Diversity of rDNA-ITS sequences of <Emphasis Type="Italic">Polymyxa graminis</Emphasis> from wheat and barley in Japan

Polymyxa graminis is a soil-borne obligate organism that transmits bymoviruses and furoviruses to barley and wheat. We analyzed rDNA-ITS sequences of P. graminis from roots of wheat and barley in fields in Japan and obtained five kinds of sequences; two sequences were almost the same as known ribotype Ia and IIa, respectively, and three were close to ribotype Ib. When infection of P. graminis was examined using PCR, ribotype Ia was detected only in barley, but ribotypes Ib and IIa were detected in both wheat and barley. Our analysis suggested that Japanese ribotype Ib transmits furoviruses and bymoviruses.     

Microbial biomass as an antioxidant for tilapia feed

Microbial biomass (MB) produced by different industries is thought to be a beneficial supplement in fish feed due to high contents of antioxidants and pigments. However, little is known about their impact on fish health. In this experiment, 960 tilapia (26.84 ± 1.03 g) were fed one of eight experimental diets—a control diet with no MB (C), a control diet with vitamin E (VE) and six diets with three types of MB at two concentrations (0.25% and 0.5%): Rubrivivax gelatinosus (RG25 and RG50), Spirulina platensis (SP25 and SP50) and Saccharomyces cerevisiae (SC25 and SC50). Adding MB to diets decreased plasma total oxidant status, malonaldehyde and leucocyte respiratory burst; increased the total antioxidant status; and did not affect the blood biochemical parameters. In flesh, the use of the MB lowered the thiobarbituric acid‐reactive substances and increased redness (except for SC) and carotenoid deposition (except SC25). So, it was concluded that the use of the MB provided an antioxidant effect in tilapia blood plasma, decreased lipid oxidation and increased pigmentation and carotenoid deposition in the fish flesh, without imparting a negative impact on the animals’ health.     

Evaluation of Multi-Mixtures of Acids for the Sample Preparation of Organic Soil Amendments for Multi-Element Determination by ICP OES

A method for the simultaneous determination of aluminum (Al), arsenic (As), calcium (Ca), cadmium (Cd), chromium (Cr), copper (Cu), iron (Fe), magnesium (Mg), manganese (Mn), phosphorus (P), lead (Pb), sulfur (S), selenium (Se), vanadium (V), and zinc (Zn) in organic soil amendments using microwave-assisted acid digestion and inductively coupled plasma optical emission spectroscopy (ICP OES) is proposed. Concentrated or diluted acids mixtures (HNO₃, HF, HBF₄, and H₃BO₃) combined or not with H₂O₂ were systematically evaluated in order to achieve the best digestion procedure for masses of around 150 mg of samples. Principal component analysis (PCA) was applied in order to choose the best acid mixture for digestion (3 mL HNO₃ + 1 mL HBF₄ + 2 mL H₂O). The determined concentrations were in accordance with certified values of CRM 029 at the 95% confidence level, according to the Student-t test. This acid mixture was successfully applied for the digestion of four organic soil amendment samples (organic fertilizers, substrates, and soil conditioners) and element determination.     

Differential response of soybean genotypes to two lime rates

Soybean [Glycine max (L.) Merril] is the leading food crop worldwide, and selection of soybean genotypes for different levels of soil acidity may raise crop yield without the need to increase in planted area. An experiment in greenhouse conditions was conducted to determine the effects of two lime rates on soil chemical properties, grain yield (GY), yield components, nutritional status and physiological components of 15 soybean genotypes adapted to tropical and subtropical conditions. Genotypes BMX Apolo RR, BMX Potência RR, BRS 295RR, BRS 359RR, FPS Solar IPRO and TMG 716 IRR were the least responsive to soil acidity reduction, and BMX Turbo RR and BRS 360RR were the most responsive. Number of pods per pot, shoot dry weight yield, GY, photosynthesis, stomatal conductance, transpiration and chlorophyll increased significantly with increase in lime rate. Cultivar FPS Solar IPRO showed the highest foliar P, K, Ca and Mg concentrations in soybean, which was not observed in the grain, indicating the presence of genetic factors and the dilution effect on nutrient uptake.     

Evaluation of antirotavirus activity of flavonoids

Flavonoids are dietary components and the most ubiquitous phenolic compounds found in nature, showing a range of pharmacological activities including antiviral action. This study describes the antiviral screening of 60 different flavones and flavonols against human rotavirus (Wa-1 strain) as well as their cytotoxicity in MA104 cells. Cytotoxicity was investigated by cell morphology assessment and antirotavirus activity by cytopathic effect inhibition. Results were expressed as CC₅₀ and IC₅₀, respectively, in order to calculate the selectivity index (SI = CC₅₀/IC₅₀) of each compound. Structure–activity relationships (SAR) were proposed based on antirotavirus activity.     

