Operational interactions between South American sea lions and gillnet fishing in southern Brazil

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Molecular characterization of a compost and its water-soluble fractions

A sequential chemical fractionation was applied to a compost, with its dissolved organic matter (DOM) extracted in water and separated in hydrophilic (HiDOM) and hydrophobic (HoDOM) components and a water extract, following oxidation of compost suspension with an oxygen flux (TEA). The components sequentially isolated by mild extractions and hydrolyses as structurally unbound (SU), weakly bound (WB), and strongly bound (SB) to the matrix of the bulk compost and its water-soluble fractions were identified in their molecular structure. The bulk compost was rich with components derived from both aromatic (phenolic compounds) and aliphatic (long-chain fatty acids, hydroxy acids, diacids, and alcohols) structures of suberins, whereas components derived from cutins were especially extracted from TEA, HoDOM, and HiDOM. The TEA sample also yielded a significant amount of oxidized products that was dominated by dehydroabietic acids. The fractionation sequence highlighted the different intermolecular interactions that bound the isolated molecular components to the compost complex matrix. While a significant part of the bulk compost was still present as a solid residue at the end of the sequential fractionation, all water-soluble fractions were almost completely hydrolyzed. These results indicate that the water-soluble components of compost may be readily separated from the compost matrix and contribute to the environmental dynamics of natural organic matter.     

Vessel noise pollution as a human threat to fish: assessment of the stress response in gilthead sea bream (<Emphasis Type="Italic">Sparus aurata</Emphasis>, Linnaeus 1758)

This study examined the effects of boat noise pollution on the stress indices of gilthead sea bream (Sparus aurata, Linnaeus 1758). To assess the stress response in these fish, biometric values and plasma parameters such as ACTH, cortisol, glucose, lactate, haematocrit, Hsp70, total protein, cholesterol, triglycerides and osmolarity were analysed. After acclimatization of the animals, the experiment was carried out in a tank fitted with underwater speakers where the fish were exposed to sound treatments (in duplicate) consisting of: 10 days of no sound (control treatment; the animals were only exposed to the experimental tank’s background noise) and 10 days of noise derived from original recordings of motor boats, including recreational boats, hydrofoil, fishing boat and ferry boat (vessel noise treatment). The exposure to noise produced significant variations in almost all the plasma parameters assessed, but no differences were observed in weights and fork lengths. A PERMANOVA analysis highlighted significantly increased values (p < 0.05) of ACTH, cortisol, glucose, lactate, haematocrit, Hsp70, cholesterol, triglycerides and osmolarity in the fish exposed to vessel noise for 10 days. This study clearly highlights that anthropogenic noise negatively affects fish, and they are valuable targets for detailed investigations into the effects of this global pollutant. Finally, these experimental studies could represent part of the science that is able to improve the quality of the policies related to management plans for maritime spaces (Marine Strategy Framework Directive 56/2008 CE) that are aimed at stemming this pollutant phenomenon.     

Differential Responses of Barley Landraces and Improved Barley Cultivars to Nitrogen-Phosphorus Fertilizer

Barley is traditionally grown in the Mediterranean region as a dryland crop, invariably under drought-stressed conditions and often without inputs such as fertilizer. Following research that demonstrated the benefits of fertilization, even under less-than-favourable rainfall condition, fertilizer use on cereals has increased dramatically in the past few decades in countries of West Asia-North Africa. With developments in breeding new barley cultivars for higher yield, combined with disease resistance and environmental adaptability, it is crucial to assess the extent to which such cultivars respond to fertilizer inputs as this may affect aspects of a breeding strategy, particularly the choice of germplasm for adaptation in any particular environment. Thus, we assessed the yield potential of 30 barley cultivars with a range of germplasm types, including new cultivars and landraces, in a greenhouse in two soil types with and without adequate nitrogen and phosphorus fertilizer, i.e., low and high fertility. By comparison with the unfertilized low fertility soils, the fertilizer treatment increased yield parameters by about 10-fold. However, the rankings of some cultivars changed markedly with fertilization; some increased, others showed poor responses and decreased relatively, and two performed well with and without fertilizer. Based on the differential responses at the initial screening stage in the greenhouse, it is possible to identify lines or cultivars that are highly responsive to fertilizers and to incorporate such germplasm for further development to produce high-yielding cultivars for commercial adoption by farmers.     

Relationship between nitrifier and denitrifier community composition and abundance in predicting nitrous oxide emissions from ephemeral wetland soils

The link between differences in the community composition of nitrifiers and denitrifiers to differences in the emission of nitrous oxide (N₂O) from soils remains unclear. Nitrifier and denitrifier community composition, abundance and N₂O emission activity were determined for two common landscapes characteristic of the North American “prairie pothole region”: cultivated wetlands (CW) vs. uncultivated wetlands (UW). The hypotheses of this study were: (1) landscape selects for different nitrifier and denitrifier communities, (2) denitrification was the dominant N₂O emitting process, and (3) a relationship exists between nitrifier and denitrifier community composition, their abundance, and N₂O emission. Comparisons were made among soils from three CW and three UW at the St. Denis National Wildlife Area. Denaturing gradient gel electrophoresis was used to compare community composition, and quantitative polymerase chain reaction was used to estimate community size. Incubation experiments on re-packed soil cores with ¹⁵N-labeled nitrate were performed to assess the relative contributions of nitrification and denitrification to total N₂O emission. Results indicate: (1) nitrification was the primary source of N₂O emission, (2) cultivation increased nitrifier abundance but decreased nitrifier richness, (3) denitrifier abundance was not affected by cultivation but richness was increased by cultivation, and (4) differences in nitrifier and denitrifier communities composition and abundance between land-use and landform did not correspond to differences in N₂O emission.     

