Simulation modelling of yield losses caused by wheat stem rust

Stem rust, or black rust, of wheat, caused by Puccinia graminis f. sp. tritici, has recently re-emerged in several parts of the world, with epidemics occurring in eastern Africa, as well as northern and southern Europe. Damage mechanisms from disease dynamically affect the physiology of the crop as it grows and develops, and as the epidemic progresses, leading to yield losses in the stem rust-diseased wheat stand. Process-based agrophysiological models that include disease-induced damage mechanisms can help to better understand the physiological processes leading to yield losses, and to inform strategic decisions such as breeding strategies. Such models have not been developed for wheat stem rust so far. Two damage mechanisms for stem rust, light stealing and assimilate diversion, were incorporated in the agrophysiological simulation model WHEATPEST. The model, tested from experimental field data retrieved from the literature, provides a satisfactory representation of the system, although consistently underestimates relative yield losses by about 6.9%, resulting in relative yield losses between 17% and 56%. Analyses highlight the importance of the diversion of assimilates toward the pathogen in the magnitude of yield loss. Considering only the reduction of green leaf area would underestimate damage from stem rust by at least threefold. The analysis also shows the importance of the dynamic interplay between disease and crop growth, especially the dynamics of leaf area, on yield loss. Directions to consider additional damage mechanisms are proposed, and perspectives for future research, especially in relation to plant breeding strategies under climate change, are offered.     

Cross-protection of Salmonella abortusovis, S. choleraesuis, S. dublin and S. gallinarum in mice induced by S. abortusovis and S. gallinarum: bacteriology and humoral immune response

Cross-protection induced by primary infection with Abortusovis and Gallinarum was examined against challenge injection with these Salmonella serotypes as well as with Dublin and Choleraesuis, the other virulent serotypes. Abortusovis induced efficient protection against the other Salmonella. Gallinarum was ineffective against Choleraesuis. Even with low multiplication in mice, the Gallinarum J91 strain induced a weak but significant protection against Dublin (same O group serotype). The antibodies in the blood of mice were tested with ELISA specific for the Salmonella antigens used to prime or to challenge animals. The Gallinarum J91 strain was detected to be more antigenic in ELISA than the other Salmonella antigens. It is difficult to conclude on a correlation between IgM or IgG antibodies and induction of protection, because of the variability in immune response according to the different serotype used. Nevertheless, the negative linkage between a number of bacteria in the spleen of mice challenged with Gallinarum and Dublin, and the level of IgM and IgG antibodies specific for the challenging serotype, showed that humoral immune response could be one element of cross-protection, mainly by the immune response against the same O serotype.     

Soil Covers for Controlling Acid Generation in Mine Tailings: a Laboratory Evaluation of the Physics and Geochemistry

To evaluate the effectiveness of soil covers, column experiments were conducted on tailings protected by a three-layer soil cover and tailings directly exposed in the open laboratory for a period of 760 days. Periodic rain application was performed to simulate field conditions, and at four times during the experiments the pore water was completely flushed out of each column for analysis. Profiles of oxygen, temperature, and volumetric water content were measured throughout the experiment, and the post-testing pore water quality was also characterized. A one-dimensional semi-analytic diffusion model was used to simulate oxygen profiles in the uncovered tailings. Modelling performed using the geochemical code MINTEQ showed that in the laboratory, aluminium concentrations in the tailings pore water were controlled by Al(OH)SO₄, sulphate by gypsum and Al(OH)SO₄and iron by lepidocrocite in the upper half and by ferrihydrite in the lower half. In the field, however, the iron oxyhydroxide minerals formed in the oxidized zone appear to be dissolving. It was found that the cover was effective in preventing significant desaturation of the clay, even over a 150-day drying period. The covered tailings did not oxidize much during the experiments. In the uncovered tailings, oxygen modelling and examination of the geochemistry show that the rate of gross oxidation and the advancement of the oxidation front decreases with time. However, pore water quality is controlled by geochemical processes other than oxidation, as reported in the field.     

