A new approach and case study for estimating extent and rates of habitat loss for ecological communities

The pace and magnitude of biodiversity loss has led to wide recognition that efforts to conserve individual species must be complemented by assessment and planning at community and ecosystem levels. Emerging protocols for assessing the conservation status of communities include as central criteria the current extent, historical reduction and contemporary rate of decline in geographic distribution. Estimation of these parameters is confronted by methodological challenges, data limitations and uncertainties that may vary from case to case. We describe an approach to these issues comprising five steps: (1) classification of the community using an analysis of data from systematic ground surveys; (2) mapping to produce a contemporary baseline distribution (1980s); (3) interpolation to produce a historical distribution (pre-European settlement); (4) interpretation of satellite imagery to update the distribution (various dates up to 2004) and (5) assessment of change in extent over historical and contemporary time scales incorporating plausible bounds of uncertainty around best estimates. The bounds can be based on areas for which image interpretation produces uncertain diagnosis of clearing and differences between credible alternative base maps of the same area. We demonstrated the approach using a case study of Coolibah-Black Box Woodland, a declining semi-arid woodland community in Australia and found that 61% (plausible range 50-67%) of the woodland community had been cleared since European settlement and that during 1998-2004 the community continued to decline on average by 135.3(±21.7) km² each year, or 1.7(±0.3)% of each previous year’s distribution, apparently accelerating in recent years. Strengths of the approach include the use of biological data (cf. remote sensing) to distinguish the target assemblage from others, the use of historical and contemporary base lines to examine change over different time scales, and the use of bounded estimates to incorporate uncertainty into the assessment.     

Sporotrichosis: a retrospective evaluation of 23 cases seen in northern California (1987–2007)

Sporotrichosis is an uncommon to rare cutaneous and subcutaneous mycosis of animals and humans caused by the dimorphic fungus Sporothrix schenckii . Twenty-three mammalian cases of sporotrichosis examined between 1987 and 2007 at the University of California, Davis – Veterinary Medical Teaching Hospital, were retrospectively evaluated with regard to the historical, clinical, diagnostic and treatment findings. Cats were the most common species affected ( n  = 14). In addition, sporotrichosis was diagnosed in four dogs, four horses and a donkey. Six of 23 cases were diagnosed with the localized cutaneous form of sporotrichosis (four cats, one dog, one horse), 10 with the cutaneous-lymphatic form (four cats, two dogs, three horses and a donkey), and seven with the disseminated form (six cats, one dog). Two of 23 cases did not have skin lesions at the time of diagnosis (one cat, one dog). The most common mode of diagnosis was demonstration of S. schenckii on histopathological evaluation of tissue. In contrast with most previously described sporotrichosis infections in cats, few to no fungal organisms were seen in histopathological samples (haematoxylin and eosin and special stains) in five of the 14 cats. Treatments received included itraconazole (12 cats, one dog), ketoconazole (three dogs), fluconazole (one cat, one donkey), sodium iodide (four horses, one cat) and potassium iodide (one cat, one horse, one donkey). The prognosis for successful treatment was good in all species. Fluconazole was successful in inducing resolution of the cutaneous lesions and controlling the infection in one cat with disseminated sporotrichosis.     

