Development of genic molecular markers linked to a rust resistance gene in cultivated groundnut (Arachis hypogaea L.)

Development of molecular markers for different economically important traits in cultivated groundnut has progressed at slow pace. Although many genomic SSR markers were developed in both the wild and cultivated groundnut, the genetic linkage map in the species is still not saturated. Availability of a large number of ESTs in GenBank opened up the possibility of integrating new markers and to identify markers closely linked to agronomic traits. EST-SSR markers are also considered as genic molecular markers. In this study, 259 EST-SSR markers were developed by mining 5,184 Arachis hypogaea ESTs from NCBI database. These EST-SSRs and 34 resistance gene candidate markers were used for association and genetic mapping of rust resistance in cultivated groundnut. From these, Cer2, SSR_GO340445, SSR_HO115759, SSR_GO341324 and RGC 2 had a significant association with rust resistance based on locus-by-locus AMOVA and/or Kruskal?CWallis ANOVA. Some of these associated markers also had protein activity related to biotic stress responses. Through genetic mapping, EST-SSR markers SSR_GO340445 and SSR_HO115759 were found closely linked to a rust resistance gene at 1.9 and 3.8?cM distances, respectively. These markers are thus suitable candidates for marker assisted selection in groundnut. The tight linkage of SSR_GO340445 would be helpful to screen BAC clones and to isolate rust resistance gene in groundnut.     

Salvinia natans — as the scavenger of Hg(II)

The plant, Salvinia natans L., was found effective in the removal of Hg(H) from wastewater. Maximum accumulation was noted within a day and maximum removal (about 90%) was recorded below 5 ppm of Hg(II). Accumulation of the metal occurred mainly in the roots. The senescence of the plant started at and above 5 ppm of Hg(H). The biochemical constituents like chlorophyll, Hill-activity, Protein, RNA, dry weight, and activities of catalase and protease decreased while free amino acid content, peroxidase activity and the ratio of acid to alkaline pyrophosphatase activity increased over control values at and above 5 ppm of Hg(H).     

Just Add Water and Salt: the Optimisation of Petrogenic Hydrocarbon Biodegradation in Soils from Semi-arid Barrow Island, Western Australia

We investigated the potential of soil moisture and nutrient amendments to enhance the biodegradation of oil in the soils from an ecologically unique semi-arid island. This was achieved using a series of controlled laboratory incubations where moisture or nutrient levels were experimentally manipulated. Respired CO₂ increased sharply with moisture amendment reflecting the severe moisture limitation of these porous and semi-arid soils. The greatest levels of CO₂ respiration were generally obtained with a soil pore water saturation of 50?C70%. Biodegradation in these nutrient poor soils was also promoted by the moderate addition of a nitrogen fertiliser. Increased biodegradation was greater at the lowest amendment rate (100 mg N kg^?1 soil) than the higher levels (500 or 1,000 mg N kg^?1 soil), suggesting the higher application rates may introduce N toxicity. Addition of phosphorous alone had little effect, but a combined 500 mg N and 200 mg P kg^?1 soil amendment led to a synergistic increase in CO₂ respiration (3.0×), suggesting P can limit the biodegradation of hydrocarbons following exogenous N amendment.     

Species-specific myoglobin oxidation

The effect of the lipid oxidation product, 4-hydroxy-2-nonenal (HNE), on oxidation of oxymyoglobin (OxyMb) from seven different meat-producing species was investigated. Relative to controls, HNE increased OxyMb oxidation within all species (p < 0.05) at both 25 and 4 °C, pH 5.6. The relative effect of HNE was greater for myoglobins (Mbs) that contained 12 ± 1 histidine (His) residues than for those that contained 9 His residues (p < 0.05); HNE efficacy in all species except chicken and turkey decreased with time. Mono-HNE adducts were detected in all species except chicken and turkey. In general, HNE alkylation increased the Mbs' ability to accelerate lipid oxidation in a microsome model. However, neither an HNE nor a Mb species dependent effect was observed. Results suggested that microsome model system associated lipid oxidation overshadowed HNE and species effects on OxyMb oxidation observed in lipid-free systems.     

A review on the recent advances and application of vaccines against fish pathogens in aquaculture

Globally, aquaculture has faced serious economic problems due to bacterial, viral, and various other infectious diseases of different origins. Even though such diseases are being detected and simultaneously treated with several therapeutic and prophylactic methods, the broad-spectrum activity of vaccines plays a vital role as a preventive measure in aquaculture. However, treatments like use of antibiotics and probiotics seem to be less effective when new mutant strains develop and disease causing pathogens become resistant to commonly used antibiotics. Therefore, vaccines developed by using recent advanced molecular techniques can be considered as an effective way of treating disease causing pathogens in aquatic organisms. The present review emphasizes on the current advances in technology and future outlook with reference to different types of vaccines used in the aquaculture industries. Beginning with traditional killed/inactivated and live attenuated vaccines, this work culminates in the review of modern new generation ones including recombinant, synthetic peptides, mucosal and DNA, subunit, nanoparticle-based and plant-based edible vaccines, reverse vaccinology, and monovalent and polyvalent vaccines.

