A lack of large-diameter logs and snags characterises dead wood patterns in Irish forests

Dead wood is an important component of forest ecosystems and volumes vary depending on forest age, management intensity and productivity. This is the first large-scale study to quantify dead wood in Irish forests and to compare them to forests in other locations. We measured the volume and size distribution of logs, the density and size distribution of snags and the volume of dead wood contained in stumps in Oak (Quercus spp.) and Ash (Fraxinus excelsior) forests and in Sitka spruce (Picea sitchensis) plantations throughout Ireland. We also assigned each log, snag and stump to one of three decay classes (intact, part-rotted and well-rotted). We found no significant difference in log volume between any of the forest types. The majority (>90%) of logs were less than 20 cm in diameter, and large logs (>40 cm diameter) were scarce. We found a relatively high density of snags in all forest types but, as in the case of logs, over 90% of snags were <20 cm DBH and large snags (>40 cm DBH) were rare. The volume of dead wood contained in stumps was significantly higher in plantations than in Oak or Ash forests as a result of thinning and harvesting. Most logs and snags were moderately decayed but, in plantations, most stumps were intact. Log volume and the size of logs and snags were considerably lower than in old-growth forests in other regions. These patterns may reflect historical use of Irish forests for coppice and timber production. Management for biodiversity should aim to accelerate dead wood accumulation to increase the frequency of large-diameter logs and snags. Although management seeking to replicate the dead wood volumes of old-growth forests is ideal, it may be unrealistic in the short term.     

City sanitation and socioeconomics predict rat zoonotic infection across diverse neighbourhoods

Rat‐associated zoonoses transmitted through faeces or urine are of particular concern for public health because environmental exposure in homes and businesses may be frequent and undetected. To identify times and locations with greater public health risks from rats, we investigated whether rat characteristics, environmental features, socioeconomic factors, or season could predict rat infection risk across diverse urban neighbourhoods. In partnership with a pest management company, we sampled rats in 13 community areas along an income gradient in Chicago, a large city where concern about rats has increased in recent years. We collected kidneys for Leptospira spp. testing and colon contents for aerobic bacteria such as Salmonella spp. and Escherichia coli. Of 202 sampled rats, 5% carried Leptospira spp. and 22% carried E. coli. Rats were significantly more likely to carry Leptospira spp. on blocks with more standing water complaints in higher‐income neighbourhoods (OR = 6.74, 95% CI: 1.54–29.39). Rats were significantly more likely to carry E. coli on blocks with more food vendors (OR = 9.94, 2.27–43.50) particularly in low‐income neighbourhoods (OR = 0.26, 0.09–0.82) and in the spring (OR = 15.96, 2.90–88.62). We detected a high diversity of E. coli serovars but none contained major virulence factors. These associations between environmental features related to sanitation and infection risk in rats support transmission through water for Leptospira spp. and faecal–oral transmission for E. coli. We also found opposing relationships between zoonotic infection risk and income for these two pathogens. Thus, our results highlight the importance of sanitation for predicting zoonotic disease risks and including diverse urban areas in pathogen surveillance to mitigate public health risks from rats.     

Viability of pathogenic Naegleria and Acanthamoeba isolates during 10 years of cryopreservation

This is a follow-up report on the viability of pathogenic Naegleria fowleri, Naegleria australiensis and Acanthamoeba castellanii isolates during 5 to 10 years of cryopreservation at -70 degrees C. The greatest decrease in viability occurred with N. fowleri and the least occurred with N. australiensis. At 10 years of cryostorage, viability was 21% for N. fowleri, 32% for A. castellanii and 51% for N. australiensis.