In vitro fermentation of alternansucrase raffinose-derived oligosaccharides by human gut bacteria

In this work, in vitro fermentation of alternansucrase raffinose-derived oligosaccharides, previously fractionated according to their degree of polymerization (DP; from DP4 to DP10), was carried out using small-scale pH-controlled batch cultures at 37 °C under anaerobic conditions with human feces. Bifidogenic activity of oligosaccharides with DP4-6 similar to that of lactulose was observed; however, in general, a significant growth of lactic acid bacteria Bacteroides , Atopobium cluster, and Clostridium histolyticum group was not shown during incubation. Acetic acid was the main short chain fatty acid (SCFA) produced during the fermentation process; the highest levels of this acid were shown by alternansucrase raffinose acceptor pentasaccharides at 10 h (63.11 mM) and heptasaccharides at 24 h (54.71 mM). No significant differences between the gas volume produced by the mixture of raffinose-based oligosaccharides (DP5-DP10) and inulin after 24 h of incubation were detected, whereas lower gas volume was generated by DP4 oligosaccharides. These findings indicate that novel raffinose-derived oligosaccharides (DP4-DP10) could be a new source of prebiotic carbohydrates.     

Studying the function of ecosystem in preventing aeolian dust emission in the dryland areas of China

Aeolian dust emissions can cause many environmental hazards, like accelerating land degradation and desertification, polluting air, harming human health, and so on. The dryland areas of China (DAC) are hot spots of aeolian dust emissions. To date, many efforts have been paid to researching dust emissions processes and effects, but research studies on ecosystems' function in preventing dust emissions are still very limited. In this study, we investigated the function of DAC ecosystems in preventing dust emissions, and the corresponding driving factors through integrated wind erosion modelling system (IWEMS) modelling. The main results indicate that: (1) from 2001 to 2020, the ecosystems of DAC prevented the emission of dust ~40,554 Tg, approximately 15 times as much as the total actual dust emission (~2776 Tg); (2) the function of DAC ecosystems in preventing dust emissions was relatively strong in spring and winter; (3) grassland ecosystems had the strongest function in preventing dust emissions among all the land cover types, avoiding the emission of dust ~20,857 Tg over 2001–2020; (4) dust emission prevention function provided by the DAC ecosystems benefits almost every region of China, which provides a theoretical basis for formulating ecological compensation policies; and (5) the changes in dust emissions were dominated by wind speed in most areas of DAC.     

Evidence of selective burning in Sardinia (Italy): which land-cover classes do wildfires prefer?

The objective of this paper is to identify land-cover types where fire incidence is higher (preferred) or lower (avoided) than expected from a random null model. Fire selectivity may be characterized by the number of fires expected in a given land-cover class and by the mean surface area each fire will burn. These two components of fire pattern are usually independent of each other. For instance, fire number is usually connected with socioeconomic causes whereas fire size is largely controlled by fuel continuity. Therefore, on the basis of available fire history data for Sardinia (Italy) for the period 2000–2004 we analyzed fire selectivity of given land-cover classes keeping both variables separate from each other. The results obtained from analysis of 13,377 fires show that for most land-cover classes fire behaves selectively, with marked preference (or avoidance) in terms of both fire number and fire size. Fire number is higher than expected by chance alone in urban and agricultural areas. In contrast, in forests, grasslands, and shrublands, fire number is lower than expected. In grasslands and shrublands mean fire size is significantly larger than expected from a random null model whereas in urban areas, permanent crops, and heterogeneous agricultural areas there is significant resistance to fire spread. Finally, as concerns mean fire size, in our study area forests and arable land burn in proportion to their availability without any significant tendency toward fire preference or avoidance. The results obtained in this study contribute to fire risk assessment on the landscape scale, indicating that risk of wildfire is closely related to land cover.     

