Complete genome sequences and properties of Spartina mottle virus isolates from hybrid Bermuda grass (Cynodon dactylon × Cynodon transvaalensis)

Full genome sequences are presented for two isolates of Spartina mottle virus (SpMoV) from two accessions of the hybrid turf grass Cynodon dactylon × C. transvaalensis (Bermuda grass, green couch), originally from the USA but detected during post-entry quarantine in Australia. Both isolates had a genome of 9,346 nucleotides, encoding a single polyprotein of 3,029 amino acids and predicted to be cleaved into 10 mature proteins. Phylogenetic analysis strongly supported placement in a new genus within the family Potyviridae. The isolates possess 715–780 × 11–12 nm flexuous virions and produce cylindrical (pinwheel) inclusions in infected cells. They were mechanically transmitted to several species in the Poaceae including Zea mays (maize, sweet corn), Chloris gayana (Rhodes grass), and Echinochloa colona (awnless barnyard grass).     

Identification of major QTLs associated with stable resistance of tomato cultivar ‘Hawaii 7996’ to Ralstonia solanacearum

Bacterial wilt caused by Ralstonia solanacearum is one of the most devastating diseases of tomato. Tomato cultivar ‘Hawaii 7996’ has been shown to have stable resistance against different strains under different environments. This study aimed to locate quantitative trail loci (QTLs) associated with stable resistance using 188 recombinant inbred lines (RILs) derived from ‘Hawaii 7996’ and ‘West Virginia 700.’ A new linkage map with good genome coverage was developed, mainly using simple sequence repeat markers developed from anchored bacterial artificial chromosome or scaffold sequences of tomato. The population was evaluated against phylotype I and phylotype II strains at seedling stage or in the field in Indonesia, Philippines, Taiwan, Thailand, and Reunion. Two major QTLs were identified to be associated with stable resistance. Bwr-12, located in a 2.8-cM interval of chromosome 12, controlled 17.9–56.1 % of total resistance variation. The main function of Bwr-12 was related to suppression of internal multiplication of the pathogen in the stem. This QTL was not associated with resistance against race 3-phylotype II strain. Bwr-6 on chromosome 6 explained 11.5–22.2 % of the phenotypic variation. Its location differed with phenotype datasets and was distributed along a 15.5-cM region. The RILs with the resistance allele from both Bwr-12 and Bwr-6 had the lowest disease incidence, which was significantly lower than the groups with only Bwr-12 or Bwr-6. Our studies confirmed the polygenic nature of resistance to bacterial wilt in tomato, and that stable resistance in ‘Hawaii 7996’ is mainly associated with Bwr-6 and Bwr-12.     

基于灰色GM(1,N)的生态旅游市场需求预测研究——以越南风雅-格邦国家公园为例

指出了生态旅游市场需求受到众多因素影响,而且各因素之间存在复杂的相关性,因素度量信息不足,所以可以将生态旅游市场需求预测系统视为灰色系统。以风雅-格邦国家公园为分析对象,基于预测模型GM(1,N),分析诸多因素对越南生态旅游市场需求的综合影响,主要考虑各因素之间的相关度基础上选择最合适的因素建立灰色预测模型,从研究结果中可以得到:影响生态旅游市场需求的因素之间,客源地的教育水平最具有相关性,其次是性别,收入以及旅游资源状况等,灰色预测模型的结果表明:2012～2021年越南生态旅游市场需求增长总体呈现上涨趋势,但增幅较为平缓。     

Adapting the innovation systems approach to agricultural development in Vietnam: challenges to the public extension service

Competing models of innovation informing agricultural extension, such as transfer of technology, participatory extension and technology development, and innovation systems have been proposed over the last decades. These approaches are often presented as antagonistic or even mutually exclusive. This article shows how practitioners in a rural innovation system draw on different aspects of all three models, while creating a distinct local practice and discourse. We revisit and deepen the critique of Vietnam’s “model” approach to upland rural development, voiced a decade ago in this journal. Our analysis of interviews with grassroots extension workers and extension managers reveals how they have received government, donor, and academic discourses on participation, user-orientation, and private sector involvement in innovation. Extension workers as well as managers integrate the reform discourses into the still-dominant transfer of technology model. We show how extensionists draw selectively on these diverse discourses to foster interaction with outsiders and clients, and bolster their livelihood strategies. We conclude that the conceptual framework suggested by the innovation systems (IS) approach is broadly appropriate for analyzing the Vietnamese case, but that the IS approach in the contemporary Vietnamese context requires adaptation for taking into account the blurred line between private and state sectors, and recognizing the hegemonic position of state-based networks. Improving extensionists’ ability to mediate between the conflicting principles of farmers’ self-organization and government control is identified as a key challenge for increasing innovative capacity in rural upland Vietnam.     

Assessment of genetic diversity and population structure of Vietnamese indigenous cattle populations by microsatellites

Cattle play a very important role in agriculture and food security in Vietnam. A high level of cattle diversity exists and serves different needs of Vietnamese cattle keepers but has not yet been molecularly characterized. This study evaluates the genetic diversity and structure of Vietnamese indigenous cattle populations, using microsatellite markers. A total of 410 individuals from six indigenous cattle populations and an exotic breed was characterized using 27 microsatellite markers A total of 362 alleles was detected and the number of alleles per locus ranged from 8 (INRA005 and ILSTS005) to 17 (ETH185). The level of gene diversity was high indicated by a mean expected heterozygosity (He) across populations and loci of 0.73. Level of inbreeding (mean F_IS=0.05) and genetic differentiation (mean F_ST=0.04) was moderate. The phylogenetic tree based on Reynolds genetic distance reflected geographic distances. Structure analysis indicated five homogeneous clusters. The Brahman, Lang Son, Ha Giang and U Dau Riu cattle were assigned to independent clusters while Nghe An, Thanh Hoa and Phu Yen cattle were grouped in a single cluster. We conclude that Vietnamese indigenous cattle have high levels of genetic diversity and distinct genetic structures. Based on these results, we recommend that for conservation homogenous populations (Nghe An, Thanh Hoa and Phu Yen) can be grouped to reduce costs and U Dau Riu, Lang Son and Ha Giang populations should be conserved separately to avoid loss of genetic diversity.     

