Influence of single-nucleotide polymorphisms in the gene encoding granule-bound starch synthase I on amylose content in Vietnamese rice cultivars

Amylose content is one of the most important factors influencing the physical and chemical properties of starch in rice. Analysis of 352 Vietnamese rice cultivars revealed a wide range of variation in apparent amylose content and the expression level of granule-bound starch synthase. On the basis of single-nucleotide polymorphisms (SNP) at the splicing donor site of the first intron and in the coding region of the granule-bound starch synthase I gene, Waxy gene, alleles can be classified into seven groups that reflect differences in apparent amylose content. The very low and low apparent amylose content levels were tightly associated with a G to T in the first intron whereas intermediate and high amylose was associated with a T genotype at SNP in exon 10. The correlation between the combination of T genotype at SNP in the first intron, C in exon 6, or C in exon 10 was predominant among low amylose rice varieties. Our analysis confirmed the existence of Wx^op allele in Vietnamese rice germplasm. The results of this study suggest that the low amylose properties of Vietnamese local rice germplasm are attributable to spontaneous mutations at exons, and not at the splicing donor site.     

基于SRTM_DEM的泾河流域特征信息提取研究

流域特征信息的提取对于水文地理信息分析、模拟技术和水文模型建立具有重要意义。基于STRM_DEM数据,在ArcGIS9．3环境下,提取泾河流域坡度、坡向等地形特征,以及河网、流域边界和面积等水文要素,并划分子流域。分析表明,当闽值取5000（40．5km^2）时,生成的流域河网能够较好地反映该地区水系。根据河网分级、低级集水区域生成结果和流域地形特征,可划分为32个子流域,为流域分布式水文模型的构建提供了基础地理信息。SRTM_DEM提取泾河和部分支流流域面积误差均较小,说明提取结果与实际非常接近。结果表明,SRTM_DEM数据和ArcGIS9．3提取流域特征信息方便快捷,具有较高的精度和准确性,应用前景广阔。     

Short-term carbon and nitrogen dynamics in soil,litterfall and canopy of a suburban native forest subjected to prescribed burning in subtropical Australia

Purpose

This study aimed to understand the mechanisms of the variations in carbon (C) and nitrogen (N) pools and examine the possibility of differentiating the burning effects from seasonal and pre-existed N limitations in a native suburban forest ecosystem influenced by prescribed burning in subtropical Australia.

Materials and methods

Soil and litterfall samples were collected from two study sites from 1 to 23 months since last burnt. Soil labile C and N pools, soil C and N isotopic compositions (δ¹³C and δ¹⁵N), litterfall mass production (LM), and litterfall total C, total N, δ¹³C and δ¹⁵N were analysed. In-situ gas exchange measurements were also conducted during dry and wet seasons for Eucalyptus baileyana and E. planchoniana.

Results and discussion

The results indicated that labile C and N pools increased within the first few months after burning, with no correlations with climatic factors. Therefore, it was possible that the increase was due to the burning-induced factors such as the incorporation of ashes into the soil. The highest values of soil and litterfall δ¹⁵N, observed when the study was commenced at the experimental sites, and their high correlations with climatic factors were indicative of long-term N and water limitation. The ¹³C signals showed that soil N concentrations and climatic factors were also two of the main factors controlling litterfall and foliage properties mainly through the changes in photosynthetic capacity and stomatal conductance.

Conclusions

Long-term soil N availabilities and climatic factors were the two of the main driving factors of C and N cycling in the studied forest sites. Further studies are needed to compare soil and litterfall properties before and after burning to profoundly understand the effects of prescribed burning on soil labile C and N variations.

