Nucleotide sequencing, whitefly transmission, and screening tomato for resistance against two newly described begomoviruses in bangladesh

ABSTRACT The molecular diversity of Tomato leaf curl viruses (ToLCVs), from the two main tomato growing areas of Jessore and Joydebpur, Bangladesh, was investigated. The viral DNA was amplified from tomato plants exhibiting mild and severe symptoms by polymerase chain reaction, and the complete genomes of the ToLCVs were sequenced. An isolate of the bipartite Tomato leaf curl New Delhi virus-Severe (ToLCNDV-Svr) was associated with the severe symptom phenotype from Jessore (ToLCNDV-Svr[Jes]). A previously undescribed monopartite virus, designated Tomato leaf curl Joydebpur virus-Mild (ToLCJV-Mld), was sequenced from plants showing mild symptoms. ToLCNDV-Svr[Jes] was most closely related to ToLCNDV-[Lucknow] at 95.7% nucleotide (nt) identity and Tomato leaf curl Gujarat virus-[Varanasi] at 90.6% nt identity, based on DNA-A and -B component sequences. ToLCJV-Mld was similar to Pepper leaf curl Bangladesh virus at 87.1% DNA-A nt identity. Identification of ToLCNDV-Svr[Jes] and ToLCJV-Mld was in addition to the previously described Tomato leaf curl Bangladesh virus, with which they shared 73.2 and 86.0% DNA-A nt identities, thus demonstrating the existence of at least three distinct viruses infecting tomato in Bangladesh. Nucleotide identities and placement in phylogenetic trees suggested that the three ToLCVs may have had different evolutionary pathways. The whitefly, Bemisia tabaci, transmitted the viruses of this study equally efficiently. Four tomato cultivars (TLB111, TLB130, TLB133, and TLB182) resistant/ tolerant to South Indian ToLCV were screened against the Bangladesh ToLCVs in 2003-04. Although challenged by diverse viruses and potentially mixed infections, disease incidence remained low (6 to 45%) in the resistant cultivars compared with local cultivars (68 to 100%).     

Systemic Immunosuppression by Methylprednisolone and Pregnancy Rates in Goats Undergoing the Transfer of Cloned Embryos

The presence of the zona pellucida has been perceived as a requirement for the oviductal transfer of cloned embryos at early stages of development while protecting the embryo from an immune system response. We hypothesized that steroid hormone therapy could reduce a potential cellular immune response after the transfer of zona‐free cloned embryos into the oviduct of recipient female goats. In Experiment 1, seven does were used to study the systemic immunosuppressant effect of the methylprednisolone administration (for 3 days) on blood cell counts. Whole blood was collected prior to treatment with methyprednisolone and then on Days 1, 2, 3, 4, 7, 14, 21 and 28 after the first dose of methylprednisolone for the analysis of haematological parameters. Methylprednisolone treatment significantly reduced circulating white blood cells and neutrophils in comparison with pre‐treatment levels, demonstrating a systemic immunosuppressant effect. In Experiment 2, a group of 58 does were used as recipient females to study the effect of administration of methylprednisolone for 3 days on the establishment of pregnancies after the transfer of zona‐free cloned embryos into the oviducts. No effects on pregnancy rates on Day 30 were observed regarding the distinct treatment groups (control vs. methylprednisolone), the source of oocytes (in vivo‐ vs in vitro‐matured) or the presence or absence of the zona pellucida in embryos. In summary, methylprednisolone was effective at inducing a systemic immunosuppressed state in goats, but the treatment prior to embryo transfer did not affect pregnancy rates. Moreover, pregnancy rates were similar between zona‐free and zona‐intact goat cloned embryos.     

Synteny and collinearity in plant genomes

Correlated gene arrangements among taxa provide a valuable framework for inference of shared ancestry of genes and for the utilization of findings from model organisms to study less-well-understood systems. In angiosperms, comparisons of gene arrangements are complicated by recurring polyploidy and extensive genome rearrangement. New genome sequences and improved analytical approaches are clarifying angiosperm evolution and revealing patterns of differential gene loss after genome duplication and differential gene retention associated with evolution of some morphological complexity. Because of variability in DNA substitution rates among taxa and genes, deviation from collinearity might be a more reliable phylogenetic character.     

