Speciation in the parthenogenetic oribatid mite genus Tectocepheus (Acari, Oribatida) as indicated by molecular phylogeny

Despite the lack of universal concepts for species and speciation, both sexual and asexual organisms are expected to diversify into discrete genotypic and morphological clusters. Species-rich clusters of parthenogenetic oribatid mites likely evolved in the absence of sexual reproduction. We used nucleotide sequences of the large and small rDNA genes (18S and 28S) and the coding genes for heat shock protein 82 (hsp82) and elongation factor-1 alpha (ef-1α) for phylogenetic analyses of three morphotypes of the parthenogenetic oribatid mite genus Tectocepheus. DNA sequence divergences of the different morphotypes were similar to those of sexual species in other organisms. Maximum likelihood analyses of single genes and combined data sets were largely congruent in reconstructing the phylogeny of the Tectocepheus species. The results suggest that the different morphotypes of Tectocepheus indeed evolved in the absence of sexual reproduction, and that Tectocepheus minor, Tectocepheus velatus and Tectocepheus sarekensis are best considered distinct species. Further, the results suggest that 18S rDNA, hsp82 and ef-1α are powerful markers for resolving phylogenetic relationships of oribatid mites. Saturation plots indicated that the D3-region of 28S is much more saturated than all other examined genes. This indicates that the D3-region is unsuitable for resolving ancient splits in oribatid mites.     

Assessment of phytochemical and genetic diversity analysis of Plumbago zeylanica L. accessions

Genetic Resources and Crop Evolution - Selection of elite accessions is important to get the maximum quantity of bioactive compounds in medicinal plants. In this study, thirteen accessions...     

Potide-G derived from potato (Solanum tuberosum L.) is active against potato virus YO (PVYO) infection

A PVYO virus-resistant potato (Solanum tuberosum L. cv. Golden Valley) was identified, and further, from its tubers, a small (5.57 kDa) antiviral peptide potide-G was isolated. Application of potide-G on virus susceptible potato (cv. Winter valley) expressed robust resistance to PVYO infection and showed no virus infected morphology. We found that PVYO infection spreads up completely within 3 days post inoculation (dpi) in susceptible cultivar. PVYO was more accumulated toward the basal leaves, when infection occurred longer. Combined results of morphology of PVYO infection, ELISA, RT-PCR, and real-time PCR showed the resistance to the PVYO infection depends on the expression of Ry gene. Indeed, the real-time PCR result showed that the Ry gene up-regulated to 3 times higher in PVYO infected cv. Golden valley. Golden crude protein was found to be active against PVYO infection in the in vivo test. In addition, application of potide-G in a virus susceptible potato potently reduced the viral infection actively with 50 times lower concentration than that of the Golden protein. Further identification of a host-specific resistant gene in a plant and the peptide derived from it offers new opportunities for the development of novel bio-pesticides against plant virus.     

Labile soil organic carbon,soil fertility,and crop productivity as influenced by manure and mineral fertilizers in the tropics

In recent years, organic agriculture has been receiving greater attention because of the various problems like deterioration in soil health and environmental quality under conventional chemical‐intensive agriculture. However, little information is available on the comparative study related to the impact of use of mineral fertilizers and organic manures on the soil quality and productivity. A long‐term field experiment was initiated in 2001 to monitor some of the important soil‐quality parameters and productivity under soybean–wheat crop rotation. The treatments consisted of 0, 30, and 45 kg N ha^–1 for soybean and of 0, 120, and 180 kg N ha^–1 for wheat. The entire amount of N was supplied to both the crops through urea and farmyard manure (FYM) alone or in combination at 1:1 ratio. Results indicated that Walkley‐and‐Black C (WBC; chromic acid–oxidizable) exhibited a marginal increase under only organic treatments as compared to control treatment (without fertilizers and manure) after completion of five cropping cycles. In case of labile‐C (KMnO₄‐oxidizable) content in soil, relatively larger positive changes were recorded under organic, mixed inputs (integrated) and mineral fertilizers as compared to WBC. Maximum improvement in the values of C‐management index (CMI), a measure of soil quality was recorded under organic (348–362), followed by mixed inputs (268–322) and mineral fertilizers (198–199) as compared to the control treatment after completion of five cropping cycles. Similarly there was a substantial increase in KCl‐extractable N; in Olsen‐P; as well as in DTPA‐extractable Zn, Fe, and Mn under organic treatments. Although labile soil C positively contributed to the available N, P, K, Zn, Fe, and Mn contents in soil, it did not show any relationship with the grain yield of wheat. After completion of the sixth cropping cycle, organic treatments produced 23% and 39% lower grain yield of wheat as compared to that under urea‐treated plots. Relatively higher amount of mineral N in soil at critical growth stages and elevated N content in plant under mineral‐fertilizer treatments compared to FYM treatments were responsible for higher yield of wheat under mineral fertilizers.     

