Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella

Horizontal gene transfer plays a major role in microbial evolution. However, newly acquired sequences can decrease fitness unless integrated into preexisting regulatory networks. We found that the histone-like nucleoid structuring protein (H-NS) selectively silences horizontally acquired genes by targeting sequences with GC content lower than the resident genome. Mutations in hns are lethal in Salmonella unless accompanied by compensatory mutations in other regulatory loci. Thus, H-NS provides a previously unrecognized mechanism of bacterial defense against foreign DNA, enabling the acquisition of DNA from exogenous sources while avoiding detrimental consequences from unregulated expression of newly acquired genes. Characteristic GC/AT ratios of bacterial genomes may facilitate discrimination between a cell's own DNA and foreign DNA.     

Commuting distances to local non‐farm workplaces and out‐migration: The case of Northeast Thailand

The relationship between commuting distances and where people work has been studied for urban contexts in both developed countries and developing countries. However, few studies have examined the situation in rural areas, and none look at commuting distances to non‐farm workplaces in rural areas of developing countries. This paper investigates how commuting distance, and thus accessibility, to local non‐farm work influences non‐farm employment and out‐migration from rural villages in Northeast Thailand. The main issues examined are: (i) the distance that rural residents travel to work in local non‐farm jobs; and (ii) the influence that local non‐farm employment has on the number of outmigrants from rural villages. The study finds: (i) distance between villages and non‐farm work sites impact the number of villagers who are employed in regular wage work; (ii) beyond 20 km villagers are less likely to travel to non‐farm employment using their own means of transportation; and (iii) employment in regular wage work decreases outmigration. The findings from this study contribute to the debates over the drivers of rural out‐migration, rural livelihood changes, and agrarian changes that are taking place in Southeast Asia.     

Carbonate mineral filtrants with new surfaces reduce alkalinity in seawater and artificial seawater: Preliminary findings

Silica sand (silica), coral (aragonite), and oyster shell (calcite) were ground to similar particle sizes and placed in seawater and artificial seawater (GP2 Medium). Alkalinity and pH values of the artificial seawater decreased substantially over 24 h when in contact with coral and oyster shell; the effects in seawater were minor. Once alkalinity has been reduced, the maintenance of stable pH at values typical of seawater is made more difficult. The data, which are preliminary, have practical application.     

Some effects of off-road vehicles and sheep grazing on lizard populations in the mojave desert

The effects of two environmentally disruptive activities were determined using the numbers and biomass of lizards. Sheep grazing reduces ground cover necessary for some lizard species. The use of vehicles on the desert also eliminates vegetation and adversely affects lizard populations.     

Micromorphology of soils in soliflucted materials,Okstindan, Northern Norway

The micromorphology of two soil profiles developed on turf-banked solifluction lobes and a third profile formed on a larger turf-banked solifluction terrace is described. Four elements common to the three profiles are identified.In the horizontal plane the apparent long axes of detrital grains show preferred orientation parallel to the azimuth of the line of greatest slope, and in slides cut in the vertical plane aligned with the slope direction a somewhat stronger preferred orientation (or apparent dip of the grains) is observed parallel, or sub-parallel to the ground surface gradient. Secondly, coatings of matrix material are observed on the upper surfaces of detrital grains at depths greater than 50 cm. Above this depth similar coatings also appear on the sides and lower surfaces of detrital grains. Roughly horizontal flattened patches of matrix enrichment are also observed in the three profiles. These become more frequent with depth, producing a banded pattern of matrix concentrations separated by detrital grains. Finally, large rounded pores, or vesicles, are observed in the upper 25 cm of the three profiles.These micromorphological elements are described, and suggestions are made as to their origins.     

Efficacy of Netminder® silicone release coating for biofouling reduction in bay scallop grow‐out and comparative effects on scallop survival,growth and reproduction

Netminder^®, a water‐based silicone barrier release coating, was highly effective in reducing biofouling of lantern nets during grow‐out/overwintering of bay scallops, Argopecten irradians irradians, in a large‐scale restoration programme in New York, USA. Compared with untreated nets, scallops held in Netminder^®‐coated nets experienced reduced survival after 8 months, probably due to higher loads of epibionts on their shells. However, this was countered by higher reproductive and overall condition of scallops in treated vs. untreated nets; there were no consistent differences in shell growth in different net treatments. Although further testing is recommended under a wider range of conditions, we conclude that for the purposes of our scallop restoration work, coating nets with Netminder^® would eliminate the need for a gear change in spring, thus reducing labour costs; the coating process should be refined so that Velcro closures of nets do not become sealed shut.     

Effect of ammonia on the growth rate and oxygen consumption of juvenile greenlip abalone, Haliotis laevigata Donovan

Juvenile greenlip abalone, Haliotis laevigata, (mean whole weight 4.48±1.9 g, mean±s.d., n=953) were highly sensitive to ammonia as indicated by depressed growth rate and food consumption measured over 2–3 months in bioassay tanks. For growth rate expressed on a whole weight basis, the EC₅ and EC₅₀ values (5 and 50% growth reductions) were 0.041 mg FAN l⁻¹ (Free Ammonia–Nitrogen) and 0.158 mg FAN l⁻¹, respectively. Shell growth rates declined over the entire experimental range (0.006–0.188 mg FAN l⁻¹). At the end of the bioassay, groups of abalone were transferred to respiratory chambers. Oxygen consumption rate increased to a maximum of 188% of control values at 0.235 mg FAN l⁻¹ and decreased slightly at the highest concentration of 0.418 mg FAN l⁻¹.     

Defining the immune response to Ehrlichia species using murine models

Pathogenic bacteria belonging to the family Anaplasmataceae include species of the genera Ehrlichia and Anaplasma. Ehrlichia chaffeensis, first known as the causative agent of human monocytic ehrlichiosis, also infects several vertebrate hosts including white-tailed deer, dogs, coyotes and goats. E. chaffeensis is transmitted from the bite of an infected hard tick, such as Amblyomma americanum. E. chaffeensis and other tick-transmitted pathogens have adapted to both the tick and vertebrate host cell environments. Although E. chaffeensis persists in both vertebrate and tick hosts for long periods of time, little is known about that process. Immunological studies will be valuable in assessing how the pathogen persists in nature in both vertebrate and invertebrate hosts. Understanding the host immune response to the pathogen originating from dual host backgrounds is also important to develop effective methods of diagnosis, control and treatment. In this paper, we provide our perspective of the current understanding of the immune response against E. chaffeensis in relation to other related Anaplasmataceae pathogens.