Strain-specific sensitivity estimates of Mycobacterium avium subsp. paratuberculosis culture in Greek sheep and goats

The requirements for the isolation of Mycobacterium avium subsp. paratuberculosis (Map) may be related to the strain-type [sheep (S)- or cattle (C)-type] and not to the host. The objective of this paper was to estimate and compare strain- and biological sample (faeces or pooled-tissue)--specific sensitivities (Ses) of two solid culture media, Herrold's egg yolk medium (HEYM) and Lowenstein-Jensen (LJ) medium, for the isolation of Map from Greek dairy sheep and goats. From 400 faecal samples collected from sub-clinically infected sheep and goats of four flocks and from 214 pooled-tissue samples (142 from sheep and 72 from goats) collected, at the abattoir, from >1-year-old routinely slaughtered animals, with gross pathology suggestive of paratuberculosis, we isolated 34 Map strains. Of those, by the IS1311 PCR, 18 were categorized into the C-type and nine into the S-type; seven were not typed. We used a Bayesian approach to estimate the strain-specific Ses. SeHEYM-C-faecal=17% (95% credible interval: 7, 40) was higher than SeHEYM-S-faecal=2% (0.3, 11). Also, SeHEYM-C-faecal was higher than SeLJ-C-faecal=4% (1, 12). In pooled-tissue samples, the strain-specific Ses did not differ between the two media.     

Spray-drying Microencapsulation of an Extract from Tilia tomentosa Moench Flowers: Physicochemical Characterization and in Vitro Intestinal Activity

Plant Foods for Human Nutrition - Silver linden (Tilia tomentosa Moench, TtM) flowers possess several health-promoting properties, especially at the neurological level, such as intestinal...     

Thinking outside the patch: a multi-species comparison of conceptual models from real-world landscapes

Context

When modeling a species’ distribution, landscapes can alternatively be conceptualized following patch- or gradient-based approaches. However, choosing the most suitable conceptualization is difficult and methods for empirical validation are still lacking.

Objectives

To address the conditions under which a given conceptual model is more suitable, taking into account landscape context and species trait dependency effects. Patch- and gradient-based conceptualizations were built based on two structurally different landscapes: variegated and mosaic. We hypothesize that: (H1) gradient-based models better describe variegated landscapes while patch-based models perform better in mosaic landscapes; and (H2) gradient-based models will fit generalist species better while patch-based models will suit specialists better.

Methods

We modeled the distribution of eleven bird species in each landscape using each conceptualization. We determined the suitability of each conceptual model to fit statistical models by looking for cross-species responses and deviations from best models.

Results

We found no clear support for our hypotheses. Although patch-based models performed better in mosaic landscapes (H1), they also provided useful conceptualizations in variegated landscapes. However, when patches showed high heterogeneity, gradient-based approaches better fit specialist species (H2).

Conclusions

The suitability of a given conceptual model depends on the interaction between species habitat specialization, and the intrinsic spatial heterogeneity of the landscape and the ability of each conceptualization to capture it. Gradient-based models provide better information on resource allocation, while patch-based models offer a simplified perspective on landscape attributes. Future research should consider the nature of both species and landscapes in order to avoid bias from inadequate landscape conceptualizations.

     

Salmonella isolated from individual reptiles and environmental samples from terraria in private households in Sweden

Background

This study investigates Salmonella spp. isolated from privately kept reptiles and from environmental samples such as bedding materials or water from the floor of the enclosures (terraria). It also compares isolation of Salmonella using Modified Semisolid Rappaport-Vassiliadis (MSRV) medium or selective enrichment in Rappaport-Vassiliadis-Soya (RVS) pepton broth. Cloacal swabs or swabs from the cloacal area were collected from 63 individual reptiles belonging to 14 households. All reptiles were from different terraria and from 62 of these, environmental samples were also collected. Sampling were done by the reptile owners according to written instructions and sent by mail immediately after sampling. All but three samples were analyzed within 24 h after collection. Colonies suspected for Salmonella were tested for agglutination and serotyped using the White-Kauffmann-Le Minor scheme. The relative sensitivity (se) and specificity (sp) for MSRV compared with RVS, and the agreement coefficient kappa (κ) were calculated.

Results

Salmonella was isolated from 50/63 (80%) terraria, either from the reptiles (31/63; 49%) or from bedding material (39/62; 63%). The most common subspecies was Salmonella enterica subspecies enterica followed by S. enterica subspecies diarizonae. In reptiles, the most common S. enterica subspecies enterica serovars were Java (n = 4) and Fluntern (n = 4), compared with the serovars Tennessee (n = 10) and Fluntern (n = 10) in the environmental samples. The exact same set of Salmonella subspecies and serovars were not isolated from the individual reptiles and the environmental samples from any of the households. Isolation using MSRV yielded more Salmonella isolates 61/113 (54%) than enrichment in RVS 57/125 (46%). The se was 97.9% (95% Confidence Interval 93.9-100), the sp 78.5% (95% CI 68.5-88.5) and the κ 0.74, indicating substantial agreement between the tests.