Physicochemical requirements in the environment of the earthworm Eisenia foetida

Survival and/or growth were used to assess optimum and potentially deleterious physico-chemical conditions in the environment of the earthworm Eisenia foetida. Maximum weight was gained between 20 and 29°C with horse manure or activated sludge as food. Maximum weight gain as a function of moisture in activated sludge occurred between 70 and 85%. All worms died within a week at pH values <5 or >9; optimum pH for gain in weight centered around 7.0 Soluble salts in excess of 0.5% were lethal, though ammonium acetate caused 100% mortality at a concentration of 0.1%; concentrations in manures contaminated by urine or cattle slurry may be lethal, while those present in noncontaminated manure, with an electrolytic conductivity of 1.5–3mmhos, support weight gain. Inorganic chemicals that are commonly used to coagulate sludges, often as a preliminary to land application, were innocuous at concentrations higher than those normally used at wastewater treatment plants. Anaerobically digested sludges are toxic to earthworms, and are characterized by low oxidation-reduction potentials; when placed upon a soil substrate the redox potential increases slowly, and though the sludge tested in this study was nontoxic at Eh values in excess of 250 mV, it provided insufficient nutriment to E. foetida to allow weight gain. With activated sludge as food, growth of E. foetida occurred more rapidly when soil was present, independently of whether it was placed as a substrate beneath the sludge or mixed into the sludge. Growth occurred more rapidly when activated sludge was placed on substrates which allowed drainage, though loam or ashed loam appeared superior to others, such as glass beads or sand; the growth promoting factor is related to the inorganic fraction of the soil.     

Dynamics of microbial biomass and nitrogen supply during primary succession on blastfurnace slag dumps in dry tropics

This paper reports the role of microbial biomass in the establishment of N pools in the substratum during primary succession (till 40-year age) in Blastfurnace Slag Dumps, an anthropogenically created land form in the tropics. Initially in the depressions in the slag dumps fine soil particles (silt+clay) accumulate, retaining moisture therein, and providing microsites for the accumulation of microbial biomass. In all sites microbial biomass showed distinct seasonality, with summer-peak and rainy season-low standing crops. During the summer season microbial biomass C ranged from 18.6 μg g⁻¹ in the 1-year old site to ca. 235 μg g⁻¹ in the 40-year old site; correspondingly, microbial biomass N ranged from 1.22 to 40 μg g⁻¹. On sites 2.5-years of age and younger, the microbial biomass N content accounted for more than 50% of the organic N in the soil, whereas the proportion of microbial biomass N was ca. 7% of organic N in 40-year old site. The strong correlation between microbial biomass and total N in soil indicated a significant role of microbes in the build-up of nitrogen during the initial stages of succession in the slag dumps. Though the organic N pool in the soil was low (594 mg kg⁻¹) even after 40 years of succession, the available N (NH₄-N and NO₃-N) contents in the soil were generally high through the entire age series (ca. 16-32 μg g⁻¹) during the rainy season (which supports active growth of the herbaceous community). The high mineral-N status on the slag dump was related with high N-mineralization rates, particularly in the young sites (20.6 and 13.9 μg g⁻¹ month⁻¹ at 1 and 2.5-year age). We suggest that along with the abiotic factors having strong effect on ecosystem functioning, the microbial biomass, an important biotic factor, shows considerable influence on soil nutrient build-up during early stages of primary succession on the slag dumps. The microbial biomass dynamics initiates biotic control in developing slag dumps ecosystem through its effect on nitrogen pools and availability.     

