Immunogene expression in head kidney and spleen of common carp (<Emphasis Type="Italic">Cyprinus carpio</Emphasis> L.) following thermal stress and challenge with Gram-negative bacterium, <Emphasis Type="Italic">Aeromonas hydrophila</Emphasis>

To evaluate the effect of thermal and microbial stress on the immune response of common carp (Cyprinus carpio L.), relative mRNA expression level of pro-inflammatory cytokines [tumor necrosis factor alpha (TNF-α) and interleukin (IL)-1β] and other genes related to immune or stress response [inducible nitric oxide synthase (iNOS), heat shock protein 70 (Hsp70), superoxide dismutase one (SOD1), and glucocorticoid receptor (GR)] was measured by quantitative PCR (qPCR). In addition, total protein and total immunoglobulin level in blood plasma of experimental common carp was also assayed. All the above parameters were estimated 24 h post-challenge with Gram-negative bacterium, Aeromonas hydrophila. Common carp (54.89?±?6.90 g) were initially exposed to 20 °C (control group) and 30 °C (thermal stress group) water temperature for 30 days, followed by experimental challenge with 2.29?×?10⁸ colony forming unit/mL (CFU/mL; LD₅₀ dose) of A. hydrophila. Exposure of fish to thermal stress and subsequently challenge with A. hydrophila significantly (P?<?0.05) increases the IL-1β mRNA expression in head kidney and spleen of common carp by ~?39.94 and ~?4.11-fold, respectively. However, TNF-α mRNA expression in spleen decreased ~?5.63-fold in control fish challenged with A. hydrophila. Thermal stress and challenge with bacterium suppresses the iNOS and GR mRNA expression in spleen of common carp. Moreover, significant (P?<?0.05) increase in total protein content of blood plasma (~?43 mg/g) was evident in fish exposed to thermal stress and challenged with A. hydrophila. In conclusion, our study highlights the importance of elevated temperature stress and microbial infection in differential regulation of expression of several immunogenes in common carp.     

Suitability of two agglomerated commercial microdiets for rearing larvae of different strains of Coregonus lavaretus under cold‐water conditions

The suitability of two agglomerated commercial microdiets (“Gemma micro^®” and “O.range^®” from now on called diet A and diet B) as a starter feed was tested on larvae of European whitefish (Coregonus lavaretus). Two strains (Baltic and Alpine) were tested in a 60‐day experiment under ambient cold‐water conditions (average 7.6 ± 1.9°C). The experiment was carried out in 400‐L PVC tanks with a stocking density of 5,000 larvae per tank. Samples were removed weekly to determine growth, survival and feed acceptance, in addition to water quality. Striking differences between the feeds and different strains were observed. For one diet, growth and survival were distinctively higher in strain 1 compared to strain 2, where it was invariably low with both diets. For the second diet, growth and survival in strain 1 were also low and similar to strain 2. Feed acceptance in strain 1 was found higher compared to strain 2. Final weights were significantly different with strain 1 being heavier; however, in terms of relative growth rate, no differences between strains were found. Strong differences in the performance in terms of growth, survival and feed acceptance of different strains of European whitefish became apparent. Furthermore, the rearing of larvae exclusively on standard agglomerated commercial microdiets under cold‐water conditions is possible, but not every microdiet is suitable.     

Automated identification of sugar beet diseases using smartphones

Cercospora leaf spot (CLS) poses a high economic risk to sugar beet production due to its potential to greatly reduce yield and quality. For successful integrated management of CLS, rapid and accurate identification of the disease is essential. Diagnosis on the basis of typical visual symptoms is often compromised by the inability to differentiate CLS symptoms from similar symptoms caused by other foliar pathogens of varying significance, or from abiotic stress. An automated detection and classification of CLS and other leaf diseases, enabling a reliable basis for decisions in disease control, would be an alternative to visual as well as molecular and serological methods. This paper presents an algorithm based on a RGB‐image database captured with smartphone cameras for the identification of sugar beet leaf diseases. This tool combines image acquisition and segmentation on the smartphone and advanced image data processing on a server, based on texture features using colour, intensity and gradient values. The diseases are classified using a support vector machine with radial basis function kernel. The algorithm is suitable for binary‐class and multi‐class classification approaches, i.e. the separation between diseased and non‐diseased, and the differentiation among leaf diseases and non‐infected tissue. The classification accuracy for the differentiation of CLS, ramularia leaf spot, phoma leaf spot, beet rust and bacterial blight was 82%, better than that of sugar beet experts classifying diseases from images. However, the technology has not been tested by practitioners. This tool can be adapted to other crops and their diseases and may contribute to improved decision‐making in integrated disease control.     

