Swedish coffee (Astragalus boeticus L.), a neglected coffee substitute with a past and a potential future

Swedish coffee (Astragalus boeticus) seeds have been used as a coffee substitute, in particular during the nineteenth century and in times of scarcity. A. boeticus is found in the wild in a wide range of environments in the Mediterranean and Middle Eastern regions and is able to grow in areas with low and irregular rainfall. It is well-adapted to cultivated and disturbed environments, has indehiscent pods and high yield potential, and is therefore pre-adapted to cultivation and domestication. Swedish coffee is an annual that flowers in spring and produces small (3–6 mm × 3–5 mm) kidney-shaped seeds that can be harvested in summer. The genetic diversity of the species has not been studied, but evidence (wide range of environments, insect pollination) suggests that considerable diversity exists in the species. The genetic resources of Swedish coffee conserved in germplasm banks are very limited, with only 49 accessions conserved in six genebanks. Although no cultivated varieties exist at present and no breeding studies are underway, evidence suggests that limited breeding could result in considerable genetic advances. The cultivation of A. boeticus was very important during the nineteenth century in several countries of Europe, in particular in Sweden, where the cultivation was promoted as a coffee substitute by the monarchy. Several reports exist on its cultivation in several countries of Northern, Central and Southern Europe during the nineteenth century and beginning of the twentieth century. However, its cultivation gradually lost importance and was eventually abandoned. Swedish coffee can be grown in different types of soils as a regular winter or spring legume crop, and thanks to symbiosis with rhizobia may be able to perform well with reduced N fertilization. Several historical accounts report an excellent quality of the coffee substitute prepared with roasted Swedish coffee seeds. However, no investigations have been carried out to study the process of roasting and its influence on the final quality. The information presented here indicates that limited efforts in A. boeticus breeding, cultivation, and industrial processing potentially might result in the recovery of this neglected coffee substitute.     

Thermostability of oxytetracycline, tetracycline, and doxycycline at ultrahigh temperatures

The thermostability parameters of three tetracycline antibiotics at high and ultrahigh temperatures (110-140 degrees C) as well as the influence of treatment medium pH and water activity on their thermotolerance have been investigated. The thermal degradation of the three antibiotics followed a first-order reaction kinetic within the 1.5-2 log(10) cycles investigated. A linear relationship was observed between the log of the DT values and the treatment temperature. The temperature dependence of the DT values was similar for the three molecules (z=28+/-2 degrees C). DT values of doxycycline were approximately 1.5 and 3 times higher than those of tetracycline and oxytetracycline, respectively. Changes in the treatment medium pH (7.0-4.0) and water activity (0.99-0.93) scarcely varied the antibiotics' thermal stability. Only when doxycycline was heat-treated at pH 4.0 did its thermal resistance increase by 3 times. The thermostability parameters obtained would allow the effect of different cooking and sterilization procedures to be estimated. Whereas low-temperature-long-time treatments (conventional sterilization) would destroy >98% of the initial concentration of the residues of the three antibiotics, high-temperature-short-time treatments (UHT) would leave unaltered residues in the 50-90% range.     

Chimpanzee reservoirs of pandemic and nonpandemic HIV-1

Human immunodeficiency virus type 1 (HIV-1), the cause of human acquired immunodeficiency syndrome (AIDS), is a zoonotic infection of staggering proportions and social impact. Yet uncertainty persists regarding its natural reservoir. The virus most closely related to HIV-1 is a simian immunodeficiency virus (SIV) thus far identified only in captive members of the chimpanzee subspecies Pan troglodytes troglodytes. Here we report the detection of SIVcpz antibodies and nucleic acids in fecal samples from wild-living P. t. troglodytes apes in southern Cameroon, where prevalence rates in some communities reached 29 to 35%. By sequence analysis of endemic SIVcpz strains, we could trace the origins of pandemic (group M) and nonpandemic (group N) HIV-1 to distinct, geographically isolated chimpanzee communities. These findings establish P. t. troglodytes as a natural reservoir of HIV-1.     

