Development and utilization of novel SSRs in foxtail millet [Setaria italica (L.) P. Beauv.]

Although the foxtail millet [Setaria italica (L.) P. Beauv.] is recently regarded as a model crop for studying functional genomics of biofuel grasses, its genetic improvement to some extent was limited due to the non‐availability of molecular markers, particularly the microsatellite markers and the saturated genetic linkage map. Considering this, we attempted to generate a significant number of microsatellite markers in cultivar ‘Prasad’. Two hundred and fifty‐six clones were sequenced to generate 41.82‐kb high‐quality sequences retrieved from genomic library enriched with dinucleotide repeat motifs. Microsatellites were identified in 194 (76%) of the 256 positive clones, and 64 primer pairs (pp) were successfully designed from 95 (49%) unique SSR‐containing clones. The 67.4% primer designing ability, 100% PCR amplification efficiency and 45.3% polymorphic potential in the parents of F₂ mapping population established the efficacy of genomic microsatellites. All the 64 microsatellite markers displayed high level of cross‐species amplification (~67%) in 10 millets and non‐millets species. These experimental findings suggest the utility and efficacy of SSRs in diverse genotyping applications, resolving QTLs, phylogenetic relationships and transferability in several important grass species.     

Selection of Yield-Associated Morphological and Biochemical Traits Using Correlation and Path Coefficient Analysis in Potato (<Emphasis Type="Italic">Solanum tuberosum</Emphasis> L.) in the Foothills of North-Western Himalayas

The objective of the study was to assess the direct and indirect effects of 13 important morphological and biochemical traits on yield enhancement in 28 advanced breeding lines of potato (Solanum tuberosum L.) in the foothills of north-western Himalayas. Tuber yield was positively correlated with number of tubers per plant (r?=?0.76), number of stems per plant (r?=?0.53), number of leaves per plant (r?=?0.43) and tuber weight (r?=?0.37). Furthermore, tuber yield exhibited a significant negative correlation with days to maturity (r?=???0.39). Days to 50% emergence had a significant negative correlation with protein content (r?=???0.42). Path analysis revealed that the components of yield, number of tubers per plant and tuber weight, had high positive direct effects (0.876 and 0.618, respectively) on tuber yield, whereas the effects of other traits were low (≤?0.128). Furthermore, tuber weight had an indirect negative effect on tuber yield through the number of tubers. Tuber size had a low correlation (0.19) with tuber yield because a positive indirect effect (0.451) through tuber weight was balanced by a negative indirect effect (??0.254) through tuber number. The number of stems and number of leaves had positive indirect effects (0.377 and 0.377, respectively) on tuber yield through tuber numbers, whereas days to maturity had a negative indirect effect (??0.298) through tuber numbers. There were virtually no indirect effects through the biochemical traits. The implications for potato breeding are discussed.     

Transformation of Sucrose to Starch and Protein in Rice Leaves and Grains under Two Establishment Methods

Six rice varieties, PR120, PR116, Feng Ai Zan, PR115, PAU201 and Punjab Mehak 1 were raised under aerobic and transplanting conditions to assess the effects of planting conditions on sucrose metabolising enzymes in relation to the transformation of free sugars to starch and protein in flag leaves and grains. Activities of sucrose synthase, sucrose phosphate synthase and acid invertase increased till flowering stage in leaves and mid-milky stage(14 d after flowering) in grains and thereafter declined in concomitant with the contents of reducing sugar. Under aerobic conditions, the activities of acid invertase and sucrose synthase(cleavage) significantly decreased in conjunction with the decrease in non-reducing sugars and starch content in all the varieties. Disruption of starch biosynthesis under the influence of aerobic conditions in both leaves and grains and the higher build up of sugars possibly resulted in their favoured utilization in nitrogen metabolism. Feng Ai Zan, PR115 and PR120 maintained higher levels of sucrose synthase enzymes in grains and leaves and contents of metabolites(amino acid, protein and non-reducing sugar) under aerobic conditions, while PR116, Punjab Mehak 1 and PAU201 performed better under transplanting conditions, thus showing their adaptation to environmental stress. Yield gap between aerobic and transplanting rice is attributed primarily to the difference in sink activity and strength. Overall, it appear that up-regulation of sucrose synthase(synthesis) and sucrose phosphate synthase under aerobic conditions might be responsible in enhancing growth and productivity of rice varieties.     

Donors for Resistance to Brown Planthopper Nilaparvata lugens(St?l) from Wild Rice Species

Out of 1 989 wild accessions sown in seed boxes for screening, only 1 003 wild accessions with good germination were screened against brown planthopper(BPH), Nilaparvata lugens(St?l) under greenhouse conditions. The collection comprised of accessions from 11 wild species and African cultivated rice. The germplasm was screened for BPH following standard seed box screening technique in the greenhouse. As many as 159 accessions were identified as resistant during the year 2012 based on one year screening. A selected set of BPH resistant accessions were screened again during 2013. Based on the two years screening, seven accessions of O. nivara(AA), one accession of O. officinalis(CC), seven accessions of O. australiensis(EE), five accessions of O. punctata(BB and BBCC) and nine accessions of O. latifolia(CCDD) were confirmed to be resistant to BPH. So far no BPH resistance genes have been identified and designated from O. nivara and O. punctata, hence these may act as new sources of resistance.     

