The spawning cycle,fry appearance and mass collection techniques for fry of Siganus rivulatus in the Red Sea

Data on the G.S.I. of adults and appearance of fry indicated a regular lunar spawning cycle of S. rivulatus within a seasonal breeding period. A mass collection technique yielding 5000–7000 fry per day was developed.     

Machine learning highlights the importance of primary and secondary production in determining habitat for marine fish and macroinvertebrates

1. Species distribution models for marine organisms are increasingly used for a range of applications, including spatial planning, conservation, and fisheries management. These models have been constructed using a variety of mathematical forms and drawing on both physical and biological independent variables; however, what might be called first-generation models have mainly followed the form of linear models, or smoothing splines, informed by data collected in the context of fish surveys.
2. The performance of different classes of variables were tested in a series of species occurrence models built with machine learning methods, specifically evaluating the potential contribution of lower trophic level data. Random forest models were fitted based on the classification of the absence/presence for fish and macroinvertebrates surveyed on the US Northeast Continental Shelf.
3. The potential variables included physical, primary production, secondary production, and terrain variables. For accepted model fits, six variable importance measures were computed, which collectively showed that physical and secondary production variables make the greatest contribution across all models. In contrast, terrain variables made the least contribution to these models.
4. Multivariable analyses that account for all performance measures reinforce the role of water depth and temperature in defining species presence and absence; however, chlorophyll concentration and some specific zooplankton taxa, such as Metridia lucens and Paracalanus parvus, also make important contributions with strong seasonal variations.
5. Our results suggest that lower trophic level variables, if available, are valuable in the creation of species distribution models for marine organisms.

     

Evaluating changes in switchgrass physiology,biomass, and light-use efficiency under artificial shade to estimate yields if intercropped with Pinus taeda L.

There is growing interest in using switchgrass (Panicum virgatum L.) as a biofuel intercrop in forestry systems. However, there are limited data on the longevity of intercropped bioenergy crops, particularly with respect to light availability as the overstory tree canopy matures. Therefore, we conducted a greenhouse study to determine the effects of shading on switchgrass growth. Four treatments, each with different photosynthetically active radiation (PAR) levels, were investigated inside the greenhouse: control (no shade cloth, 49 % of full sunlight), low (under 36 % shade cloth), medium (under 52 % shade cloth), and heavy shade (under 78 % shade cloth). We determined the effect of shading from March to October 2011 on individually potted, multi-tillered switchgrass transplants cut to a stubble height of 10 cm. In the greenhouse, there was a reduction in tiller number, tiller height, gas exchange rates (photosynthesis and stomatal conductance), leaf area, above- and belowground biomass and light-use efficiency with increasing shade. Total (above- and belowground) biomass in the control measured 374 ± 22 compared to 9 ± 2 g pot^?1 under heavy shade (11 % of full sunlight). Corresponding light-use efficiencies were 3.7 ± 0.2 and 1.4 ± 0.2 g MJ^?1, respectively. We also compared PAR levels and associated aboveground switchgrass biomass from inside the greenhouse to PAR levels in the inter-row regions of a range of loblolly pine (Pinus taeda L.) stands from across the southeastern United States (U.S.) to estimate when light may limit the growth of intercropped species under field conditions. Results from the light environment of loblolly pine plantations in the field suggest that switchgrass biomass will be significantly reduced at a loblolly pine leaf area index between 1.95 and 2.25, which occurs on average between ages 6 and 8 years across the U.S. Southeast in intensively managed pine plantations. These leaf area indices correspond to a 60–65 % reduction in PAR from open sky.     

