those woody species, and could be used as an additional life trait when analyzing vegetation communities.