Evaluating methods for identifying large mammal road crossing locations: black bears as a case study

Landscape Ecology - Roads have several negative effects on large mammals including restricting movements, isolating populations, and mortality due to vehicle collisions. Where large mammals...     

Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella

Horizontal gene transfer plays a major role in microbial evolution. However, newly acquired sequences can decrease fitness unless integrated into preexisting regulatory networks. We found that the histone-like nucleoid structuring protein (H-NS) selectively silences horizontally acquired genes by targeting sequences with GC content lower than the resident genome. Mutations in hns are lethal in Salmonella unless accompanied by compensatory mutations in other regulatory loci. Thus, H-NS provides a previously unrecognized mechanism of bacterial defense against foreign DNA, enabling the acquisition of DNA from exogenous sources while avoiding detrimental consequences from unregulated expression of newly acquired genes. Characteristic GC/AT ratios of bacterial genomes may facilitate discrimination between a cell's own DNA and foreign DNA.     

Timing, duration, and transitions of the last interglacial Asian monsoon

Thorium-230 ages and oxygen isotope ratios of stalagmites from Dongge Cave, China, characterize the Asian Monsoon and low-latitude precipitation over the past 160,000 years. Numerous abrupt changes in 18O/16O values result from changes in tropical and subtropical precipitation driven by insolation and millennial-scale circulation shifts. The Last Interglacial Monsoon lasted 9.7 +/- 1.1 thousand years, beginning with an abrupt (less than 200 years) drop in 18O/16O values 129.3 +/- 0.9 thousand years ago and ending with an abrupt (less than 300 years) rise in 18O/16O values 119.6 +/- 0.6 thousand years ago. The start coincides with insolation rise and measures of full interglacial conditions, indicating that insolation triggered the final rise to full interglacial conditions.     

Pigeonpea improvement: An amalgam of breeding and genomic research

In the past five decades, constant research has been directed towards yield improvement in pigeonpea resulting in the deployment of several commercially acceptable cultivars in India. Though, the genesis of hybrid technology, the biggest breakthrough, enigma of stagnant productivity still remains unsolved. To sort this productivity disparity, genomic research along with conventional breeding was successfully initiated at ICRISAT. It endowed ample genomic resource providing insight in the pigeonpea genome combating production constraints in a precise and speedy manner. The availability of the draft genome sequence with a large‐scale marker resource, oriented the research towards trait mapping for flowering time, determinacy, fertility restoration, yield attributing traits and photo‐insensitivity. Defined core and mini‐core collection, still eased the pigeonpea breeding being accessible for existing genetic diversity and developing stress resistance. Modern genomic tools like next‐generation sequencing, genome‐wide selection helping in the appraisal of selection efficiency is leading towards next‐generation breeding, an awaited milestone in pigeonpea genetic enhancement. This paper emphasizes the ongoing genetic improvement in pigeonpea with an amalgam of conventional breeding as well as genomic research.     

Commuting distances to local non‐farm workplaces and out‐migration: The case of Northeast Thailand

The relationship between commuting distances and where people work has been studied for urban contexts in both developed countries and developing countries. However, few studies have examined the situation in rural areas, and none look at commuting distances to non‐farm workplaces in rural areas of developing countries. This paper investigates how commuting distance, and thus accessibility, to local non‐farm work influences non‐farm employment and out‐migration from rural villages in Northeast Thailand. The main issues examined are: (i) the distance that rural residents travel to work in local non‐farm jobs; and (ii) the influence that local non‐farm employment has on the number of outmigrants from rural villages. The study finds: (i) distance between villages and non‐farm work sites impact the number of villagers who are employed in regular wage work; (ii) beyond 20 km villagers are less likely to travel to non‐farm employment using their own means of transportation; and (iii) employment in regular wage work decreases outmigration. The findings from this study contribute to the debates over the drivers of rural out‐migration, rural livelihood changes, and agrarian changes that are taking place in Southeast Asia.     

