Characterization of West Nile virus (WNV) isolates from Assam,India: Insights into the circulating WNV in northeastern India

West Nile virus (WNV) is a mosquito-borne flavivirus that causes subclinical symptoms, febrile illness with possible kidney infarction and encephalitis. Since WNV was first serologically detected in Assam during 2006, it has become recognized as an important etiological agent that causes acute encephalitis syndrome (AES) in addition to endemic Japanese encephalitis virus (JEV). Therefore, isolating and characterizing the currently circulating strain of WNV is important. The virus was isolated from the cerebrospinal fluid (CSF) of two patients that presented with AES. The genotyping of the isolates HQ246154 (WNIRGC07) and JQ037832 (WNIRTC08) based on the partial sequencing of 921 nucleotides (C-prM-E) of the genome placed them within lineage 5 along with other Indian strains isolated prior to 1982, but the present circulating virus formed a distinct subclade. The derived amino acid sequence alignment indicated substitution in A₈₁T and A₈₄P of the capsid region in HQ246154. A cross-neutralization assay suggested substantial antigenic variation between isolates. The pathogenesis in mice that suggested the circulating WNV was neuroinvasive and comparatively more pathogenic than previous strains from India.     

Polarization of PAR proteins by advective triggering of a pattern-forming system

In the Caenorhabditis elegans zygote, a conserved network of partitioning-defective (PAR) polarity proteins segregates into an anterior and a posterior domain, facilitated by flows of the cortical actomyosin meshwork. The physical mechanisms by which stable asymmetric PAR distributions arise from transient cortical flows remain unclear. We present evidence that PAR polarity arises from coupling of advective transport by the flowing cell cortex to a multistable PAR reaction-diffusion system. By inducing transient PAR segregation, advection serves as a mechanical trigger for the formation of a PAR pattern within an otherwise stably unpolarized system. We suggest that passive advective transport in an active and flowing material may be a general mechanism for mechanochemical pattern formation in developmental systems.     

In vitro culture of female date palm (Phoenix dactylifera L.) tissues

Summary Roots, leaf petioles, shoot tips and immature fruits of female date palm formed the source material for in vitro cultures. Isolated embryos excised from mature seeds were also cultured. Of all the tissues, some of the leaf petioles and fruit mesocarp gave rise to calluses in the media of Staritsky (1970) and Eeuwens (1976). Isolated embryos germinated to produce seedlings in MS (Murashige & Skoog, 1962) medium. Calluses were established from seedling sections but the growth conditions propitious for explants of seedlings were not suitable for female date palm tissues. The main problem in establishing long term tissue cultures has been the browning of the tissues and media. This problem was, at least partially, overcome by adding activated charcoal to the liquid media and cysteine to the solid madia. So far, shoot regeneration in the calluses could not be induced.     

RAPD and SCAR markers for resistance to acochyta blight in lentil

Resistance to ascochyta blight of lentil (Lens culinaris Medikus),caused by the fungus Ascochyta lentis, is determined by a single recessive gene, ral ₂, in the lentil cultivar Indian head. Sixty F₂ individuals from a cross between Eston (susceptible) and Indian head (resistant) lentil were analyzed for the presence of random amplified polymorphic DNA (RAPD) markers linked to the ral ₂gene, using bulked segregant analysis (BSA). Out of 800 decanucleotide primers screened, two produced polymorphic markers that co-segregated with the resistance locus. These two RAPD markers, UBC227₁₂₉₀and OPD-10₈₇₀, flanked and were linked in repulsion phase to the gene ral ₂ at 12 cm and 16 cm, respectively. The RAPD fragments were converted to SCAR markers. The SCAR marker developed from UBC227₁₂₉₀ could not detect any polymorphism between the two parents or in the F₂. The SCAR marker developed from OPD-10₈₇₀ retained its polymorphism. The polymorphic RAPD marker UBC227₁₂₉₀ and the SCAR marker developed from OPD-10₈₇₀ can be used together in a marker assisted selection program for ascochyta blight resistance in lentil. This revised version was published online in July 2006 with corrections to the Cover Date.     