Retrieval of irrigated and rainfed crop data using a general maximum entropy approach

This paper presents a method to separate harvested area and yield for irrigated crops from rainfed crops in a region, given gross harvested area and yield, and climatic, agronomic and economic data for crops. The method is based on the principle of general maximum entropy, which combines incomplete data, empirical knowledge and a priori information to derive desired information. The model is applied to three large basins with aggregated climatic and agricultural conditions, and to five counties in Texas and California. The modeled results and assessed values in these study areas are compared. While the dependability of model outputs relies on empirical knowledge and judicious parameter estimation, the model remains reliable even for the significant level of uncertainty produced by subjectively predetermined major parameters. The model can be applied to retriving historical data for irrigated and rainfed crops; it can also be used for irrigated and rainfed agriculture planning based on climatic and technological projections. Moreover, the model provides other useful information, including water allocation by crop, water use efficiency and the impact of other agricultural inputs.     

Arsenic chemistry in a groundwater aquifer from the Eastern Province of Saudi Arabia

Groundwater samples were collected from shallow aquifers underneath an industrial complex in the Eastern Province of Saudi Arabia. Arsenic (As) concentrations in the groundwater samples varied between 10^?8.6 and 10^?6.8 M (0.18 and 11.14 µg L^?1), with an average of 10^?7.5 M (2.19 μ L^?1). The analysis of variance for the analytical data showed that sampling locations had significantly affected As concentrations in the groundwater samples. Analytical and thermodynamic calculations showed that H₂ASO₄ ^? was the most predominant As species in acidic groundwater samples, and HAsO₄ ^2? was the most abundant species in alkaline groundwater samples. Concentrations of H₃AsO₄° and AsO₄ ^3? were too low to be important in this study. Reduced As chemical forms were also expected to be very low. All the groundwater samples were undersaturated with respect to the thermodynamic solubility isotherms of Ca₃(AsO₄)₂(c), Fe₃(AsO₄)₂(c), and Mn₃(AsO₄)₂(c) minerals. Lack of reliable thermodynamic data for these arsenates could be responsible for differences between the theoretical and measured concentrations of As in the shallow groundwater samples. The general trend in the distribution of HAsO₄ ^2? activities in the groundwater samples was parallel to that of the Ca₃(AsO₄)₂ solubility isotherm but different from those of Fe₃(AsO₄)₂(c), and Mn₃(AsO₄)₂(c). These data suggest that As concentrations in the groundwater samples were probably controlled by the precipitation and dissolution of Ca₃(AsO₄)₂ type mineral. A three step hypothesis for As interactions in groundwater/soil system is proposed that combines both solid phase formation and adsorption of As onto the solid colloidal surfaces. This hypothesis is expected to better represent As behavior in groundwater/soil environment.     

Assessment of some soil thermal conductivity models via variations in temperature and bulk density at low moisture range

Simulation of heat transfer in soil under steady and unsteady situations requires reliable estimate of soil thermal conductivity (λ) at varying environmental conditions. In the current work several soil thermal conductivity predicting models including I) de Vries, II) Campbell, III) combined de Vries and Campbell and IV) de Vries-Nobre were evaluated for the four soils of coarse sand, sandy loam, loam and clay loam textured at varying in temperature and bulk density at low moisture range. Thermal conductivities measured by the cylindrical probe method served as the reference for models assessment. Results showed that approximately same thermal conductivities obtained by the five methods at low moisture range (θ ≤ 0.05 m³/m³). Also the de Vries and de Vries-Campbell models produced accurate than Campbell and de vries-Nobre models. The accuracy of the two models increased with soil compaction but decreased with temperature rise. Campbell model showed more reliability at higher (311.16 and 321.16 K) temperatures; but its accuracy declined with soil compaction in current work. It seems that assuming needle shape for the soil particles is far away from the reality whereas assuming spherical shapes may be more realistic and produced more satisfactory prediction of thermal conductivity. The compaction would alter particle arrangement and may increase the contact area of particles; and then make them behave more or less spherical shape.it seems thermal conductivity in solid particles increase via increasing in temperature. Since a modified mineral shape factor, g_m, was developed as a combination between sphere and needle according to geometric mean particle diameter as well as bulk density and temperature as modifying factors. This factor increased the accuracy of de Vries-Nobre model up to 10.37%. Regarding nonlinear regression model, moisture content, bulk density, temperature and quartz content demonstrated significant effect on soil thermal conductivity in our investigation.     