     

Does the influence of earthworms on water infiltration, nitrogen leaching and soil respiration depend on the initial soil bulk density? A mesocosm experiment with the endogeic species Metaphire posthuma

Soil compaction has a negative impact on both earthworm abundance and diversity. Recent studies, however, suggest that earthworm cast properties are not influenced by the initial soil bulk density. With time, earthworms could therefore transform soils with different bulk densities into a soil with the same physical state and thus with a similar ecological functioning. This study aimed to test this hypothesis in two laboratory incubation experiments. First, we measured the influence of soil bulk density (1.1 or 1.4?g?cm^?3) on the production of cast by the endogeic earthworm species Metaphire posthuma. In a second experiment, we investigated the effect of M. posthuma on water infiltration, NH ₄ ⁺ , and NO ₃ ^? leaching and soil respiration at the same two soil bulk densities. Although initially higher, earthworm casting activity in soil at 1.4?g?cm^?3 decreased until it reached the same level of activity as earthworms in soil at 1.1?g?cm^?3. This behavioral plasticity led to a transformation of compacted and loose soils, with their own functioning, to a third and similar state with similar hydraulic conductivity, nitrogen leaching, and soil respiration. The consequences for soil organization and soil functioning are discussed.     

Influence of phosphate sorption on dispersion of a Ferralsol

Abstract

Soil dispersion induces soil erosion and colloidal leaching. Nutrients are lost at the same time and this causes water contamination. Phosphate is an essential element for living organisms. Because phosphate influences soil dispersion and it is an important limited resource, this influence must be evaluated well in order to diminish negative effects on soil structure. In this paper, we firstly evaluated the influence of phosphate sorption on soil dispersion by calculating repulsive potential energy between soil particles. Ferralsol, which is a typical soil in rainy tropical regions, was used as the material. The dispersion-flocculation phenomena were investigated with absorbance of soil suspension under different pH, phosphate adsorption and electrolyte concentration in an Na-NO₃-PO₄ system. The repulsive potential energy was calculated based on the diffuse double layer theory and the measured zeta potential. We indicated that the measured absorbance increased with the increase of the repulsive potential energy. The repulsive potential energy increased with increasing phosphate sorption up to about 5 to 20 mmol kg^?1 at all pH, and it induced the soil dispersion, because phosphate sorption increased the negative charge of the soil. After its peak, it decreased with increasing phosphate sorption because the electrolyte concentration increased and the electrolyte screened the electric field near the soil surface. The repulsive potential energy also increased with increasing pH because of the increase of the negative charge of the soil. Even at low pH, after a certain amount of phosphate sorption, the soil dispersed due to the increase of repulsive potential energy, although the soil flocculated before phosphate application. Because the soil dispersion causes soil and phosphorus loss, the influence of soil pH and phosphate sorption on the soil dispersion should be considered for good soil management.     

A global meta-analysis shows soil nitrogen pool increases after revegetation of riparian zones

Purpose

Sustainable management of riparian zone soils is required to ensure the health of natural ecosystems and maintenance of soil nitrogen (N) pools and soil N cycling. However, the effect of revegetation type and age on soil N pools remains poorly understood.

Materials and methods

This study compiled data from published articles to understand the effects of revegetation types and age on soil total N (TN) and soil inorganic N (NH₄⁺-N, and NO₃^?-N) using a meta-analysis. We extracted 645 observations from 52 published scientific articles.

Results and discussion

The revegetation of riparian zones led to a significant increase of soil TN (mean effect size: 11.5%; 95% CI: 3.1% and 20.6%). Woodland increased soil TN significantly by 14.0%, which was associated with the presence of N fixing species and high litter inputs. Soil NH₄⁺-N concentration significantly increased (mean effect size: 20.1%; 95% CI: 15.1% and 25.4%), whereas a significant decrease in soil NO₃^?-N (mean effect size: ? 21.5%; 95% CI: ? 15.0% and ? 27.5%) was observed. Of the revegetation types considered in this paper, NO₃^?-N concentration in soil followed the order: grassland < shrubland < woodland, suggesting that woodland might be more efficient in soil NO₃^?-N retention than grassland. The high plant N uptake and accelerated NO₃^?-N leaching in grassland could be related to the decreased soil NO₃^?-N in grassland compared with other revegetation types. Revegetation significantly decreased soil moisture by (mean effect size: ? 7.9%; 95% CI: ? 3.3% and ? 12.2%) compared with the control, which might be associated with the selection of exotic species as dominant vegetation in the riparian zone. Soil TN increased in revegetation ages between 10 and 40 years following revegetation and was related to increased soil organic carbon inputs within those ages following the establishment.

