Design and Implementation of the ZH/EN Bilingual Retrieval System Based on the CAT/AGROVOC Mapping

For the users' convenience of accessing the AGRIS resources quickly and using them fully,the paper decomposes the structure of AGRIS Search net,analyzes the users' requirement met for conducting a bili...     

Genomic features of Pseudomonas sp. RGM2144 correlates with increased survival of rainbow trout infected by Flavobacterium psychrophilum

This study evaluated the probiotic potential of the biofilm formed by the strain Pseudomonas sp. RGM2144 on rainbow trout survival. When challenged with the fish pathogen Flavobacterium psychrophilum, Pseudomonas sp. RGM2144 increased rainbow trout survival to 92.7 ± 1.2% (control: 35.3 ± 9.5%, p < .0001). The draft genome of Pseudomonas sp. RGM2144 is 6.8 Mbp long, with a completeness 100% and a contamination of 0.4%. The genome contains 6122 protein-coding genes of which 3564 (~60%) have known functions. The genome and phylogeny indicate that Pseudomonas sp. RGM2144 is a new species in the Pseudomonas genus, with few virulence factors, plasmids, and genes associated with antimicrobial resistance, suggesting a non-pathogenic bacterium with protective potential. In addition, the genome encodes for 11 secondary metabolite biosynthetic gene clusters that could be involved in the inhibition of F. psychrophilum. We suggest that Pseudomonas sp. RGM2144 may be applied as a probiotic in salmonid fish farming.     

Mammalian browsing impact on regenerating <Emphasis Type="Italic">Eucalyptus</Emphasis> seedlings in a large commercially managed native forest estate

Excessive browsing by herbivorous mammals can adversely effect both forestry operations and ecosystem structure and function, and effective management of the problem across large forest estates requires the spatial extent of browsing impact to be determined. We conducted a browsing impact survey within 1.3 million ha of commercially managed Eucalyptus forest, and hypothesised that browsing impact would be related to variables reflecting habitat suitability for a major browsing species, the swamp wallaby (Wallabia bicolor Desmarest), at both large and small spatial scales. A simple spatial analysis showed that browsing severity varied across the landscape, but was high in a number of districts (30,000–100,000 ha land management units) grouped in a similar part of the surveyed area, identifying this region as a focus for management and research. Ordinal logistic regression showed that browsing impact was related to (a) the location of districts and (b) the number of times post-harvest regeneration had been attempted, with browsing impact generally worse in areas where regeneration had occurred twice. The latter result was consistent with our original hypothesis, as multiple regeneration attempts promote high quality habitat patches for wallabies. In most heavily browsed districts browsing severity varied substantially between harvested sites, suggesting that processes operating at the site scale were important. Our results describe the spatial extent of browsing within the surveyed area, and identify high risk localities and states, but additional data are required to understand the processes regulating browsing impact.     

Toxicity of emamectin benzoate to Cydia pomonella (L.) and Cydia molesta (Busck) (Lepidoptera: Tortricidae): laboratory and field tests

BACKGROUND: Emamectin benzoate is a novel macrocyclic lactone insecticide derived from naturally occurring avermectin molecules isolated by fermentation from the soil microorganism Streptomyces avermitilis Kim & Goodfellow. The present study aims to evaluate the toxicity of emamectin benzoate to codling moth, Cydia pomonella (L.), and oriental fruit moth, C. molesta (Busck), under laboratory and semi‐field conditions. RESULTS: Dose response bioassays showed that emamectin benzoate had a high level of intrinsic toxicity to early‐stage larvae of both species, and that contact activity might contribute significantly to mortality. In the semi‐field trials, residual toxicity lasted for more than 1 week. Ovicidal activity was recorded only for C. pomonella (approximately 30%), irrespective of the concentrations tested. Field trials confirmed the efficacy of emamectin benzoate on codling moth when applied at 7 day intervals. Fruit damage, both from the first and second generations, was comparable with that on treatment with chlorpyrifos‐ethyl, used as a chemical reference. CONCLUSION: Emamectin benzoate may be considered a valuable tool for the control of codling moth as a component of an IPM programme. Its collective advantages are: high efficacy, lack of cross‐resistance with currently used products, control of secondary pests such as oriental fruit moth and selective toxicity that spares beneficials. Copyright © 2008 Society of Chemical Industry     

Molecular characterization and glomalin production of arbuscular mycorrhizal fungi colonizing a heavy metal polluted ash disposal island, downtown Venice

