Physiological responses to central and peripheral injection of polyinosinic-polycytidylic acid in chicks

1. The purpose of the present study was to determine if intracerebroventricular (ICV) and intraperitoneal (IP) injection of polyinosinic-polycytidylic acid (poly I:C), a viral mimetic that binds to toll-like receptor-3 (TLR3), affects food intake, voluntary activity, cloacal temperature, plasma corticosterone (CORT) and glucose concentrations, and crop emptying rate in chicks (Gallus gallus).

2. Both ICV and IP injection of poly I:C significantly decreased food intake.

3. IP but not ICV injection of poly I:C significantly suppressed voluntary activity, whereas ICV injection decreased time spent sitting. Both ICV and IP injection of poly I:C significantly increased plasma CORT and glucose concentration. Neither ICV nor IP injection of poly I:C significantly affected cloacal temperature.

4. In addition, ICV injection of poly I:C significantly reduced crop emptying rate, whereas IP injection had no effect.

5. These results suggested that central TLR3 is related to anorexia, stress response and retardation of crop emptying while peripheral TLR3 is related to anorexia, change in behaviour and stress responses during viral infection in chicks.     

Genotypes and allele frequencies of buried SNPs in a bovine single‐nucleotide polymorphism array in Japanese Black cattle

Single nucleotide polymorphism (SNP) arrays are widely used for genetic and genomic analyses in cattle breeding; thus, data derived from SNP arrays have accumulated on a large scale nationwide. Commercial SNP arrays contain a considerable number of unassigned SNPs on the chromosome/position on the genome; these SNPs are excluded in subsequent analyses. Notably, the position‐unassigned SNPs, or “buried SNPs” include some of the markers associated with genetic disease. In this study, we identified the position of buried SNPs using the Basic Local Alignment Search Tool against the surrounding sequences and characterized the relationship between SNPs and genetic diseases in Online Mendelian Inheritance in Animals based on the genomic position. We determined the position of 285 buried SNPs on the genome and surveyed the genotype and allele frequencies of these SNPs in 5,955 individual Japanese Black cattle. Eleven SNPs associated with genetic disease, which contained five buried SNPs, were found in the population with the risk allele frequency ranging from 0.00008396 to 0.46. These results indicate that buried SNPs in the bovine SNP array can be utilized to identify associations with genetic disorders from large scale accumulated SNP genotype data in Japanese Black cattle.     

Inheritance and geographical distribution of phenol reaction-less varieties of barley

Summary The reaction of spikes and grains of barley to phenol was investigated using 8,849 cultivated and 349 wild accessions collected from the world. The pericarp and hull of the grain were stained dark brown by a 1% phenol solution and the reaction of awn was sharpest. Phenol reaction was controlled by a dominant gene, named Phr (phenol reaction) which was located on chromosome 2. All the wild strains of various Hordeum species showed a positive reaction to phenol indicating it was the prototype of the trait. Only 51 accessions of cultivated barley showed negative reaction to phenol. They were distributed along the so-called Silk-road and the type of variety was limited suggesting that it was a rather new mutation which occurred in the Middle East. Synteny of the chromosome region involving the phenol reaction gene in some gramineous plants was discussed.     

Gene expression profiling in embryonic chicken ovary during asymmetric development

The reproductive system in female birds arises as bilateral asymmetrical anlagen, excluding the birds of prey. Earlier, histological and messenger RNA (mRNA) expression profile studies of several genes related to gonadal sex differentiation in chicken embryos tried to elucidate the query of this asymmetry in a scattered manner. To understand the matter precisely, we have focused on mRNA expression of a cohort of genes (FSHR, CYP19A1, caspase 3, caspase 8) in second half of the embryonic days (E10–E18). The established role of leptin in development of the embryo and its expression in the embryonic ovary also drove us to check leptin receptor (LEPR) expression in the ovary. Increased expression of FSHR and CYP19A1 in the left ovary compared with that in the right ovary was identified (P < 0.05), promoting preferential left ovarian development and functionality. Significant high expression (P < 0.05) of the apoptotic genes in the right ovary were also involved here. Leptin probably has no direct influence on ovarian asymmetry as no significant variation in gonadal mRNA expression of LEPR was observed within the same experimental days. We propose that asymmetric expression of this cohort of genes (FSHR, CYP19A1, caspase 3, caspase 8) leads to the development of dimorphic gonads during embryogenesis.     