Cloning, nucleotide sequence and phylogenetic analyses, and tissue-specific expression of the transferrin gene in Cirrhinus mrigala infected with Aeromonas hydrophila

Transferrin partial complementary DNAs were cloned from the livers of five species in four genera of Indian carps (Indian major carp species: Labeo rohita, Catla catla and Cirrhinus mrigala; medium carp: Puntius sarana; minor carp: Labeo bata) subsequent to polymerase chain reaction amplification with published heterologous primers or self-designed primers derived from conserved regions of transferrin cDNA sequences. The partial transferrin cDNAs of the five species of carps had sizes from 624 to 633 bp (487 bp for L. rohita) and encoded an open reading frame consisting of 206–211 (162 for L. rohita) amino acids. The alignments of carp cDNA sequences showed 85–97% homology and 71–93% homology in deduced amino acid sequences. A phylogenetic tree of amino acid sequences of transferrin cDNAs from carps showed that the relationship among the four genera of Indian carps is well correlated with that derived from classic morphologic analyses. The hypothesized cleavage site and interdomain bridge of transferrin molecule were predicted for the above carp species and interestingly the cleavage site amino acid sequence was found to be conserved among all the carps. To study the tissue-specific expression of the transferrin gene, various tissues (liver, kidney, spleen, brain, muscle, testis, heart, intestine, gill and fin) from apparently healthy (control), moribund and survived C. mrigala experimentally infected with Aeromonas hydrophila infection were analyzed. Transferrin mRNA was detected only in liver RNA and to lesser extent in brain tissue out of the 10 tissues analyzed irrespective of bacterial infection.     

Efficacy of N2O2 donor schiff bases and their Zn2+ complexes on various morphological and biochemical parameters of Cicer arietinum L.

Schiff-base polydentate ligands types of salen and salophen can form stable complexes with Zn²⁺ and these metal complexes can act as a source of zinc (Zn) to plant's body if they are used as micronutrient supplements. Inspired by these facts, four different Schiff-base ligands and their Zn²⁺ complexes were first synthesized and then characterized by different analytical and spectroscopic techniques. To investigate their effects local chickpea seeds were treated with each ligands and complexes and different morphological and biochemical parameters were monitored. Among all the complexes and ligands it was found that the C4 complex, that is, [N,N'-(o-phenylene)bis-(3-methoxysalicylidenediamine)] monohydrate showed the maximum efficacy when treated as a micronutrient supplement for Cicer arietinum L. So that these complexes especially the C4 can act as an potential source of Zn.     

Modeling of Soil-Plant-Fertilizer Relationships for Optimizing Fertilizer Doses for Different Levels of Finger Millet Yield under Semi-Arid Alfisols

Experiments were conducted to test the superiority of treatment combinations of nitrogen (N; 0, 50, 100, 150, 200 kg ha^?1), phosphorus (0, 30, 60, 90 kg ha^?1) and potassium (0, 30, 60 kg ha^?1) for finger millet during 2005–2007. Application of 200-90-60 kg ha^?1 gave maximum yield of 1666, 1426 and 1640 kg ha^?1 in 3 years, respectively. The yield regression model through soil and fertilizer nutrients gave predictability of 0.98, 0.97 and 0.98, with sustainability yield index (SYI) of 50.4, 49.4 and 52.5 in 2005, 2006 and 2007, respectively. Optimum nitrogen, phosphorus and potassium (NPK) doses for attaining yields of 800 and 1200 kg ha^?1 were derived at soil nitrogen, phosphorus and potassium of 75–400, 10–70 and 150–750 kg ha^?1. Fertilizer nitrogen, phosphorus and potassium ranged from 30–128, 3–19, 13–25 kg ha^?1 and 105–203, 4–32, 27–39 kg ha^?1 for attaining 800 and 1200 kg ha^?1 yield, respectively. The doses could be adopted for attaining sustainable yields under semiarid Alfisols.     

Molecular characterization of <Emphasis Type="Italic">Xiphinema brevicollum</Emphasis> (Nematoda: Longidoridae) from the Czech Republic

Populations of Xiphinema brevicollum occurring in the Czech Republic were described morphologically and molecularly. Published species-specific primer set BL18 and BV3 was used to amplify three populations of X. brevicollum from the Czech Republic. These primers were tested against 9 species of Xiphinema and 11 species of Longidorus. Amplification was also observed for X. inaequale, X. italiae and X. lambertii. Three additional markers, mitochondrial cytochrome c oxidase subunit 1, ribosomal D2/D3 expansion segment of the 28S gene and 18S gene, were amplified and sequenced for X. brevicollum, X. inaequale and X. lambertii belonging to X. americanum-group. Comparison of cox1 sequences of X. brevicollum from the Czech Republic with X. taylori from the Slovak Republic (accession number AM086702) suggested that these populations represent the same species.