Conclusions

Salmonella can be expected to be present in environments where reptiles are kept. This constitutes public health risks and should be considered during handling of the reptiles and during cleaning and disposal of bedding. A combination of different culturing techniques may be used to increase the isolation rate.     

Histology,immunocytochemistry and qRT‐PCR analysis of Atlantic salmon,Salmo salar L., post‐smolts following infection with infectious pancreatic necrosis virus (IPNV)

Infectious pancreatic necrosis (IPN) is a very serious viral disease in terms of its impact on production of Atlantic salmon, Salmo salar L., fry and post‐smolts. Post‐smolts of Atlantic salmon were injected with infectious pancreatic necrosis virus (IPNV) and cohabited with naive fish to produce natural infection. Cohabitant fish were sampled every 2 days, up to day 36 post‐infection (p.i.). From 90 cohabitant fish, 11 (12.2%) were positive by immunohistochemistry (IHC). The first detection of IPNV by IHC occurred on day 16 p.i. which coincided with the onset of mortality in this group. Besides the pancreas, the liver was found to be a key target organ for IPNV. For the first time, the virus was observed in the islets of Langerhans and in the kidney corpuscles of Stannius which suggests that the virus could affect the fish’s metabolism. The liver of two fish, which showed the most widespread presence of IPNV by IHC, had a pathology including focal necrosis and widespread presence of apoptotic hepatocytes, many of which did not stain for virus by IHC. Up‐regulation of cytokine gene expression was found only in the IHC‐positive (IHC+ve) fish and reflected the level of infection as determined by IHC positivity of the liver. In most fish, interferon (IFN), Mx, γIFN and γIP were up‐regulated in liver and kidney, while only IFN and Mx were up‐regulated in gill. IL1β and TNFα were not induced in any tissue. The gill showed variable levels of constitutive expression of IL1β and γIFN. The two fish with liver pathology had the highest level of IFN expression, especially relative to the level of Mx expression, in the liver compared with the other IHC+ve fish which did not have a liver pathology. The results suggest that following widespread infection of hepatocytes, the cells may over‐produce IFN, resulting in apoptosis of neighbouring cells with subsequent death from liver failure.     

Deployment of Sawdust as Substrate Medium in Hydroponically Grown Lettuce

In this study, lettuce plants were grown in sawdust (Saw) and/or perlite (Per) mixtures (sawdust; Saw:Per 75:25%; Saw:Per 50:50%; Saw:Per 25:75%; Perlite) and in Nutrient Film Technique (NFT), in an unheated greenhouse. Plants grown in NFT were taller with greater leaf area resulting in greater fresh weight. Sawdust addition reduced leaf length, leaf area and as a consequence the fresh weight but not the leaf number. However, leaf dry weight increased as sawdust content increased into the substrate. Leaf chlorophyll reduced but leaf fluoresces increased in perlite and NFT. High sawdust content (75% or 100%) reduced photosynthetic rates and stomatal conductance. Nutrient uptake [potassium (K), sodium (Na), phosphorus (P)] was the greatest in NFT treatment, while perlite and Saw:Per 25:75% increased elemental uptake (up to 74%) comparing with the remaining treatments. Leaf elemental analysis fluctuated among treatments. Thus, low content (i.e. 25%) of sawdust in perlite could improve inorganic substrate media properties.     

Freshness and quality criteria of iced farmed Senegalese sole (Solea senegalensis)

Senegalese sole (Solea senegalensis) is a high-value commercial species with increasing importance in aquaculture. The aim of this work was to study the quality changes of this species during chilled storage under refrigeration, through sensory and chemical methods. In particular, the optimization of a quality index method (QIM) scheme was proposed as well as the definition of sensory and chemical quality criteria. A shelf life of 15 days was reported, and a QIM scheme based on a total of 22 demerit points (dp) was proposed. Biogenic amines were never detected, and the usual spoilage indicators, such as TVB-N and TMA-N, were not significantly produced during the period of sensory-acceptable quality (15 days). On the basis of the significant correlations (p<0.001) between sensory data and Ki values, a quality index (QI) 19 dp and a Ki>40% indicate unacceptable quality of iced Senegalese sole.