Stocking density and artificial habitat influence stock structure and yield from intensive nursery systems for mud crabs Scylla serrata (Forsskål 1775)

Intensive nursery systems are designed to culture mud crab postlarvae through a critical phase in preparation for stocking into growout systems. This study investigated the influence of stocking density and provision of artificial habitat on the yield of a cage culture system. For each of three batches of postlarvae, survival, growth and claw loss were assessed after each of three nursery phases ending at crab instars C1/C2, C4/C5 and C7/C8. Survival through the first phase was highly variable among batches with a maximum survival of 80% from megalops to a mean crab instar of 1.5. Stocking density between 625 and 2300 m⁻² did not influence survival or growth in this first phase. Stocking densities tested in phases 2 and 3 were 62.5, 125 and 250 m⁻². At the end of phases 2 and 3, there were five instar stages present, representing a more than 20‐fold size disparity within the populations. Survival became increasingly density‐sensitive following the first phase, with higher densities resulting in significantly lower survival (phase 2: 63% vs. 79%; phase 3: 57% vs. 64%). The addition of artificial habitat in the form of pleated netting significantly improved survival at all densities. The mean instar attained by the end of phase 2 was significantly larger at a lower stocking density and without artificial habitat. No significant effect of density or habitat on harvest size was detected in phase 3. The highest incidence of claw loss was 36% but was reduced by lowering stocking densities and addition of habitat. For intensive commercial production, yield can be significantly increased by addition of a simple net structure but rapidly decreases the longer crablets remain in the nursery.     

Hydromorphological rehabilitation improves channel morphology,instream biotopes,and macroinvertebrate communities,and thus enhances the conservation of an urban river

1. Many river rehabilitation projects have been criticized for failing to meet their goals or for being insufficiently monitored. There is, therefore, an urgent need to develop robust approaches for assessing treatment efficacy and thus guide the increasing investment in rehabilitation.
2. Instream biotopes (formerly called ‘functional habitats’ or ‘mesohabitats’ by different authors) and their macroinvertebrate assemblages were used to assess the effectiveness of entire-channel hydromorphological rehabilitation of a 1.8-km stretch of a lowland stream through the town of Market Harborough, Leicestershire, UK.
3. The project successfully enhanced the physical diversity, measured in the rehabilitated reach as the coefficients of variability for channel water depth and width, wet surface area, number of instream biotopes, and biotope diversity.
4. The project also enhanced the biodiversity conservation value, measured as macroinvertebrate total density, total biomass, richness, diversity, Ephemeroptera, Plecoptera, and Trichoptera (EPT) richness, EPT diversity, EPT count%, and EPT biomass%, all of which significantly increased following rehabilitation. Chironomidae count% and biomass% significantly decreased following rehabilitation. Rehabilitation was also successful in significantly increasing macroinvertebrate shredder, scraper, and filter-feeder group density.
5. Changes in the macroinvertebrate community metrics in the rehabilitated reach were related significantly to changes in the percentages of cover of instream biotopes and increases in biotope diversity in the rehabilitated reach.
6. Macroinvertebrate structural and functional metrics can provide quantitative data for assessing reach-level rehabilitation outcomes, if samples are collected in a pre-defined sampling protocol stratified at the instream biotope level.
7. The practical implications of this work are that the design of rehabilitation projects, if based upon the recreation of biotope heterogeneity, will succeed in improving biological value and restoring the area to near naturalness if a suitable upstream source of macroinvertebrates for natural recolonization is available. The study shows that the concept of biotopes has an important role to play in river conservation management.

     

Long-term catch trends and risk assessment of the Critically Endangered white-spotted wedgefish (Rhynchobatus djiddensis) from South Africa

