Identification of transposable element markers associated with yield and quality traits from an association panel of independent mutants in peanut (<Emphasis Type="Italic">Arachis hypogaea</Emphasis> L.)

To identify marker–trait associations (MTAs) for yield and quality traits in peanut, genic and nongenic Arachis hypogaea transposable element (AhTE) markers were employed in a population consisting of independent mutants from several parents. The population was field-evaluated during the rainy seasons of 2014 and 2015, and genotyped with 110 AhTE markers to check the polymorphisms for AhMITE1 transposition. The gene diversity index ranged from 0.00 to 0.50 with average of 0.35, indicating low to moderate genetic diversity in the population. Diversity analysis indicated the grouping of mutants derived from each parent in respective subgroups. Marker–trait association analysis for 110 markers and 40 traits resulted in 132 highly significant MTAs, represented by 58 AhTE markers for 39 traits. Nutritional traits recorded the highest number of MTAs (38), followed by agronomic traits (35), productivity traits (31), foliar disease resistance (23), and taxonomic traits (5). Seventeen MTAs with phenotypic variance explained (PVE) value above 50 % were observed for resistance to late leaf spot (LLS) and rust, plant height, and pod width. The genic and nongenic AhTE markers associated with the above traits were analyzed for their genomic location and functional annotation so that the significance of these loci can be analyzed in the future.     

Effect of conservation tillage and rice-based cropping systems on soil aggregation characteristics and carbon dynamics in Eastern Indo-Gangetic Plain

Paddy and Water Environment - Traditional rice–wheat cropping system, which follows wet puddling in rice and conventional tillage in wheat, is deteriorating soil health resulting yield...     

Genomic resources for breeding crops with enhanced abiotic stress tolerance

To meet the challenges of climate change, exploring natural diversity in the existing plant genetic resource pool as well as creation of new mutants through chemical mutagenesis and molecular biology is needed for developing climate‐resilient elite genotypes. Ever‐increasing area under existing abiotic stresses as well as emerging abiotic stress factors and their combinations have further added to the problems of the current crop improvement programmes. However, with the advancement in modern techniques such as next‐generation sequencing technologies, it is now possible to generate on a whole‐genome scale, genomic resources for crop species at a much faster pace with considerably less efforts and money. The genomic resources thus generated will be useful for various plant breeding applications such as marker‐assisted breeding for gene introgression, mapping QTLs or identifying new or rare alleles associated with a particular trait. In this article, we discuss various aspects of generation of genomic resources and their utilization for developing abiotic stress‐tolerant crops to ensure sustainable agricultural production and food security in the backdrop of rapid climate change.     

Transgenic citrus expressing the antimicrobial gene <Emphasis Type="Italic">Attacin E</Emphasis> (<Emphasis Type="Italic">attE</Emphasis>) reduces the susceptibility of ‘Duncan’ grapefruit to the citrus scab caused by <Emphasis Type="Italic">Elsinoë fawcettii</Emphasis>

Citrus scab, caused by Elsinoë fawcettii (anamorph Sphaceloma fawcettii), is a common foliar fungal disease affecting many citrus cultivars, including grapefruit. No commercial grapefruit cultivar is resistant to scab, and the disease results in severely blemished fruit which reduces its marketability. Transgenic ‘Duncan’ grapefruit trees expressing the antimicrobial attE gene were produced via Agrobacterium-mediated transformation. In in vitro leaf and greenhouse assays, several transgenic-lines had significantly lower susceptibility to E. fawcettii compared to the non-transformed control (P?P?P?attE mRNA was inversely related to the number of copies detected by Southern blot. The least susceptible line had a single inserted copy of the attE transgene whereas more susceptible lines had multiple copies. Since the attacin mode of action was thought to be specific to Gram-negative bacteria, it was unexpected to find that there was a significant activity against E. fawcettii.     