High prevalence of antibiotic resistance in pathogenic Escherichia coli from large- and small-scale poultry farms in Bangladesh

Antibiotic resistance in avian bacterial pathogens is a common problem in the Bangladesh poultry industry. The aim of the present study was to provide information on the present status of antibiotic resistance patterns in avian pathogenic Escherichia coli in Bangladesh. Of 279 dead or sick poultry of different ages, 101 pathogenic E coli strains isolated from broilers and layer hens with colibacillosis infections were screened to determine phenotypic expression of antimicrobial resistance against 13 antibiotics used in both veterinary and human medicine in Bangladesh. Of 101 pathogenic E. coli isolates, more than 55% were resistant to at least one or more of the tested compounds, and 36.6% of the isolates showed multiple-drug-resistant phenotypes. The most common resistances observed were against tetracycline (45.5%), trimethoprim-sulphamethoxazole (26.7%), nalidixic acid (25.7%), ampicillin (25.7%), and streptomycin (20.8%). Resistance to ciprofloxacin (12.9%), chlormaphenicol (8.9%), nitrofurantoin (2%), and gentamicin (2%) was also observed, and none of the isolates were resistant to tigecycline as well as extended spectrum beta-lactamase (ESBL) producers. One isolate was resistant to cefuroxime (1%), cefadroxil (1%), and mecillinam (1%) but was not an ESBL producer. Resistance rates, although significant in Bangladeshi isolates, were found to be lower than those reported for avian isolates from the Republic of Korea and clinical, avian, and environmental isolates from Bangladesh. The high level of antibiotic resistance in avian pathogens from Bangladesh is worrisome and indicates that widespread use of antibiotics as feed additives for growth promotion and disease prevention could have negative implications for human and animal health and the environment.     

In vivo administration of ligands for chicken toll-like receptors 4 and 21 induces the expression of immune system genes in the spleen

Toll-like receptors (TLRs) are a group of conserved proteins that play an important role in pathogen recognition in addition to the initiation and regulation of innate and adaptive immune responses. To date, several TLRs have been identified in chickens, each recognizing different ligands. TLR stimulation in chickens has been shown to play a role in host-responses to pathogens. However, the mechanisms through which TLRs modulate the chicken immune system have not been well examined. The present study was conducted to characterize the kinetics of responses to TLR4 and TLR21 stimulation in chickens following intramuscular injections of their corresponding ligands, lipopolysaccharide (LPS) and CpG oligodeoxynucleotides (ODNs), respectively. To this end, relative expression of cytokine genes in the spleen was determined at 2, 6, 12 and 24 h after injection of TLR ligands. The results indicated that LPS strongly induced the up-regulation of some immune system genes early on in the response to treatment, including interferon (IFN)-γ, interleukin (IL)-10, and IL-1β. Furthermore, treatment with CpG ODN promoted the up-regulation of major histocompatibility complex (MHC)-II, IFN-γ and IL-10. The response to CpG ODN appeared to be somewhat delayed compared to the response to LPS. Moreover, we found a significant increase in IFN-α gene expression in response to LPS but not CpG ODNs. Future studies may be aimed to further characterize the molecular mechanisms of TLR activation in chickens or to exploit TLR agonists as vaccine adjuvants.     

The extent of drying influences the flush of respiration after rewetting in non-saline and saline soils

Drying and rewetting are common events in soils during summer, particularly in Mediterranean climate where soil microbes may be further challenged by salinity. Previous studies in non-saline soils have shown that rewetting induces a flush of soil respiration, but little is known about how the extent of drying affects the size of the respiration flush or how drying and rewetting affects soil respiration in saline soils. Five sandy loam soils, ranging in electrical conductivity of the saturated soil extract (ECe) from 2 to 48 dS m⁻¹ (EC2, EC9, EC19, EC33 and EC48), were kept at soil water content optimal for respiration or dried for 1, 2, 3, 4 or 5 days (referred to 1D, 2D, 3D, 4D and 5D) and maintained at the achieved water content for 4 days. Then the soils were rewet to optimal water content and incubated moist for 5 days. Water potential decreased with increasing drying time; in the 5D treatment, the water potential ranged between −15 and −30 MPa, with the lowest potentials in soil EC33. In moist and dry conditions, respiration rates per unit soil organic C (SOC) were highest in soil EC19. Respiration rates decreased with increasing time of drying; when expressed relative to constantly moist soil, the decline was similar in all soils. Rewetting of soils only induced a flush of respiration compared to constantly moist soil when the soils were dried for 3 or more days. The flush in respiration was greatest in 5D and smallest in 3D, and greater in EC2 than in the saline soils. Cumulative respiration per unit SOC was highest in soil EC19 and lowest in soil EC2 Cumulative respiration decreased with increasing time of drying, but in a given soil, the relationship between water potential during the dry phase and cumulative respiration at the end of the experiment was weaker than that between respiration rate during drying and water potential. In conclusion, rewetting induced a flush in respiration only if the water potential of the soils was previously decreased at least 3-fold compared to the constantly moist soil. Hence, only marked increases in water potential induce a flush in respiration upon rewetting. The smaller flush in respiration upon rewetting of saline soils suggests that these soils may be less prone to lose C when exposed to drying and rewetting compared to non-saline soils.     