Effects of Bacillus cereus var. toyoi on immune parameters of pregnant sows

Changing immune parameters during pregnancy have previously been reported in humans and cattle, and have been suggested to contribute to increased susceptibility to infections. However, data regarding immune parameters during pregnancy in sows are rare. In this study, we investigated the peripartal immune status of sows using phenotypical (FACS analysis) as well as functional (proliferation assays, cytokine analysis) parameters of peripheral blood mononuclear cells (PBMCs) in pregnant sows. In previous studies, we reported a modulation of the immune system after feed supplementation of the probiotic Bacillus cereus var. toyoi in piglets [Schierack, P., Wieler, L.H., Taras, D., Herwig, V., Tachu, B., Hlinak, A., Schmidt, M.F., Scharek, L., 2007. Bacillus cereus var. toyoi enhanced systemic immune response in piglets. Vet. Immunol. Immunopathol. 118, 1–11]. Here, we extended these previous studies to include investigations of possible probiotic effects on the peripartal immune status of sows and their reproductivity. We show that immune parameters of sows change during pregnancy, the proliferative response of PBMCs to several bacterial antigens in control animals decreased from days 90 to 30 ante partum. Relative numbers (%) of CD3+CD8+, CD4+, cytotoxic T, CD14+ and CD21+ cells were reduced compared to non-pregnant sows. In contrast, the proliferative response of PBMCs of probiotic-treated sows increased during pregnancy. Bacterial antigens primarily stimulated the proliferation of naïve CD21+ cells and the relative CD21+ cell numbers were elevated in the probiotic group in the absence of effects on other immune cell populations. The clinical and microbial status of both control and probiotic sows was similar, excluding pre-existing health problems or infections as responsible for the immunological changes, and feed supplementation also had no significant effects on reproductivity. The results suggest that the probiotic B. cereus var. toyoi can alter the proliferative response of lymphocytes and affects the immune cell population ratios of pregnant sows. How and to what extent this may affect health and reproductivity should be the focus of further studies.     

孵化期胚胎温度调控技术

在孵化过程中,温度的控制是至关重要的因素,温度的高低将直接影响出雏的效果.适宜的温度能将弱雏率、毛蛋率、死胚率控制在最低水平,并且孵化出的雏鸡发育良好,体格健壮,为今后的生长发育打下坚实的基础.     

In utero infection of cattle with Mycobacterium avium subsp. paratuberculosis: a critical review and meta-analysis

Mycobacterium avium subsp. paratuberculosis (Mptb) causes Johne's disease in ruminants. Disease control programmes aim to break the faecal-oral cow-calf transmission cycle through hygienic calf rearing and removal of affected cows from the herd, but these programmes do not take account of the potential for congenital infection. The aims of this study were to critically review research on in utero infection, determine the prevalence of fetal infection in cattle through meta-analysis and estimate the incidence of calves infected via the in utero route. About 9% (95% confidence limits 6-14%) of fetuses from subclinically infected cows and 39% (20-60%) from clinically affected cows were infected with Mptb (P<0.001). These are underestimates for methodological reasons. The estimated incidence of calf infection derived via the in utero route depends on within-herd prevalence and the ratio of sub-clinical to clinical cases among infected cows. Assuming 80:20 for the latter, estimates of incidence were in the range 0.44-1.2 infected calves per 100 cows per annum in herds with within-herd prevalence of 5%, and 3.5-9.3 calves in herds with 40% prevalence. These estimates were not markedly sensitive to the value chosen for the proportion of clinical cases. In utero transmission of Mptb could retard the success of disease control programmes if the opportunities for post natal transmission via colostrum/milk and environmental contamination were able to be controlled. The consequences of fetal infection for the calves so infected are discussed in the context of diagnosis and vaccination together with recommendations for future research.     

Removal of short‐range‐order minerals prior to grain‐size analysis of volcanic ash soils

Incomplete dispersion of aggregates is a well‐known difficulty when analyzing soil texture of Andosols, particularly if no fresh soil material is available. To facilitate such investigations, several dispersion procedures were carried out on air‐dried samples rich in short‐range‐order minerals, originating from selected Andosol profiles (S Mexico). As a result, we propose an improved method based on a sequential chemical treatment with K oxalate, NH₄ oxalate, and oxalic acid that reliably removes cementing agents and allows for a stable dispersion of soil particles after addition of Na pyrophosphate. This method was proved to be well reproducible and highly reliable for routine grain‐size determinations. The potential error caused by the inherent risk of dissolving primary minerals or fresh volcanic glass remains far beyond the analytical error resulting from the incomplete and irreproducible dispersion of highly resistant aggregates by other commonly used techniques.