Carbonate mineral filtrants with new surfaces reduce alkalinity in seawater and artificial seawater: Preliminary findings

Silica sand (silica), coral (aragonite), and oyster shell (calcite) were ground to similar particle sizes and placed in seawater and artificial seawater (GP2 Medium). Alkalinity and pH values of the artificial seawater decreased substantially over 24 h when in contact with coral and oyster shell; the effects in seawater were minor. Once alkalinity has been reduced, the maintenance of stable pH at values typical of seawater is made more difficult. The data, which are preliminary, have practical application.     

Integrating in situ quantitative geographic information tools and size‐specific,laboratory‐based growth zones in a dynamic river‐mouth estuary

• 1. The ultimate determination of coastal habitat suitability requires the integration of both dynamic (i.e. water mass characteristics) and stationary (structural) habitats. An approach using real‐time streamed data collection, remote sensing, and GIS modelling to compare and contrast seasonal and spatial patterns in these habitat components of the eastern and western distributaries of the lower Pascagoula River estuary is described.
• 2. Structural and dynamic habitat characteristics are described using GIS and integrated with published growth data on juvenile mullet (Mugil spp.) and spot (Leiostomus xanthurus) to reveal zones of accelerated growth. Both mullet and spot had their greatest growth when water temperature and salinity (dynamic habitat) were physiologically optimal. The lack of spatial difference in the dynamic habitat between distributaries resulted in no growth zone differences for both species.
• 3. The integration of the growth zones with the structural habitat component showed that the west distributary, with its greater availability and reduced fragmentation of main channel marsh edge, should provide a greater area of essential fish habitat than the east distributary for juvenile spot, a marsh‐edge associate. Because juvenile mullet are less associated with structural wetland habitat, growth zones and the stationary (structural) habitat were not integrated.
• 4. The approach of integrating real‐time geo‐referenced water quality data with regional fish growth‐rate data is an important step towards a quantitative understanding of the hierarchical nature and inherent variability of dynamic coastal environments. The use of this holistic approach should lead to more effective management of estuarine systems, especially in regard to potential impacts within the estuary's watershed and to its coupling with offshore environments.

Copyright © 2007 John Wiley & Sons, Ltd.     

A seasonal survey of surface water habitats within the River Spey basin,Scotland: major nutrient properties

• 1. Current monitoring strategies of governmental organizations tend to be focused on relatively large flowing and standing waters, and until recently those polluted by point sources. Consequently areas of high conservation interest tend to be understudied, and defining reference conditions, as required by current legislation, is difficult to achieve.
• 2. In order to address this imbalance, water samples have been collected and analysed once in each of four seasons during 2003 from 72 locations within a 100 km² area of the oligotrophic River Spey catchment in NE Scotland. The sampling design included examples of running water (headwater streams and the main rivers) and standing water (lochs, lochans, pools, ditches, backwaters, bogs). Altitude ranged from 220 to 980 m and incorporated a climatic regime from cool temperate to sub‐alpine. Each sampling campaign targeted low‐flow conditions to evaluate steady‐state nutrient concentrations.
• 3. Concentrations of the major soluble nutrients nitrogen and phosphorus demonstrated high spatial and temporal variability, with soluble organic and molybdate unreactive forms generally being dominant. Concentrations of ammonium‐N, nitrate‐N and soluble reactive phosphorus were extremely small, with 50% of samples falling below 8, 5 and 1 µg L^?1, respectively, during spring and summer.
• 4. Sampling sites were grouped either by water‐body type or by the properties of their immediate biophysical zone. Together these two groupings explained 33–38% of the variance in water chemistry. Certain changes were detectable across most habitats and biophysical zones.
• 5. A decline in the concentration of nitrate that occurred in reaches downstream from certain headwater streams draining the mountain areas indicated the potential for its within‐stream utilization. Inorganic N dynamics differed between small streams and large rivers.
• 6. Landscape‐scale patterns were recorded in spring and summer nutrient availability with inorganic N and P thresholds (arbitrarily defined) of 10 and 1 µg L^?1, respectively.

Copyright © 2006 John Wiley & Sons, Ltd.     

Sowing time and direct seeding success of native tree species for restoring tropical forest ecosystems in northern Thailand

New Forests - Direct seeding (sowing seeds directly into ground) is potentially a cost-effective method of forest restoration that could replace or complement conventional tree planting, under...