Evaluation of the long-term oral consequences of equine exodontia in 50 horses

The aims of this study were to objectively evaluate and quantify the process of post-extraction cheek teeth (CT) dental drift in horses, and to report on associated disorders of CT wear and long-term periodontal health. Fifty horses that had CT oral extraction because of apical infection were prospectively re-examined and a full oral examination, including measurements of some dental parameters, was performed.Narrowing of the extraction space was noted in all cases with complete closure occurring in 18% of horses. The rate of dental drift was calculated as 15.7% of extraction space/year (range 4–50%) and was not associated with the age at extraction (P = 0.78) or frequency of dental care since extraction (P = 0.48). There was a significant negative relationship between the rate of dental drift and the duration of time since extraction (P = 0.008). Overgrowths were present on the opposite CT row in 98% of horses, including opposite the extracted CT and on the Triadan 06s and 11s. No significant difference was noted in either the number of diastemata (P = 0.9) or periodontal disease score (P = 0.8) between the extraction and the contralateral cheek tooth rows.     

Temporal dynamics of nutrient and carbohydrate distribution during crop cycles of Rosa spp. ‘Kardinal’ in response to light availability

Rose plants that are flush harvested exhibit episodic growth patterns. During these crop cycles little biomass accumulation occurs immediately following harvest; and as new shoots emerge a period of rapid shoot growth and biomass accumulation occurs. The temporal changes in whole-plant nutrient and carbohydrate distribution during these crop cycles and the role of storage in new shoot growth are not well documented. The objective of this project was to quantify N, P, K, and total non-structural carbohydrates (TNC) distribution in roots, base stems, base leaves, and new shoots during crop cycles in response to light availability. Plants were grown in solution culture under high or low light (mean daily light integral 45.3 or 13.1 mol m⁻² d⁻¹, respectively) during 30–35 day crop cycles. Every five days destructive sampling was used to determine biomass and N, P, K, and TNC concentration of rose plant compartments. N and TNC accumulated in base plant compartments during the first ten days of the crop cycles. N, P, K, and TNC in base plant compartments declined during days 10–25 during a crop cycle concurrent with the rapid growth of flower shoots. N, P, and K storage in base plant parts represents 27, 22, and 24% of the potential N, P, and K required by flower shoots under high light; and 19, 21, and 22% of requirements under low light. TNC storage in base plant parts represents 4–10% of the final biomass of flower shoots. Mobilization of N, P, K, and TNC stored from base plant parts appears to be important during the stage of rapid flower shoot growth when absorption by roots or photosynthesis by shoots was insufficient to meet flower shoot demands. Plant carbohydrate status was improved under high light conditions; storage of N and TNC declined under low light.     

Identification of recombination hotspots and quantitative trait loci for recombination rate in layer chickens

Background: The frequency of recombination events varies across the genome and between individuals, which may be related to some genomic features. The objective of this study was to assess the frequency of recombination events and to identify QTL(quantitative trait loci) for recombination rate in two purebred layer chicken lines.Methods: A total of 1200 white-egg layers(WL) were genotyped with 580 K SNPs and 5108 brown-egg layers(BL)were genotyped with 42 K SNPs(single nucleotide polymorphisms). Recombination events were identified within half-sib families and both the number of recombination events and the recombination rate was calculated within each0.5 Mb window of the genome. The 10% of windows with the highest recombination rate on each chromosome were considered to be recombination hotspots. A BayesB model was used separately for each line to identify genomic regions associated with the genome-wide number of recombination event per meiosis. Regions that explained more than 0.8% of genetic variance of recombination rate were considered to harbor QTL.Results: Heritability of recombination rate was estimated at 0.17 in WL and 0.16 in BL. On average, 11.3 and 23.2 recombination events were detected per individual across the genome in 1301 and 9292 meioses in the WL and BL,respectively. The estimated recombination rates differed significantly between the lines, which could be due to differences in inbreeding levels, and haplotype structures. Dams had about 5% to 20% higher recombination rates per meiosis than sires in both lines. Recombination rate per 0.5 Mb window had a strong negative correlation with chromosome size and a strong positive correlation with GC content and with CpG island density across the genome in both lines. Different QTL for recombination rate were identified in the two lines. There were 190 and 199 non-overlapping recombination hotspots detected in WL and BL respectively, 28 of which were common to both lines.Conclusions: Differences in the recombination rates, hotspot locations, and QTL regions associated with genomewide recombination were observed between lines, indicating the breed-specific feature of detected recombination events and the control of recombination events is a complex polygenic trait.     

