Genome Mining for Antimicrobial Compounds in Wild Marine Animals-Associated Enterococci

New ecosystems are being actively mined for new bioactive compounds. Because of the large amount of unexplored biodiversity, bacteria from marine environments are especially promising. Further, host-associated microbes are of special interest because of their low toxicity and compatibility with host health. Here, we identified and characterized biosynthetic gene clusters encoding antimicrobial compounds in host-associated enterococci recovered from fecal samples of wild marine animals remote from human-affected ecosystems. Putative biosynthetic gene clusters in the genomes of 22 Enterococcus strains of marine origin were predicted using antiSMASH5 and Bagel4 bioinformatic software. At least one gene cluster encoding a putative bioactive compound precursor was identified in each genome. Collectively, 73 putative antimicrobial compounds were identified, including 61 bacteriocins (83.56%), 10 terpenes (13.70%), and 2 (2.74%) related to putative nonribosomal peptides (NRPs). Two of the species studied, Enterococcus avium and Enterococcus mundtti, are rare causes of human disease and were found to lack any known pathogenic determinants but yet possessed bacteriocin biosynthetic genes, suggesting possible additional utility as probiotics. Wild marine animal-associated enterococci from human-remote ecosystems provide a potentially rich source for new antimicrobial compounds of therapeutic and industrial value and potential probiotic application.     

Transfer of radiocesium from hydroponic medium to potherb mustard and tomato plants

Abstract

Potherb mustard (Brassica rapa var. nipposinica) and tomato plants (scion, ‘CF Momotaro haruka’; rootstock, ‘Dokutar K’; Solanum lycopersicum) were cultured in hydroponic medium containing cesium-137 (¹³⁷Cs) at three different concentrations (0.03, 0.13 and 1.03 Bq L^?1), and uptake of ¹³⁷C into the plants was determined. When the ¹³⁷Cs radioactivity concentration in the medium was 1.03 Bq L^?1, the ¹³⁷Cs radioactivity concentrations in the edible portions of the plants were 4.80 Bq kg^?1 fresh weight for the potherb mustard plants and 3.60 Bq kg^?1 fresh weight for the tomato plants. In both species, the ¹³⁷Cs radioactivity concentration in the edible portions decreased with decreasing ¹³⁷Cs radioactivity concentration in the culture medium. When the ¹³⁷Cs radioactivity concentration in the medium was 0.03 Bq L^?1, a concentration observed in many streams and in tap water in Fukushima Prefecture after the accident at the Fukushima Daiichi Nuclear Power Plant, the ¹³⁷Cs radioactivity concentrations in the edible portions of the plants were 0.50 and 0.15 Bq kg^?1 fresh weight for potherb mustard and tomato plants, respectively. These values are less than the Japanese allowable limit for radiocesium in food. For both species, the transfer factors for ¹³⁷Cs uptake from the culture media to the edible portions and the average transfer rates over the cultivation period were calculated.     

Abstracts of nippon Dozyohiryogaku Zasshi

Aluminum toxicity and boron deficiency are the major factors that limit plant growth and development in acid soils and in B-deficient soils. Root growth inhibition is an early symptom of AI toxicity and B deficiency. Effects of AI and B supply and their interaction on the growth of wheat (Triticum aestivum L.) seedlings were investigated using hydroponics. Fifteen wheat cultivars commonly grown in Bangladesh were used and found to differ considerably in their tolerance to AI toxicity and B deficiency. The relative root length of all the wheat cultivars at 50 µM AI (pH 4.5) ranged from 27 to 71% relative to the control (0 µM AI). Among the cultivars, Inia66 and Kalyansona were found to be the most Al-tolerant and sensitive cultivars, respectively, based on the data of relative root length, malate exudation and AI content of roots. Malate was detected in all the cultivars in the presence of 100 µM AI (pH 4.3). Inia66 exuded a 6-fold larger amount of malate and the AI content of roots was 4 times lower than that in Kalyansona. The vigorous seedling growth was observed at 40 µM B among the series of B treatments. Considerable cultivar differences in response to 40 µM B were observed among the 15 cultivars. Kalyansona was considered to be the most sensitive and Kheri the most tolerant to B deficiency. The interaction effects of B ( 40 and 200 µM) and AI (50 µM) on seedling growth were also examined in Inia66 and Kalyansona. Root growth was inhibited in the presence of Al but B supply especially at 200 µM B in the Kalyansona cultivar caused a slight improvement.     