Randomized clinical trial to evaluate the effectiveness of enrofloxacin as a second‐line antibiotic for treatment of acute Escherichia coli mastitis

The objective of the present study was to evaluate the effectiveness of enrofloxacin (ERFX) as a second‐line antibiotic for treatment of acute Escherichia coli (E. coli) mastitis. Forty‐two cows with naturally occurring acute E. coli mastitis were enrolled. On the first day of treatment (day 0), empirically selected antibiotics (oxytetracycline: n = 32, kanamycin: n = 10) were administered. Although systemic signs improved in 10 cows (first‐line group), the signs remained unchanged or worsened in 32 cows on day 1, including two cows that were found dead. The 30 surviving cows were randomly assigned to second‐line groups constituting an ERFX group (n = 19) or a control group (n = 11) that was treated with other antibiotics. Response to each treatment was evaluated by measuring clinical signs from day 0 to day 3, subsequent quarter milk recovery, and the 60‐day survival rate. Appetite on day 3 was significantly better in the ERFX group compared to the control group. No significant differences were observed in the 60‐day survival rate or the subsequent milk recovery between the ERFX group and the control group. Thus, the use of ERFX as a second‐line antibiotic for the treatment of acute E. coli mastitis could induce a rapid appetite recovery.     

Effects of root zone trenching on soil nitrogen dynamics in Japanese cedar and cypress plantations

The effects of root exclusion and planted tree species on soil nitrogen (N) dynamics were examined at two plantations, one planted with Japanese cedar and the other with Japanese cypress. We set up ten 1 × 1 × 0.2-m-deep trenched sites and ten untrenched control sites at each plantation. We measured the pool size and leaching of inorganic N at each site for 2 years and the net N mineralization 1 and 2 years after trenching. Despite similar soil conditions, the cedar plantation showed higher net N mineralization than the cypress plantation. Stopped tree uptake of N was expected to cause an increased pool size and leaching of inorganic N at the trenched sites. Nevertheless, we found no significant increase in those variables at both plantations. The trenched cypress sites showed no decrease in the net N mineralization during the 2 years after trenching. However, the net nitrification at the trenched cypress sites increased remarkably at the deeper horizons in comparison with that at the control sites. Enhanced nitrification might result from improved ammonium availability through root exclusion. Net N mineralization at the trenched cedar sites decreased more than 60% compared with that at the control sites 2 years after trenching. Higher nitrification potential at the cedar plantation and enhanced nitrification potential at the trenched cypress sites never resulted in increased leaching of N, due to added fine root litter which acted as an immobilization agent for excess N, thus preventing N loss.     

Functional relationships between crown morphology and within-crown characteristics of understory saplings of three codominant conifers in a subalpine forest in central Japan