1. The white-spotted wedgefish (Rhynchobatus djiddensis) is a Critically Endangered shark-like ray in the family Rhinidae. Throughout its Western Indian Ocean distribution, it is targeted for its valuable meat and fins and is reported to have undergone major population declines. However, there remains a need for species specific time-series data to accurately assess localized population declines.
2. This study used two independent long-term (37 and 40 years) time-series catch data from competitive shore angling and shark nets to investigate the size composition and catch per unit effort (CPUE) and conduct a risk assessment for the population on the east coast of South Africa.
3. From 1977 to 2017 the competitive shore fishery captured 7,703 individual R. djiddensis, whilst shark nets in the same region captured 2,856 individuals from 1981 to 2017. Individuals captured in the nets had a sex ratio of 1.8:1 females to males, and were larger than those caught by the anglers. Although the mean annual sizes of net-caught individuals were above the size of reported sexual maturity, there was little evidence to suggest that any individuals captured were reproductively active.
4. Both the competitive shore fishery and shark net catches exhibited strong seasonal trends with the majority of R. djiddensis catches occurring from October to May peaking in austral summer. Standardized CPUE from the competitive shore fishery declined substantially between 1977 and 2017 and shark net catches exhibited a significant (p < 0.05) fourfold decline in annual nominal CPUE from 1981 to 2017.
5. Ultimately, a risk assessment showed a 65.1% decline in abundance over a period of three generation lengths, which indicates that the sampled population of R. djiddensis in South Africa should be classified as Endangered according to the IUCN Red List using criterion A2b. The conservation implications of this are discussed.

     

Changes in amino acid levels in bacteria adhering to rumen epithelium in sheep after oral administration of very low doses of mercury

The effect of low concentrations of mercury taken in the diet (4 mg per a head and day) on the amino acid composition in the proteins of rumen bacteria adhering to the dorsal and ventral parts of the rumen was studied in six sheep. Though the mercury did not influence the amino acid concentration in hydrolyzates of epimural bacteria, low-mercury doses caused significant changes of some amino acids, as compared with the control group of animals. The levels of alanine, histidine, threonine, serine and glycine were significantly decreased and at the same time the levels of proline, valine, isoleucine, tyrosine, lysine and phenylalanine were significantly increased. It was stated in our experiment that the levels of histidine, alanine and threonine in hydrolyzates of epimural bacteria of the rumen were significantly decreased both in the sheep given the balanced feed ration with additions of mercury and nitrogen (according to the standard) and in the sheep given a low-nitrogen diet. Similarly, the levels of proline, tyrosine and phenylalanine in the hydrolizates of epimural bacteria in rumen were significantly increased both with the low-nitrogen diet and in the normal -nitrogen diet with mercury supplement. The results suggest that unexplained disorders frequently occurring in the microbial synthesis in the rumen might be caused by long-continued administration of feed contaminated with extremely low concentrations of heavy metals. The problem deserves detailed investigation in future studies, oriented to explaining the biosynthesis disorders in rumen, reducing the production ability of ruminants.     

Selection for cold chipping genotypes from three early generations in a potato breeding program

Chipping potatoes are an important market for the processing industry. Of the traits influencing chip quality,chip color is market limiting since other traits have diminished value without light chip color. Cold (4 ^°C) storage can reduce storage losses and cultivars producing light colored chips directly from cold storage are needed for this reason. Selection for cold chipping cultivars is traditionally practiced by visual evaluation of progeny the first few years in the field, followed by selection for cold chipping in years 4–5. Early generation selection for cold chipping may reduce cultivar development time by identifying good chipping progeny, families and parents earlier in the breeding cycle. Progeny from 175 4x × 4x families were evaluated from three early generations. They were greenhouse grown tubers (GGT) evaluated after6 mo. storage using randomly selected progeny, and field grown single hills propagated from either seedling transplants (FTR), or from greenhouse grown tubers (FGT). Progeny from field grown generations were selected first by visual evaluation, and then by random selection and chipped after6 mo. (visual selections) or 3 and 6 mo. storage (random selections). Cold chipping progenies were found in all three early generations. The earliest generations for selection are GGT or FTR, but may be less efficient than FGT. Correlations suggest that reliable parent and family selection is possible using GGT data. Visual selection eliminated 4/5 of the good chipping progeny, while identifying 8 of 11,714 genotypes combining visual merit and cold chipping potential. Increased genetic variation and sexual polyploidization are possible strategies for increasing the number of desirable genotypes. This revised version was published online in August 2006 with corrections to the Cover Date.