     

Impact of different combined doses of fertilizers with plant growth regulators on growth, yield attributes and yield of mustard (Brassica campestris cv. B9) under old alluvial soil of Burdwan, West Bengal, India

Field experiments were conducted with mustard (Brassica campestris cv. B₉) consecutively for three years (2005, 2006 and 2007) in the Crop Research and Seed Multiplication Farm of Burdwan University, Burdwan, West Bengal, India. In the first year, varietal screening of mustard under recommended dose of chemical fertilizer (100:50:50) were performed with seven mustard varieties during November 2005 to February 2006. In the second year, two experiments were conducted to study the effects of six different combined doses of chemical fertilizer and biofertilizer and six different levels of growth retardant cycocel. In the third year, six different levels of compost along with the best screened dose of growth retardant (CCC-300 ppm) and the best combined dose of biofertilizer and chemical fertilizer (3/4thchemical fertilizer:1/4th biofertilizer) from the previous year were applied to study the effects on agronomic traits and growth attributes of mustard, and the field data were analyzed statistically. The variety B₉ recorded a significant higher seed yield along with other yield contributing factors, which was found to be superior to other varieties under old alluvial soil of Burdwan, West Bengal, India, in 2005. In 2006 and 2007, seed yield was found to be the best for CCC-300 ppm treatment and the best combined dose of biofertilizer and chemical fertilizer was found to be 3/4th chemical fertilizer:1/4th biofertilizer. In 2007, the best yield was given by the treatment of 7.5 t·hm^?2 compost along with the best dose of growth retardant cycocel and the best combined dose of biofertilizer and chemical fertilizer.     

Sustained release of complexed DNA from films: Study of bioactivity and intracellular tracking

Sustained DNA delivery from polymeric films provides a means for localized and prolonged gene therapy. However, in the case of bioactive molecules such as plasmid DNA (pDNA), there are limitations on the achievable release profiles as well as on the maintenance of bioactivity over time. In this report, the authors have investigated the bioactivity of the released DNA (naked and complexed with lipofectamine) from polymeric films using in vitro cell transfection of COS-7 cell lines. The polymeric system consists of a biodegradable semicrystalline polymer such as poly(ε-caprolactone) (PCL) with or without blended gelatin. Sustained release of lipoplexes and of pDNA is shown over several days. However, lipoplexes released from pure PCL films show no transfection on day 18, whereas lipoplexes released from PCL-gelatin films continue to transfect cells on day 18 of release. Confocal studies were used to determine the reasons for this difference in transfection efficiency, and it is proposed that association of the lipoplex with gelatin confers protection from degradation in the cytoplasm. The results also showed that the bioactivity of released lipoplexes was superior to that of the naked pDNA. For both naked pDNA and the lipoplexes, the presence of gelatin helped to maintain the bioactivity over several days.     

Phenotypic characterization and nuclear microsatellite analysis reveal genomic changes and rearrangements underlying androgenesis in tetraploid potatoes (Solanum tuberosum L.)

Two (di)haploids (2n = 2x = 24) and nine tetraploids (2n = 4x = 48) obtained from Solanum tuberosum through anther culture were characterized for nDNA variation, phenotypic variation and nuclear microsatellite polymorphism. Androgenic (di)haploids were also characterized for late blight resistance. The (di)haploid C-13 was derived from Indian tetraploid potato cv. Kufri Chipsona-2, while D4 from TPS (true potato seed) parental line JTH/C-107, which is an interspecific hybrid between Indian tetraploid cv. Kufri Jyoti and diploid (2n = 2x = 24) cultivated species S. phureja Juz. & Buk. IVP-35. C-13 and D4 (both male-fertile) could be distinguished from their corresponding tetraploid anther donors based on plant height, shoot number, terminal leaflet length and width, leaf ratio, anther length, pollen diameter and corolla width and radius. A complete reversal of flower color occurred in D4, and C-13 was highly resistant to late blight. Most interestingly, about 3–7% increase in nDNA content occurred in most of the anther-derived tetraploids. Both the androgenic (di)haploids and their anther donors had unique genotypes at the microsatellite loci POTM1-2, STM0015 and STM0019b. However, the nine anther-derived tetraploids shared the same allelic profiles with their anther donor JTH/C-107 at all the microsatellite loci, except at STM0019a where they were characterized by the absence of a standard donor allele (186-bp). A typical (di)haploid-specific allele was detected for the locus STWAX-2 where the standard donor alleles were replaced by a 230-bp allele in both C-13 and D4. The over-expression of microsatellite variation in D4 that also shows triallelic profiles at the microsatellite loci POTM1-2 and STM0015 can perhaps be attributed to its chimeric structure, which might have been formed through incomplete fusion of two different pro-embryos during the first steps of microspore division.     

Evaluation of conservation interventions using a cellular automata-Markov model

The field of biodiversity conservation increasingly recognizes the need for empirical evaluations of conservation interventions. While the amount of money invested into conservation and the number of protected areas across the globe have been increasing in the past few decades, few well-designed empirical studies try to show what could have happened in the absence of the conservation efforts. In this paper, we propose an empirical method to evaluate such conservation intervention. We integrate a cellular automata-Markov modeling approach and a counterfactual approach showing what may have happened in the absence of a certain conservation intervention. We test this method in a human-dominated tropical landscape in Central India; however, our method is transferable to any other socio-ecological setting. The study area is located in the tropical forests of Central India and has witnessed several management strategies since its declaration as a protected area in the mid-1970s. However, landscape practitioners have identified the revised forest policy of 1988 to play a vital role in this landscape. We chose this particular forest policy as the conservation intervention in our study and tested our method using this landscape as a template. We used remote sensing and GIS techniques to analyze multi-sensor satellite data from the last 30 years to monitor forest transitions and compare them with the counterfactual scenario. Our findings not only shed light on the importance of national-level policies in governing forest dynamics, but also established our proposed method as an effective tool for empirical evaluation of conservation intervention, particularly in developing countries.