Clavibacter michiganensis subsp. michiganesis: Tracking strains using their genetic differentiations by ISSR markers in Southern Turkey

There is no available data published related to the dissemination of bacterial canker caused by Clavibacter michiganensis subsp. michiganensis (Cmm) and its genetic diversity in Turkey. It is important to control new introduced inoculum sources by commercial seeds and seedlings. Pathogens were identified by morphological features and the identity was confirmed by PCR amplification using a specific primer PSA-4, PSA-R in addition to microbiological tests. ISSR markers showing high polymorphism ratios were selected and used to characterize Cmm strains. The collected strains were classified into different groups on the basis of ISSR-PCR fingerprints, which showed remarkable genetic specificity and diversity not previously identified in Cmm, suggesting that genetic differences are related to dissemination of the pathogen in the region. This is the first ever study carried out on the characterization of Cmm using ISSR. The selected ISSR primers to characterize Cmm can be used to determine genetic differences in further studies.     

Characterization of Promising Apricot (<Emphasis Type="Italic">Prunus armeniaca</Emphasis> L.) Genetic Resources in Malatya,Turkey

The study here was conducted on nearly 12,000 apricot seedlings in the Malatya Region in the Eastern part of Turkey. This region is famous for its horticulture based mainly on apricot production and the Country's highest apricot production originates from this region. The flower and fruit characteristics of all populations, which include apricot seedlings, in the region were evaluated. Based on their horticultural performances, 13 genotypes were selected, of which seven were considered as apricots served in dried form and six as in table consumption form. Among the selected genotypes, the fruit weight ranged between 28.5 and 71.19 g, soluble solids ranged between 12.7 and 26.5%, while the range in total acidity was between 0.35 and 1.80% and fruit development period was between 87 and 183 days. To determine the selected genotypes performance in a similar environment, they were grafted on to 4-year-old rootstocks. The results from these combinations showed that there was some decrease, especially in fruit size and soluble solids, in the genotypes performance when compared to the results of the initial observations. Some differences were also detected in taste, fruit shape, pit shape, fruit flesh firmness, skin and flesh colors. The dry fruit yield was determined as 22.50–28.36% for the selected dry apricot genotypes. The dry fruit yield of all seven genotypes considered for dry consumption were similar to ‘Hacıhaliloğlu’ and higher than ‘Canino’, which were evaluated as control cultivars.     

Ground red peppers: capsaicinoids content,Scoville scores,and discrimination by an electronic nose

High-pressure liquid chromatography (HPLC) was used to determine the capsaicin, dihydrocapsaicin, and total capsaicinoids levels of different ground red pepper samples obtained from local retail markets in Izmir, Turkey. Scoville scores were determined using sensory tests. An electronic nose (EN) was used to discriminate ground red pepper samples by headspace volatiles. EN data were analyzed using discriminant function analysis (DFA). An overall correct classification rate of pepper varieties by EN of 91% was obtained. A linear correlation between capsaicin, dihydrocapsaicin, and total capsaicinoids and Scoville scores was also observed, and R (2) values of 0.89, 0.85, and 0.91 were obtained, respectively.     

Comparing Deterministic and Probabilistic Risk Assessments. A case study at a closed steel mill in southern Sweden (7 pp)