Dynamics of post‐harvest pathogens Neofabraea spp. and Cadophora spp. in plant residues in Dutch apple and pear orchards

Post‐harvest diseases of apple and pear cause significant losses. Neofabraea spp. and Cadophora spp. infect fruits during the growing season and remain quiescent until disease symptoms occur after several months in storage. Epidemiological knowledge of these diseases is limited. TaqMan PCR assays were developed for quantification of N. alba, N. perennans, C. malorum and C. luteo‐olivacea in environmental samples. Various host tissues, dead weeds and grasses, soil and applied composts were collected in 10 apple and 10 pear orchards in May 2012. Neofabraea alba was detected in 73% of samples from apple orchards and 48% from pear orchards. Neofabraea perennans was present in a few samples. Cadophora luteo‐olivacea was detected in 99% of samples from apple orchards and 93% from pear orchards, whilst C. malorum was not detected in any sample. In apple orchards, highest concentrations of N. alba were found in apple leaf litter, cankers and mummies, and of C. luteo‐olivacea in apple leaf litter, mummies and dead weeds. In pear orchards, N. alba and C. luteo‐olivacea were found in highest concentrations in pear leaf litter and in dead weeds. Substrate colonization varied considerably between orchards. The temporal dynamics of pathogens was followed in four apple orchards and four pear orchards. In apple orchards the colonization by pathogens decreased from April until August and increased from September until December. This pattern was less pronounced in pear. Knowledge on population dynamics is essential for the development of preventative measures to reduce risks of fruit infections during the growing season.     

Demography and population projection of <Emphasis Type="Italic">Myzus persicae</Emphasis> (Sulz.) (Hemiptera: Aphididae) on five pepper (<Emphasis Type="Italic">Capsicum annuum</Emphasis> L.) cultivars

The green peach aphid, Myzus persicae (Sulzer) (Hemiptera: Aphididae), is a major pest of pepper. In this study, we collected data on the development, survival, fecundity, and proportion of apterous and alate forms of green peach aphid reared on five commercial pepper cultivars (Amiral, Erciyes, Mert, Mertcan, and Naz) at 25?±?1°C, 60?±?5% RH, and a photoperiod of 16:8 (L:D) h. We analyzed the life history raw data by using the age-stage, two-sex life table. The shortest development time (6.66 days) and highest fecundity (62.68 individuals) occurred on the Erciyes cultivar. The highest intrinsic rate of increase (r?=?0.332 d^?1), finite rate of increase (λ?=?1.394 d^?1), net reproductive rate (R₀?=?62.7 offspring) and shortest mean generation time (T?=?12.45 d) also occurred on the Erciyes cultivar; while the lower fitness occurred on the Amiral, Mertcan and Naz cultivars. Our results compared differences in the population growth rate of M. persicae on different pepper cultivars. This information will be useful to individuals working in pest management programs particularly those involving M. persicae.     

Hide and seek – Infection rates and alkaloid concentrations of Epichloë festucae var. lolii in Lolium perenne along a land‐use gradient in Germany

The common forage grass Lolium perenne has evolved with the systemic fungal endophyte Epichloë festucae var. lolii. The endophyte provides herbivore resistance to the grass due to defensive alkaloids, some of which are toxic to grazing livestock. In this field study, we determine whether distribution of the endophyte‐grass association changes along a land‐use intensity gradient on 87 managed grasslands in three German regions. Endophyte infections were detected in 66% of the studied sites and infection rates within infected sites ranged from 1% to 95%. Alkaloid concentrations of lolitrem B (vertebrate toxin) exceeded the toxicity thresholds in 50 (14%) of 351 infected plants and of peramine (invertebrate deterrent/toxin) in 12 (3%) of 351 plants. Infection rates and alkaloid concentrations were not significantly affected by land‐use intensity and region, but alkaloid concentrations were higher in summer compared to spring. We conclude that risks for livestock intoxication are currently low, as (i) average alkaloid concentrations per grassland were always below toxicity thresholds and as (ii) none of the grasslands was dominated by L. perenne. We suggest avoidance of grass monocultures in Europe to keep intoxication risks for livestock low; we also recommend regular examination of seeds and grasslands, as seed producers might accidentally distribute infected seeds, and as climate warming might further enhance the distribution of Epichloë endophytes in European grasslands.     