Suitability of two laboratory testing methods to evaluate the side effects of pesticides on Typhlodromus pyri Scheuten (Acari: Phytoseiidae)

BACKGROUND: Laboratory results of the French ANPP/CEB guideline No. 167 and IOBC/WPRS Ring Testing Group methods for testing the side effects of pesticides on the predatory mite Typhlodromus pyri Scheuten were compared with respect to their suitability to evaluate the toxicity of three pesticides. RESULTS: Results obtained with the ANPP/CEB guideline allow the demonstration of significant differences between two slightly toxic products, a dichlofluanid 500 g kg(-1) kWP (Euparen) 50WP) and a quinoxyfen 250 g L(-1) SCC (Legend), and a highly toxic cymoxanil 60/mancozeb 200/folpet 275 g kg(-1) WP [Remiltine F Pepite) (RFP)], on the basis of bioassays conducted in the laboratory. In contrast, results obtained with the IOBC/WPRS method classified all three as harmful.CONCLUSION: The evaluation of the toxicity of RFP revealed that the concentration, the quantity of the wet deposit and the food source used in the IOBC/WPRS method maximise the toxicity, in comparison with those used in the ANPP/CEB protocol. Valid criteria in controls were all respected in the ANPP/CEB tests but not in the IOBC/WPRS samples. This result revealed difficulties related to the use of the IOBC/WPRS method in laboratories.     

<Emphasis Type="Italic">In planta</Emphasis> PCR-based detection of early infection of plant-parasitic nematodes in the roots: a step towards the understanding of infection and plant defence

The polyphagous obligate parasites Meloidogyne spp. devastate a wide range of crop plants including bananas and plantains. Their infestations impact agriculture worldwide. Therefore, an effective combating regime against this nematode species and an in-depth understanding of plant-nematode interaction are essential. Early detection of infection by visual inspection is not possible. This hampers early control strategy efforts and makes in-depth research of the early infection and plant defence unfeasible. A simple and robust in planta PCR-based nematode detection method is described here as the first crucial step. This PCR-based detection assay exploits the existence of the Internal Transcribed Spacer 1 (ITS 1) region of the ribosomal DNA (rDNA) gene family in the nematodes for early detection of nematode penetration into the roots. The results demonstrate that this detection assay is suitable to serve as a molecular screening tool for plant root diagnostic purposes.     

Biochemical characterization of an antigenic saline extract of Actinobacillus pleuropneumoniae serotype 5 and identification of a serotype-specific antigen for ELISA serodiagnosis.

A saline extract of boiled-formalinized whole cells from a local strain (81–750; Quebec, Canada) of Actinobacillus pleuropneumoniae, serotype 5b was used as an antigen in an enzyme-linked immunosorbent assay (ELISA) for serodiagnosis of swine pleuropneumonia. Characterization of this crude extract was done and proteins, neutral sugars, hexosamines, and 2-keto-3-deoxyoctonate (KDO) were evaluated. On phenol extraction of the crude extract a serotype-specific antigen of polysaccharidic nature was recovered from the aqueous phase. This antigen was characterized using sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) with Coomassie blue, silver and Schiff stainings. Immunoblots were done using sera of experimentally infected pigs that showed serotype specificity and cross-reactivity. Overall, the results indicate that the O-chain of lipopolysaccharides is a specific antigen that could be used in ELISA for the serodiagnosis of serotype 5 of A. pleuropneumoniae.     

A review of pest surveillance techniques for detecting quarantine pests in Europe

This paper provides reviews of the most commonly used methods to detect plant pests belonging to groups of invasive organisms with high economic relevance, including Coleoptera (bark beetles, flathead borers, leaf beetles, longhorn beetles, weevils), Diptera (cone and seed flies, fruit flies), Homoptera (aphids, leafhoppers and psyllids, whiteflies), Lepidoptera (moths and butterflies), Thysanoptera (thrips), bacteria (potato brown rot Ralstonia solanacearum) and fungi (pitch canker disease Gibberella circinata, brown rot disease Monilinia fructicola). Future perspectives in detection methods are discussed, with particular reference to the considerable increase in the volume, commodity type and origins of trade in plant material from third countries, the introduction of new crops, the continuous expansion of the EU with new border countries being added, and the impact of climate change affecting the geographical boundaries of pests and their vectors.     

DFT study of quercetin activated forms involved in antiradical, antioxidant, and prooxidant biological processes

Quercetin, one of the most representative flavonoid compounds, is involved in antiradical, antioxidant, and prooxidant biological processes. Despite a constant increase of knowledge on both positive and negative activities of quercetin, it is unclear which activated form (quinone, semiquinone, or deprotonated) actually plays a role in each of these processes. Structural, electronic, and energetic characteristics of quercetin, as well as the influence of a copper ion on all of these parameters, are studied by means of quantum chemical electronic structure calculations. Introduction of thermodynamic cycles together with the role of coreactive compounds, such as reactive oxygen species, gives a glimpse of the most probable reaction schemes. Such a theoretical approach provides another hint to clarify which reaction is likely to occur within the broad range of quercetin biological activities.