Frequent use of colistin-based drug treatment to eliminate extended-spectrum beta-lactamase-producing <Emphasis Type="Italic">Escherichia coli</Emphasis> in backyard chicken farms in Thai Binh Province,Vietnam

Reports of livestock infections with extended-spectrum beta-lactamase-producing Escherichia coli (ESBL-E) are increasing. Based on interviews conducted over a 6-month period, we found that veterinarians in the Vietnamese province of Thai Binh prefer to prescribe colistin-based drugs (CBD) in chicken farms. We aimed to clarify whether CBD use selects for strains of colistin-resistant ESBL-E. With the cooperation of seven local households, we detected ESBL-E in chickens’ feces after treating chickens with CBD. Phylogenetic groupings and the presence of CTX-M/AmpC genes were determined, and the multi-antibiotic susceptibility of isolates was analyzed. Our results showed that ESBL-E presented in seven chickens’ feces from two households. Seventy-two percent of ESBL-E isolates harbored CTX-M9 and the phylogenetic group A; the colistin minimum inhibitory concentration (MIC) of all isolated ESBL-E ranged from 0.064 to 1 μg mL^?1. Moreover, ESBL-E isolates were used to experimentally select for colistin resistance, and the effect of commercial CBD on ESBL-E was investigated. The results showed that an ESBL-E strain with a colistin MIC of 4 μg mL^?1 was able to grow in media with CBD. Although CBD treatment was effective, in vitro experiments demonstrated that ESBL-E can easily acquire colistin resistance. Therefore, restrictions on colistin use are necessary to prevent the emergence of colistin-resistant bacteria.     

The effect of simulated rat damage on irrigated rice yield and compensation

A field experiment was conducted to investigate the impact of simulated rat damage on grain yield in irrigated lowland rice in An Giang province, in the Mekong Delta of Vietnam. Rat damage was simulated by making a 45° cut at the base of the rice tillers about 3–5 cm above the soil surface. 0% (control), 5%, 10%, 25% and 50% of the tillers were removed at the tillering (25 days after sowing, DAS), panicle initiation (43 DAS), flowering (72 DAS) and ripening (87 DAS) stages. The total number of mature tillers, immature tillers and percent filled grains, the weight of 1000 grains and grain yields were recorded. The rice crop completely compensated by increased tillering and yield for tillers damaged up to 50% at the tillering stage. However, the damage and yield loss were highly variable. The ability of the rice crop to compensate at later stages progressively reduced. The implications for managing rat damage to rice crops are (1) rodent control activities should be applied before 10% of tillers are damaged at the tillering stage, and (2) a well balanced nitrogen supply during the tillering stage could potentially assist the rice plants to better compensate for rat damage.     

Relationship of wood composition to growth traits of selected open-pollinated families of <Emphasis Type="Italic">Eucalyptus urophylla</Emphasis> from a progeny trial in Vietnam

Lignin and cellulose contents and wood basic density were related to diameter at breast height (DBH) in six fast-growing and five slow-growing families from a combined progeny test and seedling seed orchard of Eucalyptus urophylla grown for 10 years in northern Vietnam. The mean cellulose content of the fast-growing families was significantly higher than that of the slow growing-families (40.0 and 37.1%, respectively), and for individual trees cellulose content was significantly correlated phenotypically with DBH. Wood basic density was significantly lower in the fast-growing group than in the slow-growing group (0.506 and 0.535 g cm⁻³, respectively), and was significantly negatively correlated phenotypically with DBH. The lignin contents were not significantly different between groups. Cellulose content and wood basic density were not correlated. The main conclusion is that there is no obstacle to combining high growth rate with high cellulose content, for plantation of forests intended mainly for pulpwood.     

Economic feasibility of recirculating aquaculture systems in pangasius farming

This study aims to analyze the economic feasibility of recirculating aquaculture systems (RAS) in pangasius farming in Vietnam. The study uses a capital budgeting approach and accounts for uncertainty in key parameters. Stochastic simulation is used to simulate the economic performance of medium and large farms operating with a traditional system or RAS. Data are obtained through structured surveys and a workshop in the Mekong River Delta. Results show that for large farms, net present value increases from an average of 589,000 USD/ha to 916,000 USD/ha after implementing RAS. Overall, the probability that RAS is a profitable investment is found to be 99% for both farm sizes. With RAS, the crucial parameters determining profitability are price, yield, costs of fingerling, feed, and initial investment. Findings on the robustness of the economic performance of RAS are useful to support public and private decision making towards increasing the sustainability of pangasius production.     

Development of a co-dominant SCAR marker linked to the Ph-3 gene for Phytophthora infestans resistance in tomato (Solanum lycopersicum)

Random amplified polymorphism DNA (RAPD) and bulk segregant analysis (BSA) approaches were used to characterize the molecular marker linked to the Phytophthora infestans resistance gene Ph-3 in tomato. A total of 800 RAPD primers were screened. One RAPD marker UBC#602 was identified to be tightly linked to the Ph-3 gene. The marker was successfully converted into a co-dominant sequence characterized amplified region (SCAR) marker. The SCAR marker SCU602 was used to analyze 96 F₂ progenies and fitted the expected 1:2:1 Mendelian segregation ratio. Forty one tomato inbred lines were screened using the SCAR marker in comparison with a reference marker linked to the Ph-3 gene and both markers gave the same results. SCU602 was further validated for association to resistance and its potential in MAS in 72 tomato lines and cultivars. The marker identified three genotypes harbouring the resistance allele. This SCAR marker can be used in breeding programs for the selection of the Ph-3 gene for Phytophthora infestans resistance.     