Conclusions

This study provides insight into influence of different vegetation types and age on soil N pools and soil moisture. This study also highlights the importance of revegetation in riparian zones to increase soil TN.

     

Is N‐feedback involved in the regulation of nitrogenase activity in Medicago truncatula?

To determine whether senescing leaves provoke an active nitrogen (N) remobilization that results in the reduction of nitrogenase activity, 60% of Medicago truncatula lower leaves were either darkened or individually excised for two weeks. Although a considerable amount of N was remobilized, N₂ fixation activity was found to be increased to maintain the N source/sink balance, indicating an absence of the negative N‐feedback regulation of nitrogenase activity in the senescing M. truncatula.     

Variable-timing,fixed-rate application of cattle biogas effluent to rice using a leaf color chart: microcosm experiments in Vietnam

ABSTRACT

Livestock production plays a leading role in agricultural land-use change. Producing biogas from livestock waste and subsequently using the biogas effluent as fertilizer for crops is a promising option to solve environmental problems resulting from expanding livestock production. However, it is difficult to promptly and accurately measure the nitrogen (N) concentration of effluent for farmers in developing countries, making precise N management difficult. The objectives of the current study were (1) to evaluate the feasibility of variable-timing, fixed-rate application of cattle biogas effluent using a leaf color chart (LCC) for rice (Oryza sativa L.) and (2) to determine the optimum LCC threshold for grain yield. We conducted two microcosm experiments in the Mekong Delta of Vietnam in 2018 using eight treatments of N-fertilizer application. In the Zero treatment, we applied no N. In the Estd treatment, we split-applied N as effluent (E) at fixed rate and timing as the standard method. In E2.75, E3.00, E3.25, E3.50, and E3.75, we applied effluent whenever the LCC value went below 2.75, 3.00, 3.25, 3.50, and 3.75, respectively. In U3.25, we applied N as urea (U) whenever the LCC value fell below 3.25. The total effluent-N application rate ranged from 90 to 210 kg N ha^?1 season^?1. Rice growth was normal but there was a substantial yield gap between the two microcosm experiments due to the seasonal difference in solar radiation. Rice yield tended to increase with increasing LCC threshold. There was a positive linear relationship between LCC and chlorophyll content (SPAD) values (R ² = 0.73–0.79). Grain yield was well explained (R ² = 0.70–0.89) by the seasonal mean LCC or SPAD value. Plant total N uptake increased with increasing LCC threshold, but the three calculated indices of N use efficiency (NUE) – apparent N recovery, agronomic NUE, and internal NUE – were not always improved with a higher LCC threshold. Our results showed that the tested variable-timing, fixed-rate strategy for the application of cattle biogas effluent was feasible and the optimum LCC threshold for grain production was 3.75 under the current microcosm conditions.     

The Contribution of Various Components to pH Buffering Capacity of Acrisols in Southeastern Vietnam

This paper examined the contribution of various soil components to pH buffering capacity (pH_BC) of haplic Acrisols in an upland area of Southeastern Vietnam. Sampling was conducted in 2016 in Tan Bien district, Tay Ninh province at seven sites from the surface to 60-cm depth. Soils were very acidic (pH_H2O 4.53 ± 0.05). The pH_BC were very low, 0.46 ± 0.04 and 0.44 ± 0.05 cmol H⁺ kg^?1 pH^?1, respectively, for original samples and those from which soil organic carbon (SOC, 0.52 ± 0.09%) were removed. The contribution of Al³⁺ to pH_BC was remarkable while that of SOC was of little significance. The contribution of clay minerals to pH_BC was unclear due to the low (9.37 ± 0.76%) and kaolinite-dominated clay content. The current soil conditions indicated a potential for further soil acidification. Liming would be one of the measures to remediate soil acidity in the research area.