Toxico-kinetics, recovery, and metabolism of napropamide in goats following a single high-dose oral administration

Toxicokinetic behavior, recovery and metabolism of napropamide (a pre-emergent herbicide) and its effect on Cytochrome P(450) of liver microsomal pellet were studied following a single high-dose oral administration of 2.5 g kg(-1) and continuous (7 days) oral administration of 500 mg kg(-1) in black Bengal goat. Napropamide was detected in blood at 15 min and the maximum quantity was recovered at 3 h after administration. The absorption rate constant (Ka) value was low indicating poor absorption from the gastrointestinal tract. High elimination half-life (t(1/2) beta) and low body clearance (Cl(B)) values coupled with higher transfer of compound from tissue to central compartment (K(21)) suggest that napropamide persisted in the blood for a long time, i.e., after 72 h of oral administration. The recovery percentage of napropamide, including metabolites, from goats varied from 75.94 to 80.08 and excretion of the parent compound through feces varied from 18.86 to 21.59%, indicating that a major portion of the orally administered napropamide was absorbed from the gastrointestinal tract of goat. Napropamide significantly increased the Cytochrome P(450) content of liver microsomal pellet. The recovery of metabolites from feces, urine, and tissues ranged from 4.2--6.2, 40.81--49.42, and 2.7--11.6%, respectively, during a 4--7 day period. The material balance of napropamide (including metabolites) following a single high-dose oral administration at 2.5 g kg(-1) during 4--7 days after dosing was found to be in the range of 75--80%.     

Correlation among microbial biomass s,soil properties,and other biomass nutrients

The soil physicochemical characteristics and amounts of microbial biomass C, N, and S in 19 soils (10 grassland, 2 forest, and 7 arable soils) were investigated to clarify the S status in granitic regosols in Japan, in order to determine the relationships between biomass S and other soil characteristics and to estimate approximately the annual Sand N flux through the microbial biomass. Across the sites, the amount of biomass C ranged from 46 to 1,054, biomass N from 6 to 158, and biomass S from 0.81 to 13.44 mg kg_-1 soil with mean values of 438.8, 85.8, and 6.15 mg kg_-1 soil, respectively. Microbial biomass Nand S accounted for 3.4–7.7% and 1.1–4.0% of soil total Nand S, respectively. The biomass C: N, C : S, and N : S ratios varied considerably across the sites and ranged from 3.0–10.4, 32.5–87.7, and 5.0–18.8, respectively. Microbial biomass S was linearly related to biomass C and biomass N. The regression accounted for 96.6% for biomass C and 92.9% for biomass N of the variance in the data. The amounts of biomass C, N, and S were positively correlated with a number of soil properties, particularly with the contents of organic C, total N, SO₄-S, and electrical conductivity and among themselves. The soil properties, in various linear combinations showed a variability of 84–97% in the biomass nutrients. Stepwise multiple regression indicated that biomass C, N, and S were also dependent on SO₄-S as a second factor of significance which could limit microbial growth under the conditions prevailing at the study sites. Annual flux of Nand S was estimated through the biomass using the turnover rates of 0.67 for Nand 0.70 for S to be approximately 129 kg Nand 9.7 kg S ha^-1 y^-l, respectively, and was almost two times higher in grassland than arable soils.     

Studies on performance of rice as influenced by drainage in Eastern India

Field experiments were conducted in WTCER research farm, Mendhasal and in the farmer's field at Bishwanathpur, Orissa, India, during two crop years to assess the performance of rice as influenced by drainage at different growth stages. In the first experiment, scented rice variety CR-689-113 was tested with drainage at different growth stages in the main plot and nitrogen levels in the sub plots. In the second experiment, rice variety Swarna was investigated and drainage at different growth stages was provided under the best nitrogen level. The results revealed that drainage at the tillering stage recorded significantly higher grain yield than drainage at all other crop stages. The grain yield of rice was found to be increased by 19–22% when drainage was provided at the tillering stage for an 8–10 day period relative to that of no drainage treatment. However, drainage at the panicle initiation stage recorded the lowest grain yield. Nitrogen at 60 kg ha^?1 resulted in higher grain yield. Crop growth rate and nitrogen use efficiency were found to be higher when drainage was given at the tillering stage.