Alpha basic crystallin expression in canine mammary tumors

The aim of this study was to evaluate prognostic and/or diagnostic factors of canine mammary tumors by immunohistochemically analyzing the expression of alpha basic crystallin (αB-c). For this, formalin-fixed, paraffin-embedded blocks of 51 naturally-occurring canine mammary tumors (11 benign and 40 malignant) were used. Tissue from eight normal canine mammary glands were served as a control. Immunohistochemically, in the control mammary tissues, a few luminal epithelial cells were αB-c positive but myoepithelial cells were negative. In benign or simple type malignant tumors, αB-c expression was observed in luminal epithelial cells while the myoepithelial basal cells were negative. In benign or complex type malign tumors, positive staining was predominantly found in the cytoplasm of epithelial cells. Immunoreactivity of αB-c was also observed in neoplastic myoepithelial cells. Statistically, the number of cells immunolabeled with αB-c was found to be significantly different among tissues from normal canine mammary glands, benign lesions, and malignant tumors (p < 0.05). αB-c immunoreactivity was higher in malignant tumors than the control mammary tissues (p < 0.001). Data obtained in the current study revealed a strong association between high expression levels of αB-c and primary mammary gland tumors in canines.     

Climate effects and bottom‐up controls on growth and size‐at‐age of Pacific halibut (Hippoglossus stenolepis) in Alaska (USA)

Pacific halibut (Hippoglossus stenolepis) are an ecologically, commercially, and culturally important Alaskan groundfish species. Commercial harvest of halibut dates back to the late 19th century and has been managed by the International Pacific Halibut Commission (IPHC) since 1921. IPHC surveys have revealed declining trends in survey biomass in multiple regions and region‐specific declines in mean size‐at‐age (size‐at‐age) over the past two decades (>50% in some areas). Changes in size‐at‐age can arise from a variety of physical, ecological, sampling, and fishery effects, including size‐dependent fishery or predation mortality, alteration in growth from variability in prey quality or quantity, and changes in temperature‐dependent metabolic demands. Here, we develop and apply a bioenergetics model for halibut using survey‐based diet and temperature data for Alaska to evaluate potential environmental drivers of size‐at‐age. In general, juvenile (<40 cm fork length) foraging rates were highest in the Gulf of Alaska concomitant with higher potential growth and elevated basal metabolic demands during warm summer conditions. In contrast, adult (40–120 cm FL) potential growth was highest in the Eastern Bering Sea, potentially reflecting lower metabolic costs and higher rates of prey consumption in that region. We additionally find evidence for interannual variation in potential growth, with a higher frequency of reduced growth potential in the last decade, particularly in the Eastern Bering Sea in 2015 and 2016 for both juvenile and adult halibut. These results suggest the potential for patterns in size‐at‐age to arise from trophic and environmental constraints that collectively limit growth in some regions and years.     

Compositions and antimicrobial activities of the essential oils of two Hypericum species from Turkey

The chemical compositions of essential oils obtained from Hypericum hyssopifolium var. microcalycinum and Hypericum lysimachioides var. lysimachioides were analysed by using GC and GC-MS. Caryophyllene oxide was found to be the major component. The essential oils of both Hypericum species showed antimicrobial activity against nine microorganism at a concentration of 60 to 80 microg/ml.     

Reference evapotranspiration based on Class A pan evaporation via wavelet regression technique

Accurate estimation of reference evapotranspiration (ET₀) is important for water resources engineering. Therefore, a large number of empirical or semi-empirical equations have been developed for assessing ET₀ from numerous meteorological data. However, records of such weather variables are often incomplete or not always available for many locations, which is a shortcoming of these complex models. Therefore, practical and simpler methods are required for estimating the ET₀. In this study, the efficiency of a wavelet regression (WR) model in estimating reference evapotranspiration based on only Class A pan evaporation is examined. The results of the WR model are compared with those of three pan-based equations, namely the FAO-24 pan, Snyder ET₀ and Ghare ET₀ equations and their calibrated versions. Daily Class A pan evaporation data from the Fresno and Bakersfield stations of the United States Environmental Protection Agency in California, USA, are used in the study. The WR model estimates are compared against those of the FAO-56 Penman–Monteith equation. Results showed that the WR model is capable of accurately predicting the ET₀ values as a product of pan evaporation data.     