Target region sequencing and applications in plants

Journal of Crop Science and Biotechnology - Fine mapping quantitative trait loci (QTL) and understanding the molecular mechanism and underlying functions of genes are vital to the advancement of...     

Does the influence of earthworms on water infiltration, nitrogen leaching and soil respiration depend on the initial soil bulk density? A mesocosm experiment with the endogeic species Metaphire posthuma

Soil compaction has a negative impact on both earthworm abundance and diversity. Recent studies, however, suggest that earthworm cast properties are not influenced by the initial soil bulk density. With time, earthworms could therefore transform soils with different bulk densities into a soil with the same physical state and thus with a similar ecological functioning. This study aimed to test this hypothesis in two laboratory incubation experiments. First, we measured the influence of soil bulk density (1.1 or 1.4?g?cm^?3) on the production of cast by the endogeic earthworm species Metaphire posthuma. In a second experiment, we investigated the effect of M. posthuma on water infiltration, NH ₄ ⁺ , and NO ₃ ^? leaching and soil respiration at the same two soil bulk densities. Although initially higher, earthworm casting activity in soil at 1.4?g?cm^?3 decreased until it reached the same level of activity as earthworms in soil at 1.1?g?cm^?3. This behavioral plasticity led to a transformation of compacted and loose soils, with their own functioning, to a third and similar state with similar hydraulic conductivity, nitrogen leaching, and soil respiration. The consequences for soil organization and soil functioning are discussed.     

Different crop rotation systems as drivers of change in soil bacterial community structure and yield of rice, <Emphasis Type="Italic">Oryza sativa</Emphasis>

Intensive cropping, especially of rice, is considered to contribute to negative effects not only on soil chemical and biological properties but also on long-term grain yield. Appropriate crop rotation is often practiced as an alternative strategy to overcome the negative side effects of intensive cropping. Although soil microbial diversity and community structure have been shown to respond differently to altered agricultural management practices, little is known about possible links between crop rotation and grain yield on bacterial communities in rice paddy soil. In this study, we investigated the impact of specific rotational crops and compared it with intensive rice cultivation. The main crop rice (Oryza sativa) was rotated with maize (Zea mays) and mungbean (Phaseolus aureus) in different combinations in a system cultivating three crops per year. Soil bacterial communities were studied in two different cropping periods using pyrosequencing of the variable V4 region of the 16S rRNA. Our results showed that rotation with alternative crops increased rice yield by 24–46% depending on rotation structure and that bacterial community structure was altered in the presence of mungbean and/or maize compared to that in rice monoculture. In the crop rotation systems, composition, abundance, and diversity of soil bacterial communities were significantly different and higher than those in rice monoculture. Our results show that effects of crop rotation relate to changes in soil bacterial community structure suggesting that appropriate crop rotations provide a feasible practice to maintain the equilibrium in soil microbial environment for sustainable rice cultivation.     

竹集成材高频热压过程中板坯内温度的变化趋势

以毛竹Phyllostachys edulis集成材为研究对象,在不同条件下进行高频热压,通过对竹集成材板坯高频热压过程中芯层温度变化的统计分析,得到了竹集成材高频热压过程中板坯温度的变化规律。结果表明:在试验条件范围内,随着板坯含水率从6%增加到18%,涂胶量从200 g·m-2增加到300 g·m-2,板坯的温度明显升高。升温过程可以分为快速升温和慢速升温2个阶段。在快速升温阶段板坯内的温度随板坯初含水率、涂胶量及加热时间的提高而递增;在慢速升温阶段板坯初含水率及涂胶量对板坯内的温度的影响很小,板坯芯层升温速度随加热时间的增加而减少。通过试验数据分析,得出较优的高频热压胶合工艺条件为:涂胶量300 g·m-2,竹条含水率12%,高频热压时间7 min。     

Improved solvent extraction procedure and high-performance liquid chromatography-evaporative light-scattering detector method for analysis of polar lipids from dairy materials

A normal-phase high-performance liquid chromatography-evaporative light-scattering detector method employing dichloromethane, methanol, and acetic acid/triethylamine buffer as the mobile phase was developed for analysis of polar lipids (PLs). This method was applicable for analysis of PLs from both dairy materials and soy lecithin. All of the PLs of interest such as glycolipids, phospholipids, and sphingomyelin were well separated with a total run time of 22.5 min and without necessitating the removal of neutral lipids beforehand. Peak retention times were stable, and the method was reproducible. In this study, a modified method of using solvents for extraction of PLs from dairy matrices was also investigated. The modified method offered higher extraction efficiency, consumed less time, and in some cases saved solvent use.