Background, Aims and Scope   Contaminated land is a high priority environmental problem in most of Europe and North-America. Sweden is no exception and generic guideline values have been developed for the initial assessment, but site-specific assessments are also needed. The generic guideline values are not applicable when the exposure conditions are different from the typical Swedish conditions or when the site contains a particularly sensitive ecosystem. The Swedish guideline values have, like in many other countries, been set by using deterministic point estimates for all variables and constants in the used multimedia model. The same approach is common also for site-specific assessments, and a limitation is that it fails to quantify variability and uncertainty. Probabilistic risk assessment provided a method to deal with this problem. Variability and uncertainty in the input parameters (variables or constants) are described by probability distributions, and likewise the output (risk or exposure) is presented as a probability distribution. A substantial number of probabilistic risk assessments for contaminated land at sites in North America, Europe and Asia have been published. However, an extensive review of the literature did not identify any study where probabilistic risk assessment was applied to a site contaminated by an iron or steel industry. Here we will describe such a case, where we have compared a deterministic point estimate with a probabilistic risk assessment for six elements and benzo[a]pyrene. Methods   The site had different metallurgical plants in operation for more than 100 years. Most parts of the steel mill were closed by the mid 1980s, and today the site is used by small-sized enterprises. The soil is contaminated with metals from the previous industrial operations. The present owner plans to develop the site and has therefore initiated extensive investigations of soil contamination. Sixty-two soil samples collected between 1997 and 2000 provided a good coverage of the whole site, and were analyzed for the content of different elements and polycyclic aromatic hydrocarbons (PAH). The exposure assessments were focused on six elements with high concentrations compared to the generic guideline values; arsenic (As), lead (Pb), cadmium (Cd), chromium (Cr), copper (Cu) and zinc (Zn). In addition, benzo[a]pyrene was included due to the high toxicity and comparatively high concentrations. Variability and uncertainty were characterized in a Monte Carlo simulation of exposures (10 000 iterations), and the exposures were evaluated with two land use scenarios; less sensitive use and sensitive use. Results and Discussion   The deterministic point estimates and the probabilistic estimates of the 95th percentile are in approximately the same ranges in the scenario of less sensitive land use. It is only the exposure for arsenic that is slightly above the toxicological reference value (TRV) in the deterministic assessment. In the probabilistic assessment, the exposure for all elements is below the TRV. The results for sensitive land use are applicable to a scenario where the site is developed for general housing. The deterministic point estimates and the probabilistic estimates of the 95th percentile are also here in approximately the same ranges, but the exposure exceeds the TRV for arsenic, cadmium and lead. Drinking water, vegetables grown on site and soil ingestion are the major exposure pathways for this scenario. In this assessment, the estimated intake distributions are applicable to a randomly selected individual. The probability distributions used here to characterize the different soil parameters are typically representing both variability and uncertainty, and the same is true the majority of the exposure variables. We therefore decided not to attempt to separate variability and uncertainty at this stage, but with additional data from a more in-depth site investigation it might be possible to achieve this. Conclusions and Outlook   To the best of our knowledge, this study is the first report on a probabilistic risk assessment on a former iron and steel works site. The materials handled by this industry were less toxic than for many other metallurgical operations, but contaminants may still severely limit the options for future land use. This case study shows that probabilistic exposure estimates for a set of soil contaminants can be quite similar to deterministic point estimates. The main difference is instead to be found in the additional information obtained with the probabilistic assessment. The sensitivity analyses show pathways and input variables that contribute most to variations in the total intake of each contaminant, e.g. dermal contact and ingestion of soil, vegetables and drinking water. This information can be used both in the planning of future land use and for active measures to reduce current exposure. The probabilistic assessment also provides information on the magnitude of exposure and the margin of safety. This information may facilitate risk communication between decision-makers and stakeholders. The presentation of results from probabilistic risk assessments is only briefly discussed in the literature and here we see a need for research and opportunities for enhancement. The choice of data analytical tools may then be of importance, since more complex multimedia models are rather difficult to decipher when implemented within traditional spreadsheet software. Some of the research needs are identified here and in a previous review article in this journal.     

Vernachlässigte Phosphor‐ und Kaliumdüngung im ökologischen Landbau senkt die biologische Stickstofffixierung bei Rotklee und den Kornertrag bei nachfolgendem Hafer

Neglected P and K fertilization in organic farming reduces N₂ fixation and grain yield in a red clover‐oat rotation N₂ fixation is the most important N source in organic farming. An insufficient P, K, and S supply to legumes may reduce their N₂ fixation capacity. Consequently, the total yield of plant production may also be reduced. This problem was studied in a pot experiment with red clover followed by oat. Soil was taken from a field where organic farming had been practiced for more than 30 years without applying any mineral fertilizers or buying additional fodder. The soil (luvisol from loess) was characterized by: pH (CaCl₂) 5.4; lactate‐soluble (CAL) P 5 mg kg^–1 and K 110 mg kg^–1. 6 kg dry soil were mixed with 400 mg P applied as (i) triplesuperphosphate (TSP), (ii) rock phosphate (RP) or (iii) compost from organic household residues (BAK). An additional treatment (iv) with TSP received 1000 mg K as K₂SO₄ (TSP+K) and an additional treatment with RP (v) received only 200 mg P (RP/2). A control treatment received no fertilizer. P application significantly improved the P nutritional status of the plants (P content) and increased the N amount in the shoots of red clover (with 400 mg P per pot by 64 % to 139 % as compared to the control) and the dry matter (DM) yield by 60 % to 130 %. No significant differences between TSP and RP were found. The application of BAK resulted in a significantly higher N yield than the application of RP and TSP. The treatment TSP+K resulted in the highest DM yield (230 %), removal of P was 343 %, of K 228 %, and of N 239 % as compared to the control plants. This indicates a synergistic effect of P, K, and S on N₂ fixation, which was also found with BAK. Oat grown after red clover increased its grain yield by 132 % (200 mg P as RP) to 165 % (400 mg P treatments). This was mainly due to a higher P uptake (up to 172 %) and a higher N uptake (up to 172 %) as compared to the control.     