Structure of Fucoidan from Brown Seaweed Turbinaria ornata as Studied by Electrospray Ionization Mass Spectrometry (ESIMS) and Small Angle X-ray Scattering (SAXS) Techniques

The purpose of this study is to elucidate both the chemical and conformational structure of an unfractionated fucoidan extracted from brown seaweed Turbinaria ornata collected at Nha-trang bay, Vietnam. Electrospray ionization mass spectrometry (ESI-MS) was used for determining the chemical structure and small angle X-ray scattering (SAXS) provided conformational of the structure at the molecular level. The results showed that the fucoidan has a sulfate content of 25.6% and is mainly composed of fucose and galactose residues (Fuc:Gal ≈ 3:1). ESIMS analysis suggested that the fucoidan has a backbone of 3-linked α-l-Fucp residues with branches, →4)-Galp(1→ at C-4 of the fucan chain. Sulfate groups are attached mostly at C-2 and sometimes at C-4 of both fucose and galactose residues. A molecular model of the fucoidan was built based on obtained chemical structure and scattering curves estimated from molecular model and observed SAXS measurement were fitted. The results indicated that fucoidan under study has a rod-like bulky chain conformation.     

Identification and development of molecular markers linked to Phytophthora root rot resistance in pepper (Capsicum annuum L.)

Phytopthora root rot in pepper (C. annuum) is caused by Phytophthora capsici L., which exhibits a high level of pathogenic diversity. Resistance to this disease is conditioned by a number of quantitative trait loci. Pyramiding resistance alleles is desirable and could be simplified by the use of molecular markers tightly linked to the resistance genes. The purpose of this study was development of molecular markers linked to Phytophthora root rot resistance. An F₈ recombinant inbred line (RIL) population derived from a cross between YCM334 and a susceptible cultivar ‘Tean’ was used in combination with bulk segregant analysis utilizing RAPD and conversion of AFLP markers linked to Phytophtora root rot resistance into sequence-characterized amplified region (SCAR) markers. In conversion: one marker was successfully converted into a co-dominant SCAR marker SA133_4 linked to the trait. In bulked segregant analysis (BSA): three RAPD primers (UBC484, 504, and 553) produced polymorphisms between DNA pools among 400 primers screened. Genetic linkage analysis showed that the SCAR and RAPD markers were located on chromosome 5 of pepper. Quantitative trait locus (QTL) analysis showed that the SA133_4 and UBC553 were linked to Phytophtora root rot resistance. These markers were correctly identified as resistant or susceptible in nine promising commercial pepper varieties. These markers will be beneficial for marker-assisted selection in pepper breeding.     

Weed flora of water rice in the Red River Delta,Vietnam

The occurrence of weeds in water rice was surveyed in the Red River Delta, Vietnam during spring and summer rice-growing seasons in 1995 and 1996. Sixty different weeds from 19 plant families were recorded. The most important plant families as weeds of rice were Poaceae and Cyperaceae. The most important weed however was Rotala indica (Willd.) Koehne (Lythraceae) followed by Echinochloa crus-galli (L.) Beauv. and Cyperus difformis L. A brief comparison of this rice weed flora and those of Australia and California was made.     

Effects of low temperatures on pupal survival of the stone leek leafminer Liriomyza chinensis (Diptera: Agromyzidae)

Abstract

The cold-hardiness of Liriomyza chinensis pupae was measured in the laboratory by observing pupal mortality at low temperatures. Pupal mortality increased with decreasing temperature and with extended cold exposure time. No recently pupated pupae (6 h) were able to survive after 16 days of chilling at 0, 2.5 and 5°C, but 42.9% survival was observed at 10°C. Pupae at different developmental stages showed significant difference in mortality, with very low levels of mortality observed for older pupae (4 and 7 days) after exposure to 0°C for 16 days. The lethal time for 50% survival (LT₅₀) increased with increasing age of pupae. LT₅₀ for 4-day-old pupae exposed to 0°C was 52.1 days. Analysis of mean temperatures at several localities indicated that L. chinensis is able to overwinter outdoors in southern regions, but is unable to overwinter in open fields in northern regions of Japan, suggesting that overwintering in these regions would only occur in greenhouses.     

猕猴桃黄化病营养诊断与土壤养分相关性的研究

西北地区以石灰性土壤为主,土壤微量元素有效性较低,种植猕猴桃易出现黄化现象.采集正常和黄化猕猴桃叶片及其树冠下土壤样品进行营养诊断分析.结果表明,除Ca外,黄化叶片中N、P、K、Cu、Fe含量均较低,与正常叶片含量相比差异达极显著,其中Cu和Fe分别为正常叶片的66.85％与65.61％.铁是叶绿素合成的必需元素,表明黄化原因与缺铁有关.正常和黄化树体下土层各养分测定值差异不显著;说明植株叶片养分缺乏是植株根系吸收养分受阻,与土壤养分丰缺无关.需要通过改善土壤的其他条件(如pH,水分,通气状况等)或叶面喷肥来促进树体吸收.