Assessment of gastrointestinal nematode infection,anthelmintic usage and husbandry practices on two small-scale goat farms in Malaysia

Haemonchosis is a common problem on goat farms in tropical countries such as Malaysia. Prevention of production losses generally depends on the use of anthelmintic drugs, but is threatened by the emergence of anthelmintic resistance. This study investigates anthelmintic efficacy on small-scale Malaysian goat farms and describes putative risk factors. Adult goats had moderate to high pre-treatment faecal trichostrongyle egg counts, despite being housed on slatted floors and fed on cut-and-carry forage, raising questions about the source of nematode infection. Our results show multiple resistance to benzimidazole and macrocyclic lactone anthelmintic drugs and allow us to discuss the genetic origins of resistance with reference to farm husbandry and management. We conclude that improvement in Malaysian goat production efficiency will require the development of sustainable helminth control strategies, underpinned by a better understanding of the origins and population genetics of anthelmintic resistance.     

Genetic diversity of piscine myocarditis virus in Atlantic salmon Salmo salar L. in Ireland

Piscine myocarditis virus (PMCV) is a double‐stranded RNA virus which has been linked to cardiomyopathy syndrome (CMS) in Atlantic salmon (Salmo salar L.). The first recorded outbreak of CMS in Ireland occurred in 2012. Heart tissue samples were collected in the current study from farmed Atlantic salmon from various marine sites around Ireland, and the open reading frames (ORFs) 1 and 3 were amplified and sequenced in order to examine the genetic diversity of PMCV. Results showed PMCV to be largely homogenous in Irish samples, showing little genetic diversity. However, several amino acid positions within both ORF1 and ORF3 showed consistent variations unique to the Irish PMCV strains when compared with previously published Norwegian strains. The phylogeny generated in the present study suggests that PMCV may have been introduced into Ireland in two waves, both coming from the southern part of PMCV's range in Norway. In addition, over three‐quarters of the PMCV strains which were sequenced came from fish not exhibiting any clinical signs of CMS, suggesting that either PMCV is evolving to become less virulent in Ireland or Irish Atlantic salmon are developing immunity to the disease.     

Can climate at the seed-source predict the success of eucalypts planted on sites that have been grazed for over 100 years?

Many regions of southern Australia exposed to broad-acre grazing are denuded of trees. Re-establishing trees in these landscapes is important for both environmental and economic reasons. We investigated whether climate at the site of origin of the seed can inform species selection for tree establishment on ex-pasture sites within agricultural landscapes. We established trials at four sites in the sheep and cattle grazing region of the Midlands of Tasmania at: ‘Woodland Park’; ‘Sorrel Springs’; ‘Inverel’ and ‘Glen Morey’ farms (long-term average rainfalls of 584, 520, 520, and 479 mm, respectively). Eucalypt species were selected, based on high tolerance to frost and drought inferred from climate at the sites of origin and based on the limited scientific literature available, from across Tasmania and mainland Australia. We investigated the mortality, health and height growth of 18 eucalypt species three months, one and six years after planting. Climatic data from the site of origin of the seed of these species was used to group species into categories of mean annual temperature and mean annual rainfall at seed-source. Sensitivity of species to environment was investigated and compared using modified joint regression. At three planting sites, Woodland Park, Sorrel Springs (except health of the temperature category comparison at six years) and Inverel, we found significantly greater height and health one and six years after planting for local (Tasmanian) compared to non-local (Australian mainland) species, and for species where the site of origin of seed was categorised as low or medium mean annual temperature compared with those categorised as high mean annual temperature. There were no significant differences in mortality for these comparisons. At Glen Morey, height was significantly greater at six years after planting of local compared to non-local species and of species from low and medium mean annual temperature categories compared with the high mean annual temperature category. Mortality was significantly greater in local than non-local species six years after planting. Health was not significantly different for these comparisons. Differences in height, health or mortality of species categorised into mean annual rainfall at seed-source were largely non-significant at all sites one and six years after planting. A study of the sensitivity of species to environment of planting indicated that Tasmanian species were less sensitive than mainland species when height data was compared. When health data was compared, species with a site of origin of seed categorised as low rainfall were less sensitive to environment than species categorised as medium and high-mean rainfall. When mortality data was used significant differences were identified in the sensitivity of species to planting environment but this was not related to locality, mean annual temperature or rainfall at seed-source. Species that attained above average height and low mortality across three or more sites included Eucalyptus pulchella, Eucalyptus perineana (Tasmanian species), and Eucalyptus microcarpa, Eucalyptus benthamii and Eucalyptus melliodora (mainland species). Whilst temperature (and to a lesser extent rainfall) at seed-source is a good indicator of the success of tree establishment, high variability between sites points to the need to consider climate, browsing pressure and farm management at the paddock-scale when planning revegetation plantings. This has important implications for carbon sequestration plantings.