A framework for results‐based management in fisheries

We present a framework for results‐based management (RBM) of commercial fisheries. The core idea of RBM is to reduce micromanagement by delegating management responsibility to resource users. The RBM framework represents an industrial organization approach to co‐management and comprises three defining processes, conducted by three independent “agents”: (i) an “authority” defines specific and measurable and achievable objectives (outcome targets, OTs) for the utilization of fisheries resources, (ii) resource user organizations (termed “operators”) take responsibility for achieving these OTs and provide documentation that (iii) allows independent “auditors” to evaluate the achievement of OTs. Using incentive mechanisms, notably deregulation, RBM grants operators the flexibility to develop and implement innovative and cost‐effective ways to achieve OTs. The feasibility of implementing RBM in five European fisheries was investigated in cooperation with relevant stakeholders through artificial planning processes and computer simulations. The operators involved were enthusiastic, and new management plans were drafted based on the framework. These included socioeconomic OTs in addition to traditional stock objectives, encompassing an ecosystem approach. Several issues are in need of further research to consolidate the approach and prepare the ground for practical implementation, including: the specification of the legal and regulatory framework required to underpin RBM, details of transitional arrangements when shifting towards RBM (including cost‐sharing) and the development of necessary organizational capacity for operators. Initially, we therefore envisage the framework being applied to high‐value single‐species fisheries, with a limited number of participants, which are adequately represented by a competent organization.     

Phylotype and sequevar variability of Ralstonia solanacearum in Brazil,an ancient centre of diversity of the pathogen

The β‐proteobacterium Ralstonia solanacearum causes bacterial wilt of many plant species. Knowledge of phylotype and sequevar variability in populations of this microorganism is useful for implementing control measures, particularly host resistance. To this end, 301 isolates of R. solanacearum were collected from different geographic regions and hosts in Brazil. Their phylotype and sequevar characterization was used to determine the amount and distribution of phenetic and phylogenetic variability. Isolates were classified into phylotypes I (n = 48), clade 1; and phylotype II, clades 2–5. Phylotype II was divided into subclusters IIA (n = 112) and IIB (n = 141). Phylotype II was widely distributed, whereas phylotype I isolates were found in Central, Northern, and Northeastern regions of Brazil. There were 108 haplotypes identified among endoglucanase (egl) gene sequences from 301 isolates and 32 haplotypes among DNA repair (mutS) gene regions from 176 isolates. The egl and mutS sequence analyses identified eight known (1, 4, 7, 18, 27, 28, 41 and 50) and four new (54, 55, 56 and 57) sequevars. Phylotype IIB showed high diversity in sequevars and host range. Multiplex PCR, using primers specific to the Moko ecotype, characterized banana and long pepper isolates as sequevar 4 and 4/NPB, respectively. This constitutes the first report of the emergent ecotype IIB/4NPB in a new host, long pepper. The majority of sequevars were associated with geographic regions. This high variability of R. solanacearum in Brazil suggests use of host resistance to control bacterial wilt should be mainly focused by region.     

Quantitative trait loci associated with trichomes in the <Emphasis Type="Italic">Solanum galapagense</Emphasis> accession LA1401

Pest resistance in Solanum galapagense has been associated with the presence of type IV glandular trichomes and allelochemicals. Knowledge of the genetic factors involved in determining the presence and type of trichomes may assist in the process of gene introgression for development of pest resistant tomato cultivars. In this study, we sought to identify QTLs associated with the presence of type IV trichomes in an F₂ population derived from the interspecific cross of Solanum lycopersicum TOM-684?×?S. galapagense accession LA1401. Two QTLs contributing to type IV trichome occurrence and density were detected, one major QTL (gal.IV-2), responsible for 35.22% of phenotypic variation, was located on chromosome 2. The other QTL (gal.IV-3) was located on chromosome 3, and explained 23.35% of the phenotypic variation in the F₂ population. These QTLs were responsible for 26.44 and 3.37% of the variation observed in a progeny derived from a backcross to TOM-684. The same QTLs were also associated with type II?+?III non-glandular trichomes, whose densities were negatively correlated to those of type IV trichomes, suggesting that the loci found may have pleiotropic effects for high type IV/low type II?+?III trichome densities. Our results indicate that the inheritance for type IV trichomes can be explained by a few genetic factors affecting the presence of a gland and the density of trichomes. These results further suggest a revision to trichome classification used for tomato may be appropriate.     

Premature losses of leaf area in response to drought and insect herbivory through a leaf lifespan gradientOA

Implications of the differences in leaf life span are still subject to debate in the field of ecophysiology. Since leaf traits associated with these differences may be decisive for determining the distribution of tree species, this topic is particularly relevant in the context of climate change. This study analyzes the effects of the differences in leaf life span on premature losses of leaf area owing to insect herbivory and to abiotic stress. Loss of leaf area may be an important determinant of...