Analysis of Genetic Relationships among Turkish Cultivars and Breeding Lines of Lens culinatis Mestile Using RAPD Markers

Randomly Amplified Polymorphic DNA markers were used to determine the genetic relationships among Turkish lentil cultivars and breeding lines. Fourteen cultivars and thirteen breeding lines were evaluated to determine genetic variability using nine random 10-mer primers (among 45 primers). Forty-one reproducible bands were obtained, 54% of which were polymorphic. Genetic distances among cultivars and breeding lines were obtained from the simple matching coefficients (SM). The lowest genetic distance was observed between the cultivars of Ali Dayi and Kafkas with 5.0%, while ‘Seyran-96’ and ‘Ozbek’ had the highest genetic distance with 58.3%. An unweighted pair-group method with arithmetic averages (UPGMA) cluster analysis was performed on the distance matrix using Phylip software. The dendrogram clearly showed two distinct groups. The first group is composed of Akm 565 and Akm 563. The second group contains all the cultivars and remaining eleven breeding lines.     

The Impact of Wood Ash and Green Liquor Dregs Application on Ca, Cu, Zn and Cd Contents in Bark and Wood of Norway Spruce

To counteract nutrient depletion and acidification of forest soils, recycling of waste products from the forest industry has been suggested. Spreading of these waste products will probably change the concentration and availability of Ca and heavy metals in forest soils and thereby the contents of these metals in trees. This field study aimed at examining the influence of pellets of wood ash (ash) or a mixture of wood ash and green liquor dregs (ash+GLD) on the contents of Ca, Cd, Cu and Zn in wood and bark of Norway spruce [Picea abies (L.) Karst.]. The waste products were spread in an amount of 3000 kg ha^?1 in 1996 at a felling site in Sweden and in 1999 and 2002 young spruce trees, planted in 1995, were collected and wood and bark were analysed for Ca, Cd, Cu and Zn with AAS. Changes in the metal content of wood and bark of young spruce trees were found 3 and 6 years after spreading pellets of ash or ash+GLD compared with the control. The effect of the treatments on the metal contents of bark and wood differed and was larger after 3 years than after 6 years. Treatment with ash+GLD tended to have less effect on the metal contents of bark and wood than treatment with only ash. An increase in the contents of Cu and Zn in bark or wood, compared with the control, was only found for the ash treatment and only 3 years after application. Both the ash and ash+GLD treatment decreased the Cd content of the wood and/or bark after 3 years, and after 6 years it still was, or tended to be, lower than the control.     

Dipolar antiferromagnetism and quantum criticality in LiErF₄

Magnetism has been predicted to occur in systems in which dipolar interactions dominate exchange. We present neutron scattering, specific heat, and magnetic susceptibility data for LiErF(4), establishing it as a model dipolar-coupled antiferromagnet with planar spin-anisotropy and a quantum phase transition in applied field H(c|| = 4.0 ± 0.1 kilo-oersteds. We discovered non-mean-field critical scaling for the classical phase transition at the antiferromagnetic transition temperature that is consistent with the two-dimensional XY/h(4) universality class; in accord with this, the quantum phase transition at H(c) exhibits three-dimensional classical behavior. The effective dimensional reduction may be a consequence of the intrinsic frustrated nature of the dipolar interaction, which strengthens the role of fluctuations.     

Evaluation of bee venom and hyaluronic acid in the intra-articular treatment of osteoarthritis in an experimental rabbit model

The aim of this study was to investigate bee venom and hyaluronic acid in the intra-articular treatment of osteoarthritis in an experimental rabbit model. Forty-five rabbits were used and they were randomly divided into three groups (BVI, BVII, and HA) and each group was divided to two subgroups to evaluate the radiologic, magnetic resonance imaging, histopathologic, and biochemical evaluation in post treatment second week (a) and twelfth week (b). Radiologically, a significant difference was observed in the HA group (P<0.05). The MRI evaluation of at any time in group BVI(b) was found to be different. No significant differences were seen between the groups, biochemically. Histopathologically, cellularity, and orthochromasia was evident with Safranin-O in the BVI(b) and BVII(a); adhesions were seen in the BVII(a) group and clustering of chondrocyte in the HA(b) group were found to be different. Consequently, intra-articular application of HA and BV for experimental model of osteoarthritis has no significant influence upon recovery after therapy.