Isozyme Banding Pattern and Estimation of Genetic Diversity among Guinea Grass Germplasm

Isozyme banding pattern was studied in Guinea grass (Panicum maximum Jacq.), a widely cultivated grass having good fodder value. Similarity among 63 accessions collected from diverse sources was worked out using five enzyme systems (SOD, GOT, ACP, Esterase and Peroxidase) following horizontal starch gel electrophoresis. Biochemical markers such as isozymes are useful supplements in identifying the genetic variation present in any crop. A total of 35 clear and unambiguous bands were used for analysis of which 8 bands were monomorphic. Polymorphism exhibited by 27 bands from all five enzyme systems indicate presence of considerable diversity in this species. The dendrogram generated after UPGMA and SAHN cluster analysis using Jaccard genetic distance showed that 63 accessions from diverse geographical locations could be grouped in three main clusters, of which two could further be divided into sub-clusters. Although the clusters comprised members from different locations, most of the accessions from similar geographical locations tended to cluster in same group.     

Effect of conservation agriculture on soil organic and inorganic carbon sequestration and lability: A study from a rice–wheat cropping system on a calcareous soil of the eastern Indo-Gangetic Plains

Increasing soil carbon (C) in arable soils is an important strategy to achieve sustainable yields and mitigate climate change. We investigated changes in soil organic and inorganic carbon (SOC and SIC) under conservation agriculture (CA) in a calcareous soil of the eastern Indo-Gangetic Plains of India. The treatments were as follows: conventional-till rice and wheat (CT-CT), CT rice and zero-till wheat (CT-ZT), ZT direct seeded rice (DSR) and CT wheat (ZT-CT), ZTDSR and ZT wheat without crop residue retention (ZT-ZT), ZT-ZT with residue (ZT-ZT+R), and DSR and wheat both on permanent beds with residue (PB-PB+R). The ZT-ZT+R had the highest total SOC in both 0–15 and 15–30 cm soil layers (20% and 40% higher (p < .05) than CT-CT, respectively), whereas total SIC decreased by 11% and 15% in the respective layers under ZT-ZT+R compared with CT-CT. Non-labile SOC was the largest pool, followed by very labile, labile and less labile SOC. The benefits of ZT and residue retention were greatest for very labile SOC, which showed a significant (p < .05) increase (~50%) under ZT-ZT+R compared with CT-CT. The ZT-ZT+R sequestered ~2 Mg ha⁻¹ total SOC in the 0–15 cm soil layer in 6 years, where CT registered significant losses. Thus, the adoption of CA should be recommended in calcareous soils, for C sequestration, and also as a reclamation technique.     

Evaluation of chitosan and alginate immobilized Methylobacterium oryzae CBMB20 on tomato plant growth

Methylobacterium oryzae CBMB20, a promising plant growth promoting bacteria (PGPB) and a biocontrol agent, was immobilized in different formulations such as wet chitosan, dry chitosan, wet alginate and dry alginate and were tested for tomato plant growth promotion. Chitosan solution (1.5%) with pH 5.5–6.0 and 90 min contact time was found optimal for immobilization. The chitosan formulations showed better entrapment efficiency and good degradability resistance apart from slow release of cells under prolonged incubation. Survivability of bacteria (80%) was observed in wet chitosan formulation even after 90 days of storage at 4°C. The spermosphere survival of bacteria was high in both dry and wet chitosan formulations applied soils even after 21 days under greenhouse conditions. While the alginate formulation degraded fully, partial degradation of chitosan formulation was observed even after 30 days, indicating its ability to support the survival of M. oryzae CBMB20 in soil. Plants inoculated with wet chitosan formulation registered 1.3 fold increase in the shoot and root length and dry weight compared to other treatments. Hence, chitosan formulation supporting better plant growth compared to alginate will be a better carrier for taking bacteria to the plant rhizosphere and thereby promote plant growth.     

Ion-pair reverse phase liquid chromatographic determination of sodium acifluorfen in feed

Ion-pair reverse phase liquid chromatography (LC) and UV detection at 280 nm have been used to determine sodium acifluorfen (sodium-5-[2-chloro-4-(trifluoromethyl)-phenoxy]-2-nitrobenzoate), an experimental diphenyl ether herbicide, in dog feed. Sodium-5-(2,4-dichlorophenoxy)-2-nitrobenzoate is used as the internal standard. The feed is homogenized in 0.01N HCl, followed by ethyl acetate extraction, and centrifugation. The organic layer is removed and evaporated and the residue is reconstituted in methanol and filtered before LC analysis (mobile phase methanol-water (58 + 42), 0.005M in tetrabutylammonium phosphate and 0.045M in (NH4)2HPO4, at pH 7.4). The ion-pair technique offers a high degree of control over the retention characteristics of the herbicide and internal standard. The use of the internal standard permits precise and accurate quantitation and substantially reduces analysis time compared with the external standard method.