Varietal differences in the growth of rice plants in response to aluminum and silicon

Effects of Al (0–100 μM) and Si (0–2,000 μM) supplied singly or in combination on root growth of different rice varieties were examined under hydroponic conditions. Al addition inhibited root elongation of rice plants, and the inhibition increased with increasing amount of Al in the culture solution. Among 22 indica varieties and among 8 japonica varieties tested, IAC3 and Nakateshinsenbon were relatively tolerant to AI, respectively, whereas IR45 and Norinl were relatively sensitive to AI, respectively. Si exerted a beneficial effect at all levels of Si treatment on indica varieties, whereas Si supply resulted in a slight increase in the root dry weight of japonica varieties only at the highest level (2,000 μM Silo The alleviation of Al inhibition of rice root growth by Si was observed in the combination of Al and Si treatments. Alleviation was more pronounced for all the Si treatments in indica varieties than in japonica varieties, and the alleviation was maximum with 2,000 μM Si in IR45. The alleviation effect by Si was more pronounced in the AI-sensitive varieties than in the AI-tolerant varieties. The application of Si resulted in an increase in the contents of Al and Si in plants, and there was no relationship between the Al content and Al inhibition in plants.     

Post-logging loss of genetic diversity in a mahogany (Swietenia macrophylla King,Meliaceae) population in Brazilian Amazonia

Big-leaf mahogany (Swietenia macrophylla King, Meliaceae) is the most valuable widely traded timber species from the Neotropics. Mahogany has been severely overexploited throughout its natural range, which stretches from southern Mexico through Central and South America as far south as the Bolivian Amazon. We investigated effects of selective logging on the genetic diversity of a mahogany population in eastern Amazonia. Using eight hypervariable microsatellite loci, we estimated the number of alleles per locus (A), mean expected and observed heterozygosity (H_e, H_o), the number of distinct multilocus genotypes (G_o), and the inbreeding coefficient (f) for pre- and post-logging cohorts (adults and seedlings) collected over identical spatial scales. We found a significant reduction in the number of alleles, observed heterozygosity, and distinct multilocus genotype number in the post- compared to the pre-logging cohort. The loss of genetic diversity is likely to have occurred due to a reduction in the effective population size as a consequence of logging, which leads to the loss of alleles and limits mating possibilities. The results raise concerns about the conservation genetics of logged mahogany populations where a high proportion of adults are removed from the system. We suggest initiatives to promote the maintenance of genetic diversity as an integral part of the production system, allowing genetically sustainable use of this valuable timber resource.     

Physiological characteristics of blue sac disease in chum salmon alevins

Fisheries Science - Blue sac disease (BSD) in salmonids results in the abnormal accumulation of ascites fluid and can often lead to mass mortality. However, the symptoms and causes of BSD remain...     

Antinociceptive effect and acute toxicity of the essential oil of Hyptis fruticosa in mice

The essential oil of the Hyptis fruticosa leaves was analyzed by GC/MS and evaluated for antinociceptive property as well as acute toxicity in mice. The essential oil, at doses of 100, 200, and 400 mg/kg (s.c.), produced significant inhibition of acetic acid-induced writhing, but did not manifest a significant effect in hot-plate test. There was no acute toxicity at doses up to 5 g/kg. Bicyclogermacrene, 1,8-cineole, alpha-pinene, and beta-caryophyllene were the major compounds detected in the essential oil.     

Antinociceptive effect and acute toxicity of the Hyptis suaveolens leaves aqueous extract on mice

The aqueous extract of Hyptis suaveolens leaves was studied for their antinociceptive property in chemical and thermal models of nociception in mice. Oral administration of the aqueous extract (100, 200, and 400 mg/kg) dose-dependently reduced the number of writhings induced by acetic acid, decreased the licking activity of the early phase in formalin test and increased the reaction time in hot-plate test. The antinociceptive effect was significantly antagonized by naloxone (3 mg/kg; i.p.). Preliminary acute toxicity study showed that no animal death with doses up to 5 g/kg (p.o.).