Bleaching of Hemp (<Emphasis Type="Italic">Cannabis Sativa</Emphasis> L.) Fibers with Peracetic Acid for Textiles Industry Purposes

Hemp plant exhibits various eco-friendly properties and hemp fiber processing does not cause environmental damage, however, it is known that most chemical operations have a risk to interrupt a sustainable production. As stated in several studies, peracetic acid is an important environmental friendly bleaching agent when compared to its conventional competitors. In this study, hemp fabric was bleached with peracetic acid with exhaustion and padding methods. The effects of temperature, pH, process time, concentration on whiteness values were determined. The influences of bleaching processes were investigated via instrumental and imaging methods. Physical properties of the treated fibers were also tested. Besides peracetic acid, hydrogen peroxide bleaching was carried out for comparison. COD values of bleaching effluents were analyzed for selected samples. Higher whiteness values were obtained with exhaustion bleachings than pad-batch bleachings. Quite high whiteness values (up to 68.13 Stensby whiteness index) attained in peracetic acid without significant fiber damage.     

Adaptation of regional digital soil mapping for precision agriculture

In the initial phase of a national project to map clay, sand and soil organic matter (SOM) content in arable topsoil in Sweden, a study area in south-west Sweden comprising about 100 000 ha of arable land was assessed. Models were created for texture, SOM and two estimated variables for lime requirement determination (target pH and buffering capacity), using a data mining method (multivariate adaptive regression splines). Two existing reference soil datasets were used: a grid dataset and a dataset created for individual farms. The predictor data were of three types: airborne gamma-ray spectrometry data, digital elevation from airborne laser scanning, and legacy data on Quaternary geology. Validations were designed to suit applicability assessments of prediction maps for precision agriculture. The predictor data proved applicable for regional mapping of topsoil texture at 50 × 50 m² spatial resolution (root mean square error: clay = 6.5 %; sand = 13.2 %). A novel modelling strategy, ‘Farm Interactive’, in which soil analysis data for individual farms were added to the regional data, and given extra weight, improved the map locally. SOM models were less satisfactory. Variable-rate application files for liming created from derived digital soil maps and locally interpolated soil data were compared with ‘ground truth’ maps created by proximal sensors on one test farm. The Farm Interactive methodology generated the best predictions and was deemed suitable for adaptation of regional digital soil maps for precision agricultural purposes.     

High-EPA Biomass from Nannochloropsis salina Cultivated in a Flat-Panel Photo-Bioreactor on a Process Water-Enriched Growth Medium

Nannochloropsis salina was grown on a mixture of standard growth media and pre-gasified industrial process water representing effluent from a local biogas plant. The study aimed to investigate the effects of enriched growth media and cultivation time on nutritional composition of Nannochloropsis salina biomass, with a focus on eicosapentaenoic acid (EPA). Variations in fatty acid composition, lipids, protein, amino acids, tocopherols and pigments were studied and results compared to algae cultivated on F/2 media as reference. Mixed growth media and process water enhanced the nutritional quality of Nannochloropsis salina in laboratory scale when compared to algae cultivated in standard F/2 medium. Data from laboratory scale translated to the large scale using a 4000 L flat panel photo-bioreactor system. The algae growth rate in winter conditions in Denmark was slow, but results revealed that large-scale cultivation of Nannochloropsis salina at these conditions could improve the nutritional properties such as EPA, tocopherol, protein and carotenoids compared to laboratory-scale cultivated microalgae. EPA reached 44.2% ± 2.30% of total fatty acids, and α-tocopherol reached 431 ± 28 µg/g of biomass dry weight after 21 days of cultivation. Variations in chemical compositions of Nannochloropsis salina were studied during the course of cultivation. Nannochloropsis salina can be presented as a good candidate for winter time cultivation in Denmark. The resulting biomass is a rich source of EPA and also a good source of protein (amino acids), tocopherols and carotenoids for potential use in aquaculture feed industry.