Light-related plasticity of crown morphology and within-crown characteristics were investigated in understory sun and shade saplings of three codominant subalpine conifers, Abies mariesii M.T. Mast., Abies veitchii Lindl. and Picea jezoensis var. hondoensis (Mayr) Rehd. Compared with those of sun saplings, current-year shoots of shade saplings allocated less biomass to needles, resulting in less dense needle packing and hence less mutual needle shading. The proportion of lateral branch biomass in foliage was either similar in sun and shade saplings or greater in shade saplings, depending on the species, suggesting that, over the lifetime of a branch, greater needle longevity in shade compensates for reduced biomass investment in needles of current-year shoots of shade saplings. Saplings with slower-growing branches tended to have greater needle life spans, suggesting that plasticity of branch growth rate and plasticity of needle life span are interdependent. Both Abies species showed greater light-related plasticity of needle life span and branch growth than P. jezoensis. The greater shade tolerance of the Abies species derives from their broad flattened crowns with slow-growing branches. This type of crown development incurs substantial support costs, but the long needle life span of shade saplings of the Abies species compensates, at least in part, for their low annual investment in foliage, especially in the case of A. mariesii, which has a longer needle life span and slower-growing and stouter branches than A. veitchii. Compared with the Abies species, P. jezoensis had a less plastic crown morphology, and less variability of needle life span and branch growth in response to light, resulting in lower shade tolerance. However, compared with the flattened crown of Abies shade saplings, the conical crown of P. jezoensis saplings imposes a smaller support cost, making this species better adapted to rapid height growth than to survival in shade.     

Changes in shoot properties in relation to vertical positions within the crown of mature canopy trees of Abies mariesii and Abies veitchii

We investigated current shoot properties in two contrasting vertical positions (leader crown; LC, and lower branch; LB) within the crowns of mature trees of two subalpine conifer species, Abies mariesii and A. veitchii. For both LCs and LBs, shoot length decreased with increasing branching order. However, shoot properties were different between LCs and LBs. Shoots in LCs had more needle biomass per unit of shoot length. Shoots in sunny conditions pack needles closer along the shoot and intercept incoming light more completely. This causes the shoots in the LCs to have more needles. In contrast, less needle packing per unit shoot length in LBs results in the avoidance of mutual shading among needles in order to intercept limited light more effectively. Because branch systems in lower layers tend to be more shaded, the quantity of irradiance received by the shoots in LBs is smaller. Thus, reduced needle amounts on the shoots in LBs reflect the needle arrangement acclimating to the lower light availability. This study suggests the importance of changes in the properties of individual shoot as a component of a branch system and accordingly a whole-crown system in mature canopy trees of A. mariesii and A. veitchii.     

Effects of undisturbed canopy structure on population structure and species coexistence in an old-growth subalpine forest in central Japan

We investigated structural and compositional characteristics of an old-growth subalpine forest in central Japan, to ascertain forest dynamics and species coexistence. The forest appeared to have been fairly-undisturbed, at least during several recent decades, judging from the maximum occupancy of space by living canopy trees and an unchanged canopy structure between pre- and post-mortality phase. This stable forest showed minimum-scale dynamics that occurred primarily at a single-tree scale. Within this forest, the dominant species were Abies mariesii, A. veitchii and Picea jezoensis var. hondoensis. The two Abies species were abundant and showed advance regeneration, resulting from their high shade-tolerance. On the other hand, Picea showed the greatest basal area, in spite of its lower density. Picea showed steeper initial height-diameter allometric slopes, suggesting that its understorey saplings could increase height more rapidly under sunny conditions. Picea regenerates, given the opportunity of larger disturbances, as approximately even-aged cohorts, and then escapes competition from other shade-tolerant species by attaining the uppermost part of the canopy, resulting from rapid height growth of sapling, longer longevity and emergent attainable height. However, beneath the undisturbed canopy of this forest, in spite of its many seedlings, Picea entirely lacked regenerating individuals, suggesting that its regeneration is in a fairly-limited stage. This suggests that within the undisturbed forest, a demographic trait of Picea, in which the lower mortality of its canopy trees can compensate for its lower recruitment, is not enough to explain its stable coexistence with shade-tolerant Abies spp. Thus, not only the demographic trait, but also the spatial/temporal disturbance magnitude is important for an explanation of the coexistence of Picea with Abies. Consequently, it seems that not only equilibrium process, such as species differences in life-history traits, but also non-equilibrium process, such as disturbances, is crucial for their coexistence in this subalpine forest in central Japan.