Taxonomic diversity of bacteria associated with the roots of modern, recent and ancient wheat cultivars

Breeding programs for crop plants are designed to improve agronomic characteristics such as yield, fertilizer use efficiency and disease resistance. These programs do not typically consider interactions between plants and soil microflora. This study assessed the bacterial communities associated with roots of various spring wheat (Triticum spp.) cultivars of related lineage. Bacteria (n=ca. 1900) were isolated from the rhizosphere and root interior of Triticum moncoccum PI 167549 (an ancient land race that originated in Turkey), T. aestivum cv. Red Fife (historical spring wheat cultivar released in Canada ca. 1845) and T. aestivum cv. CDC Teal (modern cultivar registered in Canada in 1991) grown at two different field sites. Bacteria were identified by gas chromatography-MIDI (microbial identification software) fatty acid methyl ester analysis. Twenty-eight bacterial genera were identified as being associated with the three wheat cultivars, but only Aureobacter species differed significantly between cultivars with 16 isolates identified from the root interior of PI 167549 compared to one isolate from Red Fife and two from CDC Teal. In contrast, the bacterial endophytic community of the more modern cultivars was more diverse than that seen for the ancient land race. Increases in diversity were not limited to a single genus and some species were selected against. For example, pseudomonads were more numerous and diverse in the root interior (11 species identified in 117 isolates) compared to the rhizosphere (eight species identified in 94 isolates), but Pseudomonas fluorescens abundance decreased in the root interior compared to the rhizosphere. The fact that the roots of newer wheat cultivars were aggressively colonized by endophytic pseudomonads suggests that these bacteria might be exploited as plant growth-promoting rhizosphere bacteria or as a means to establish specific catabolic activities in these plants.     

Molecular analysis suggests that recent <Emphasis Type="Italic">Citrus tristeza virus</Emphasis> outbreaks in Italy were originated by at least two independent introductions

Citrus tristeza virus (CTV) is the causal agent of the most important virus disease of citrus. Numerous CTV isolates differing in biological and molecular characteristics have been reported worldwide. Recently, CTV was detected in Italy in several citrus crops from three separate areas: (1) Cassibile, province of Syracuse; (2) Massafra, province of Taranto; and (3) Belpasso, province of Catania. CTV isolates from Massafra and Cassibile were mild, whereas isolates from Belpasso induced severe symptoms. To study the genetic variation of CTV populations of these areas, 150 samples per area were examined by single strand conformation polymorphism (SSCP) and nucleotide sequence analysis of CTV gene p20. All isolates from the same area showed the same SSCP pattern whereas for each area a different SSCP pattern was obtained. The Massafra and the Cassibile isolates had a nucleotide identity higher than 99% with a mild isolate from Spain and about 92% with the Belpasso isolates, which were similar (identity higher than 99%) to severe isolates from California and Japan. These results suggest at least two independent introductions of CTV in Italy, probably by import of CTV-infected budwoods. Within each area, the virus population was homogeneous suggesting diffusion of CTV by aphid transmission. The GenBank accession numbers of the sequences reported in this paper are: AY262000, AY263360 and AY263361 corresponding to gene p20 of CTV isolates from Massafra, Cassibile and Belpasso (Italy), respectively.     

Estimating clinical chemistry reference values based on an existing data set of unselected animals

In an attempt to standardise the determination of biological reference values, the International Federation of Clinical Chemistry (IFCC) has published a series of recommendations on developing reference intervals. The IFCC recommends the use of an a priori sampling of at least 120 healthy individuals. However, such a high number of samples and laboratory analysis is expensive, time-consuming and not always feasible, especially in veterinary medicine. In this paper, an alternative (a posteriori) method is described and is used to determine reference intervals for biochemical parameters of farm animals using an existing laboratory data set. The method used was based on the detection and removal of outliers to obtain a large sample of animals likely to be healthy from the existing data set. This allowed the estimation of reliable reference intervals for biochemical parameters in Sarda dairy sheep. This method may also be useful for the determination of reference intervals for different species, ages and gender.     

Insulin sensitivity in Belgian horses with polysaccharide storage myopathy

OBJECTIVE: To determine insulin sensitivity, proportions of muscle fiber types, and activities of glycogenolytic and glycolytic enzymes in Belgians with and without polysaccharide storage myopathy (PSSM). ANIMALS: 10 Quarter Horses (QHs) and 103 Belgians in which PSSM status had been determined. PROCEDURES: To determine insulin sensitivity, a hyperinsulinemic euglycemic clamp (HEC) technique was used in 5 Belgians with PSSM and 5 Belgians without PSSM. Insulin was infused i.v. at 3 mU/min/kg for 3 hours, and concentrations of blood glucose and plasma insulin were determined throughout. An i.v. infusion of glucose was administered to maintain blood glucose concentration at 100 mg/dL. Activities of glycogenolytic and glycolytic enzymes were assessed in snap-frozen biopsy specimens of gluteus medius muscle obtained from 4 Belgians with PSSM and 5 Belgians without PSSM. Percentages of type 1, 2a, and 2b muscle fibers were determined via evaluation of >or= 250 muscle fibers in biopsy specimens obtained from each Belgian used in the aforementioned studies and from 10 QHs (5 with PSSM and 5 without PSSM). RESULTS: Belgians with and without PSSM were not significantly different with respect to whole-body insulin sensitivity, muscle activities of glycogenolytic and glycolytic enzymes, or proportions of muscle fiber types. However, Belgians had an increased proportion of type 2a and decreased proportion of type 2b muscle fibers, compared with proportions in QHs, regardless of PSSM status. CONCLUSIONS AND CLINICAL RELEVANCE: PSSM in Belgians may be attributable to excessive glycogen synthesis rather than decreased glycogen utilization or enhanced glucose uptake into muscle cells.