Mapping the effect of spatial and temporal variation in climate and soils on Eucalyptus plantation production with 3-PG,a process-based growth model

In the wet tropics, near the Atlantic Coast of Brazil, drought may reduce plantation yields by as much one-third over a six-to-seven-year rotation. For land owners, annual variation in production cannot be estimated with empirical models. In this paper, we examine whether the process-based growth model, 3-PG is sufficiently sensitive to climatic variation to provide a virtual record of changes in growing stock across 180,000 ha eucalypt plantation estate. We first mapped variation in climate and soil properties, and then ran simulations for the current planted forest with ages varying from one to seven years. Model predictions of stand volume and mean tree diameter agreed closely with measurements acquired on 60 reference plots monitored over the test period; the prediction of mean annual increment (MAI) was less reliable. Available soil water (ASW) and leaf area index (LAI) were also measured and compared with the model estimations. Vapour pressure deficit (VPD) and ASW accounted for most of the variation in yields. We conclude that this spatial modelling approach offers a reasonable alternative to extensive ground surveys, particularly when climatic variation extends beyond the historical average for a region.     

Bacterial pigment for Nile tilapia feeding

The aim of this study was to evaluate the effects of different carotenoids sources in tilapia fish diets on the animals’ performance and fillets characteristics. Nine hundred and sixty tilapias, Oreochromis niloticus, averaging 15 g were distributed into 24 tanks to receive one of the six treatments (four repetitions) for 80 days: basal diet with no pigment (control group), basal diet with 350 mg/kg astaxanthin 10 % and basal diets added of four different concentrations of Rubrivivax gelatinosus biomass (175, 350, 700 and 1400 mg/kg). Variables analyzed included feed consumption, weight gain, feed conversion and specific growth rate for the animals and pH, proximate composition, carotenoids, polyunsaturated fatty acids and color for the fillets. Productive parameters did not differ statistically. Moisture content was lower on the fillets of treatments with pigments. The protein contents on the fillets of diets supplemented with the bacterial biomass were higher than in control group, while pH, minerals and lipids did not vary among treatments. Lightness and yellowness did not differ among the treatments, but redness and carotenoids contents were higher for all the groups that received the pigments than for the control group. The ratio of polyunsaturated fatty acids n-6/n-3 was improved with the dietary biomass. So, it was concluded that the use of the pigmenting ingredients did not alter productive parameters but increased redness and carotenoids contents in the fillets. Moreover, the use of R. gelatinosus biomass also increased the protein contents and improved the fatty acids profile in the fillets.     

Molecular mapping of a gene conferring resistance to Aphanomyces root rot (black root) in sugar beet (<Emphasis Type="Italic">Beta vulgaris</Emphasis> L.)

Caused by Aphanomyces cochlioides Drechsler, Aphanomyces root rot is a serious disease of sugar beet (Beta vulgaris L.), for which sources of resistance are scarce. To identify the segregation pattern of the rare resistance trait found in Japanese sugar beet line ‘NK-310mm-O’, F₁ and BC₁F₂ seedings, drawn from a cross between ‘NK-310mm-O’ and susceptible line ‘NK-184mm-O’, were inoculated with zoospores and their survival evaluated in the greenhouse. Resistance segregation followed was that of a single dominant gene, which was designated Acr1 (Aphanomyces cochlioides resistance 1). Molecular markers tightly linked to Acr1 were identified by bulked segregant analysis of two BC₁F₂ populations. Fourteen AFLP markers linked to Acr1 were identified, the closest located within ±3.3 cM. Three F₅ lines and two BC₂F₁ lines, selected on the basis of their Acr1-AFLP markers, were tested for their resistance to Aphanomyces root rot in a highly infested field. Results indicated that Acr1 conferred significant resistance to Aphanomyces root rot at the field level. Based on its linkage with CAPS marker tk, a representative marker for chromosome III, Acr1 was located on this chromosome. The clear linkage between tk and Rhizomania resistance trait Rz1, suggests the clustering of major disease resistance genes on chromosome III.     

Ploidy variation of hardy kiwifruit (Actinidia arguta) resources and geographic distribution in Japan

Survey on the wild genetic resources of hardy kiwifruit (Actinidia arguta) in Japan was conducted to determine the ploidy variation and its geographic distribution. Among the 127 wild plants collected from different geographic locations, 15 plants were diploid, 87 were tetraploid, and 22 were hexaploid. Additionally, 2 plants were heptaploid and one plant was octaploid. The tetraploid plants were distributed all over the country, whereas the diploid and hexaploid plants were geographically localized, in the warm Pacific hill areas of the south western part and in the deep-snow region of the mid-northern part of Honshu, respectively. The diploid plants could be clearly distinguished from other plants with ploidy variation by the morphological characteristics of the leaf and fruit. Hexaploid plants showed a relatively larger L/D ratio of the leaf blade, a greenish petiole, and pubescence on the petiole and lower leaf vein, whereas the tetraploid plants exhibited a reddish petiole and callose hairs on the vein of the lower leaf surface. Fruit shape of the tetraploid plants varied largely, from round to ellipsoidal, whereas that of the hexaploid plants was mostly ellipsoidal. These results indicate that the hexaploid plants of A. arguta as well as the diploid and tetraploid ones, naturally grow in a certain size of population in the restricted region of Japan.