Isolation, purification and some structural features of the mucilaginous exudate from Musa paradisiaca

The water-soluble polysaccharides isolated from the vascular gel of Musa paradisiaca, were fractionated via anion exchange chromatography into four fractions. Fractionated polymers contained arabinose, xylose and galacturonic acid as major sugars, together with traces of galactose, rhamnose, mannose and glucose residues. Methylation analysis revealed the presence of a highly branched arabinoxylan with a significant amount of terminal arabinopyranosyl units and an arabinogalactan type I pectin. Periodate oxidation studies supported the results of methylation analysis.     

Assessment of genetic diversity of tea (Camellia sinensis (L.) O. Kuntze) by inter-simple sequence repeat polymerase chain reaction

Twenty-five diverse tea (Camellia sinensis(L.) O. Kuntze) cultivars were analyzed using the simple sequence repeat anchored polymorearse chain reaction (SSR-anchored PCR) or Inter SSR-PCR (ISSR). Out of the 45 primers 12were chosen for final study. These amplified a total of 130 bands out of which108 (84%) were polymorphic. A dendrogram was constructed using UPGMA method revealed three distinct clusters of Cambod, Assamand China type, which concur with the known taxonomical classification of tea. These results suggest that the ISSR-PCR method is potentially useful for genetic fingerprinting and molecular taxonomic classification of tea genotypes. This revised version was published online in August 2006 with corrections to the Cover Date.     

Haematology, blood biochemistry and tissue histopathology of lambs maintained on diets containing an insect controlling protein (Cry1Ac) in Bt-cottonseed

This experiment assessed the effect of feeding genetically modified cottonseed (Bt) containing an insect controlling protein (Cry1Ac) on haematology, blood biochemistry and histopathology of lambs. Haemato-biochemicals were estimated at periodic intervals, and histopathology at termination of experiment. Thirty three weaner lambs were fed a composite feed mixture (CFM) ad libitum individually, in three groups for 123 days. The isonitrogenous CFM had roughage (Perl Millet Stover) and concentrate ratio of 350:650. Diet fed to control lambs contained groundnut oil meal as protein source while other two groups received diet containing either whole cottonseed (N-Bt) or Bt-cottonseed (Bt-CS). Daily feed intake and average daily gain were similar among lambs of three groups. Lambs fed N-Bt diet had higher (p < 0.05) serum protein and globulin compared to control and Bt diets, while albumin content was higher (p = 0.018) in Bt diet fed lambs. Serum urea and creatinin content, alkaline phosphatase (ALP) and serum glutamate pyruvic transaminase (SGPT) activities were not different among lamb groups, while urea and creatinin content and ALP activities increased linearly (p < 0.001) with increased feeding period. Blood haemoglobin (Hb), haematocrit (Hc), white blood cells (WBC), mean corpuscular volume (MCV) and mean corpuscular haemoglobin concentration (MCHC) ranged from 11.1% to 11.2%, 31.8% to 32.8%, 7.0 to 8.3 (× 10(3) /μl), 19.1 to 22.5 fl and 33.2% to 35.5%, respectively, were similar among lamb groups. Erythrocyte sedimentation rate (ESR) (p = 0.008) and red blood cell counts (p = 0.006) were higher in Bt diet fed lambs. Control and N-Bt diet fed lambs had mild fatty infiltration in liver and/or micro-calculi in renal cortex, and such lesions were not seen in Bt diet fed lambs. Growth, haemato-biochemical and histopathology did not change by Bt-CS feeding in growing lamb. However, before recommending the use of Bt-CS in routine feed formulations prolonged feeding experiments of Bt-cotton seed require.     

Application of biochar and vermicompost against the rice root-knot nematode (Meloidogyne graminicola): an eco-friendly approach in nematode management

Journal of Plant Diseases and Protection - The rice root-knot nematode (Meloidogyne graminicola) is one of the key pests of rice (Oryza sativa L.) in irrigated and upland rice ecosystems inflicting...