In this work the arbuscular mycorrhizal (AM) fungal communities colonizing a polluted ash dump island, downtown Venice, were studied by using a multimodal approach. The island, Sacca San Biagio, was covered with a thick layer of municipal solid waste residues produced by an incinerator operating from 1973, to 1984. Such residues contained high levels of heavy metals (Cu, Pb and Zn). We characterized the AMF communities present in soils on Sacca San Biagio island by using molecular methods. Nine AM fungal sequence types were detected in the roots of three plant species, representative of the dominant flora, by using partial SSU ribosomal RNA genes. The most abundant sequence types corresponded to Glomus intraradices/Glomus fasciculatum, and to Glo18, a sequence detected so far only in planta. Two sequences were new to science. Glomalin-related soil protein (GRSP), extracted from rhizosphere soil of dominant plant species, ranged from 1.6 to 2.3 mg g⁻¹. The occurrence of an active AM fungal community able to live in such harsh environment was evinced by the correlation between mycorrhizal colonization and GRSP content.     

Field measurement of net nitrogen mineralization of manured soil cropped to maize

We evaluated the in situ net nitrogen (N) mineralization in a soil cropped to maize and fertilized for 11 years with cattle slurry or farmyard manure, both common on livestock farms of the Po River valley in Northern Italy. The net N mineralization of the tilled soil layer was measured in six consecutive incubation periods after manure application, for a total of 12 weeks, using the polyethylene buried bags technique. Results showed that net N mineralization was followed by N immobilization and finally, by mineralization whose rate increase until maize flowering. On average, net N mineralization was 70.4 kg N ha⁻¹, with the majority being released during the last measurement period. The time and extent of net N mineralization and plant N uptakes were not affected by fresh manure application. Instead, the effect of past management increased the maximum net N mineralization rate obtained with farmyard manure. The buried bag technique probably underestimates the total amount of mineralized N available for crop growth because it excludes the presence of the plant.     

Preliminary Structure-Activity Relationship on Theonellasterol, a New Chemotype of FXR Antagonist, from the Marine Sponge Theonella swinhoei

Using theonellasterol as a novel FXR antagonist hit, we prepared a series of semi-synthetic derivatives in order to gain insight into the structural requirements for exhibiting antagonistic activity. These derivatives are characterized by modification at the exocyclic carbon-carbon double bond at C-4 and at the hydroxyl group at C-3 and were prepared from theonellasterol using simple reactions. Pharmacological investigation showed that the introduction of a hydroxyl group at C-4 as well as the oxidation at C-3 with or without concomitant modification at the exomethylene functionality preserve the ability of theonellasterol to inhibit FXR transactivation caused by CDCA. Docking analysis showed that the placement of these molecules in the FXR-LBD is well stabilized when on ring A functional groups, able to form hydrogen bonds and π interactions, are present.     

Evaluation of a phenological model for strategic decisions for hemp (Cannabis Sativa L.) biomass production across European sites

The optimal combination of yield and quality of hemp fibres from field grown crops is around flowering. Therefore prediction of flowering time would support in planning production and optimization of the cultivar choice for different agro-ecological zones. In the current paper the validation of a recently published model (Amaducci et al., 2008a) is carried out for four varieties across a wide range of sites and thus of air temperature-photoperiod combinations. The model was evaluated by comparing its output to field observations of the duration between emergence and 50% flowering. The model output and observed times from emergence to 50% of flowering generally corresponded well, but some discrepancies were apparent. The biggest discrepancies between estimates and actual data were observed at extreme latitudes. The level of accuracy of the model predictions is satisfactory for strategic decision regarding sowing and harvesting time and cultivar choice, but tactical decisions (e.g. time of harvest based on flowering time) cannot be accurately supported.     

Composition of peptide mixtures derived from simulated gastrointestinal digestion of prolamins from different wheat varieties

Gliadin content of wheat is highly variable, both qualitatively and quantitatively, in function of the plant genetic and of the growing conditions. The gliadins are among the major triggers of celiac disease: peptides derived from the gastrointestinal digestion of these proteins and absorbed from the lamina propria cause the immunological reactions that damage the villous structure in affected subjects. In the present work, the peptide mixtures generated by simulated gastrointestinal digestion of the prolamin fraction extracted from different wheat varieties (Triticum turgidum subsp. durum and Triticum aestivum) were characterized by LC/MS and LC-MS/MS techniques. Peptides related to the amount of α-gliadin, as well as toxic and immunogenic peptides for celiac patients have been identified and quantified using an isotopically labeled internal standard. The quantification demonstrated strong differences among the varieties tested. Some samples, belonging to the same varieties and/or cultivation area, showed a lower α-gliadin content, and a smaller amount of toxic and immunogenic peptides.