Empirical Orthogonal Function analysis of the palmer drought indices

The aim of the paper is to employ Empirical Orthogonal Function (EOF) analysis to drought indices including Palmer Drought Severity Index (PDSI), Palmer Hydrological Drought Index (PHDI), Palmer Moisture Anomaly (Z) Index (Z-Index), Weighted Palmer Drought Severity Index (WPDSI), and Water Deficit (P-PET) Index and to compare their resultant spatial patterns across Turkey. In this respect, the PDSI, PHDI, Z, WPDSI, Aridity Index (AI) and P-PET Index values are calculated based on observed monthly temperature and precipitation values of the 96 Turkish meteorological stations for the 1929-2009 period, and gridded available water holding capacities (AWHC) in 1-m soil depth are extracted from the soil data sets of the Oak Ridge National Laboratory Distributed Active Archive Centre (ORNL DAAC). By considering the strong match among the PDSI, PHDI, and WPDSI based on the results of the patterns of the first EOFs (EOF1) with the highest eigenvalue, we suggest that using and applying one of these drought indices could be adequate for a drought analysis in Turkey. On the other hand, it is evident that the significant results from the EOF2, EOF3 and EOF4 loadings of the PHDI and WPDSI indices have a similar pattern across Turkey. Therefore, with respect to the geographical autocorrelation and magnitudes of the loading values, it is explained that the PDSI and WPDSI in particular could have originated from the same physical process, and one may have a preference for the effective usage of a combination of PDSI, PHDI and Z-Index. Consequently, in a multi-purpose medium- and long-term drought management plan for Turkey or in any country having similar climatic and physical geographical conditions, using one of the three drought indices along with the Z-Index could be acceptable for successful applications.     

Phylogenetic relationships among Triticum L. and Aegilops L. species as genome progenitors of bread wheat based on sequence diversity in trnT-F region of chloroplast DNA

Cultivated wheat, (Triticum aestivum L.), is one of the most important food crops in the world. The Aegilops L. genus is frequently utilized by plant breeders for improving the current wheat cultivars due to their close relationships. Therefore, understanding the phylogenetic relationships among the species of these genera is not only valuable for plant taxonomy, but also for plant breeding efforts. The presented phylogenetic analysis was based on the sequences of trnT-F chloroplast DNA containing three non-coding sub-regions. Twelve genotypes belonging to four species of Triticum L. genus and twenty-four genotypes belonging to eight species of Aegilops genus were used in the current study. The results postulated a close genetic relationship between diploid Aegilops species containing the BB genome and polyploid Triticum species. With the exception of Aegilops cylindrica Host (CCDD), all other Aegilops species having the CC genome were alienated from Aegilops speltoides Tausch (BB) and clustered together. These two clusters joined by a third cluster including the AA genome containing diploid Triticum species.     

Effects of Plant Growth Promoting Rhizobacteria on Yield and Some Fruit Properties of Strawberry

Effects of plant growth promoting rhizobacteria (PGPR) [(Pseudomonas BA-8 (biological control agent), Bacillus OSU-142 (N₂-fixing), and Bacillus M-3 (N₂-fixing and phosphate solubilizing)] on yield and some fruit properties of strawberry cultivar ‘Selva’ in the province of Erzurum, Turkey in 2002–2003. Foliar + root application of PGPR strains significantly increased yield per plant as compared with the control. Root application of PGPR strains significantly increased total soluble solids, total sugar and reduced sugar, but decreased titratable acidity. It was also determined that bacteria applications have no important effect on the average fruit weight and pH. The results of this study suggested that Pseudomonas BA-8, Bacillus OSU-142 and Bacillus M-3 have potential for increasing yield in strawberry plant.