Phenotypic diversity of durum wheat (<Emphasis Type="Italic">Triticum durum</Emphasis> Desf.) from Jordan

Durum wheat landrace genotypes are disappearing from the main wheat areas in Jordan, because of spreading of new uniform cultivars and the serious reduction in wheat cultivation. This study was conducted to evaluate genetic diversity in durum wheat landraces from Jordan and to identify desirable agronomic traits. Landraces were collected from two target areas: Ajloun and Karak. The collected material was grown under rainfed conditions using an augmented design with five blocks and four repeated check cultivars. Data were collected for 14 morphological and agronomic traits. Phenotypic diversity index (H′) was estimated, and the relationships among accessions were measured using cluster analysis and dendrogram similarity matrix. The results revealed the presence of a wide range of variability among landraces., which possess high levels of variability for biological yield, fertile tillers, number of seeds per spike, seed weight per spike and weight of 1000 seeds. These landraces must be considered as a reservoir of genes that plant breeders need in their wheat improvement programs and should be conserved both ex situ and in situ.     

Replacement of soybean meal with levels of inclusion of soya waste in the diet of growing goats

An experiment was conducted to investigate the effect of replacing soybean meal with soya waste at different levels on intake, digestibility and growth in goats. Eighteen male goat kids with initial body weight (BW) of 13.0 kg were distributed equally to three dietary groups. They were fed Napier grass (Pennisetum purpureum) and concentrate mixture, and each goat was assigned to an individual pen. Soybean meal in the concentrate mixture was replaced with soya waste at 0% (T1), 50% (T2) and 100% (T3) levels in respective dietary groups. These diets were isocaloric and isonitrogenous. Results showed that animals fed T3 diet exhibited higher Napier grass intake than those fed T1 or T2 diet. There was no influence on total intakes of dry matter (DM), organic matter (OM), crude protein (CP), metabolic BW, per cent BW and metabolisable energy by the dietary groups. However, there was an increasing trend on intake and digestibility of neutral detergent fibre (NDF) with increasing levels of soya waste in the diets. Animals fed T3 diet showed higher intake and digestibility of NDF than those fed T1 diet. There was no influence of the dietary groups on digestibilities of DM, OM and CP. Similarly, there was no effect of them on the final BW, total BW gain, daily BW gain, feed conversion ratio and feed cost. Soya waste can replace 100% soybean meal in diets for growing goats, because no change was observed in nutrient intake, digestibility and growth performance; inclusion of soya waste enhanced the intake and digestibility of NDF.

     

Use of egg custard augmented with cod liver oil and Moina micrura on production of freshwater prawn postlarvae

Use of egg custard augmented with cod liver oil (CLO) fed during the day, and of an overnight feed with Moina micrura, were evaluated in terms of its effects on production of freshwater prawn (Macrobrachium rosenbergii) postlarvae (PL). Four levels of CLO (0, 1,3 and 5%) were tested. Significantly higher mean (sd) productions, ranging from 11.27 (1.16) to 13.02 (1.70) PL l^–1, were obtained for larvae fed egg custard enriched with CLO compared with that of 7.83 (1.58) PLl^–1 for larvae fed egg custard without CLO. The development and survival of larval stages were also higher for the CLO diets. The -3 highly unsaturated fatty acid (HUFA) in egg custard increased with increasing CLO level (0–5%). The fatty acid composition of postlarvae reflected the composition of the diet.