小麦衰老相关基因TaSAG39的生物信息学及表达模式分析

半胱氨酸蛋白酶是蛋白质降解过程中的一类水解酶,参与植物的衰老与成熟,在植物生长发育过程中发挥重要作用。基于前期得到的小麦衰老阶段转录组数据中筛选到一个衰老特异的半胱氨酸蛋白酶(SAG39),为了研究TaSAG39基因在小麦衰老过程中发挥的作用,采用生物信息学分析方法和实时荧光定量(qRT-PCR)技术对TaSAG39的基因结构和表达模式进行分析。结果表明,其氨基酸序列与小麦祖先种节节麦、野生二粒小麦以及硬粒小麦亲缘关系最近,含有木瓜蛋白酶亚家族特有的活性位点Cys-His-Asn以及EFNIN结构。TaSAG39-5A、TaSAG39-5B、TaSAG39-5D基因组全长分别为1 455,1 435,1 439 bp,编码序列长分别为1 041,1 050,1 038 bp,均含2个外显子和1个内含子;其编码的蛋白分别由346,349,345个氨基酸组成,分子质量约37 ku,等电点5.53～5.67,为稳定的带负电的亲水性蛋白;主要构成元件为无规则卷曲和α-螺旋,在蛋白质N段含有信号肽,具有保守的Inhibitor＿I29和Peptidase＿C1结构域,含有35～37个磷酸化位点,...     

Characterization of Drought Tolerance in Bread Wheat Genotypes Using Physiological Indices

Wheat (Triticum aestivum L.) is a staple food in many countries and is regarded as a vital source of nutrition. Drought is one the most prevalent limitations to wheat growth and development. Herein a two year study was conducted using 25 diverse wheat genotypes obtained from the gene pool of various research institutes of Pakistan to characterize their drought tolerance using various physiological indices like relative water content (RWC), relative dry weight (RDW), water saturation deficit (WSD), relative water loss (RWL), flag leaf area (LA), chlorophyll content index (CC) and their association with the grain yield (GY). Analysis of variance (ANOVA) indicated the presence of significant amount of differences and genetic diversity among genotypes under study. Correlation analysis exposed positive association of CC and LA with GY. However, RWC was shown to have a highly significant and negative association with WSD and RWL. Principal component analysis (PCA) showed that out of the 7 PCs only 2 were significant having eigenvalues >?1; cumulatively accounting for 88.70% and 73.03% of the total variation under control and drought stress conditions, respectively. Strikingly the results of the PCA biplots and cluster heat map exposed G1 (Barani-17), G2 (Dharabi-11), G3 (Ehsan-16), G4 (Chakwal-50), G17 (Ujala-2016) and G23 (Kohistan-97) as potential drought tolerant genotypes. Selection of the positively associated indices would be fruitful and the tolerant genotypes having drought tolerance potential could be utilized in future wheat breeding programs to develop high yielding and drought tolerant genotypes.

     

Molecular breeding and the impacts of some important genes families on agronomic traits,a review

Genetic Resources and Crop Evolution - Gene identification and evolution and also their impacts on agronomical traits are important variations between related species which are often because of...     

Effects of onion on serum uric acid levels and hepatic xanthine dehydrogenase/xanthine oxidase activities in hyperuricemic rats

The aim of this study was to investigate the effects of onion on serum uric acid levels and hepatic Xanthine Dehydrogenase/Xanthine Oxidase activities in normal and hyperuricemic rats. Hyperuricemia was induced by intraperitoneal injection of 250 mg kg(-1) potassium oxonate in rats. Oral administration of onion at 3.5 and 7.0 mg kg(-1) day(-1) for 7 days was able to reduce serum uric acid levels in hyperuricemic rats with no significant effects on the level of this compound in the normal animals. In addition, onion when tested in vivo on rat liver homogeneities elicited significant inhibitory actions on the Xanthine Dehydrogenase (XDH) and Xanthine Oxidase (XO) activities. This effect resulted less potent than that of allopurinol. However, the hypouricemic effect observed in the experimental animal did not seem to parallel the change in XDH and XO activities, implying that the onion might be acting via other mechanisms apart from simple inhibition of enzyme activities. Such hypouricemic action and enzyme inhibitory activity of onion makes it a possible alternative for allopurinol, or at least in combination therapy to minimize the side-effects of allopurinol, in particular in long-term application.     

State of Urban Nurseries in Bangladesh: A Case Study from the North-Eastern Region

The state of urban seedling nurseries in the north-eastern region of Bangladesh is examined with a focus on production and profitability of the enterprises. Twenty-eight sample nurseries out of the 97 nursery enterprises in Sylhet town were selected at random, and operators personally interviewed. It was found that the entrepreneurs are not highly educated though they believed that a basic level of education is required to understand the management of young nursery stock. Labourers of various employment categories work in the enterprises and their wage is determined by their skill, gender and efficiency. Capital and operating costs vary among the enterprises according to land value, production capacity, infrastructure type and workforce size. Production capacity ranges from 10,000 to 5 M seedlings/year with an average 836,000, though actual average production is only 341,000 seedlings/year. The production cost per seedling ranges from Tk. 4 to 50 while sale value ranges from Tk. 10 to 60. The most frequently sold species are Acacia mangium, Swietenia macrophylla, Tectona grandis, Mangifera indica, Litchi chinensis and Cocos nucifera. Nursery techniques and cultural practices adopted by nursery operators depend on the type of species and its silvicultural requirement. Despite some problems, including lack of suitable land for nursery establishment and inadequate level of technical knowledge for high quality seedling management, it seems that production of tree seedlings is a promising profitable small-scale business in the study area.     

Ecological and economical significance of homestead forest to the household of the offshore island in Bangladesh

An explanatory survey was conducted to assess the contribution of plant diversity to the ecological and socio-economic condition of the rural household in the offshore island of Bangladesh.Assessment was done by means of multistage random sampling.The homestead sizes of the study area were classified into 3 groups viz,large (>0.25 ha),medium (0.05-0.25 ha) and small (<0.05 ha) based on the result obtained from a preliminary survey,and a total of 45 homesteads,15 from each group,were selected randomly for the study.The average annual income from homestead's plant diversity varied from Tk 5730.00 (US$95.5) to Tk 17500.00 (US$291.67).The rural people were mainly dependent on their homegarden for woodfuel and nutritional requirement as forest was unavailable in the island.The rural people here also cultivated the plant species as a safety measure from frequent cyclone.Constraints hindering the development of homestead plantation were identified and suggestions were given such as the adequate supply of seedlings of fast growing native species and conservation of endangered species to meet the demand of the household as well as to keep ecological balance.     

Optimizing nursery diets for post-metamorphic stage black sea bass: Growth performance,body composition,and feed utilization on open-formulated and commercial starter diets

The objective of this study was to optimize nursery diets for post-metamorphic stage black sea bass by evaluating growth performance, whole-body proximate and fatty acid composition, and utilization of University of North Carolina Wilmington (UNCW)-formulated and commercial diets under laboratory conditions. A feeding trial was conducted to compare two UNCW-formulated diets (D1 and D2) for black sea bass (54% crude protein = CP and 14% crude lipid = CL) and two premium, commercial marine finfish fry diets, Otohime (Reed Mariculture Inc., Campbell, CA, CP = 48% and CL = 14%, CD3) and Gemma Diamond (Skretting, Nutreco, Canada, CP = 57%, CL = 15%, CD4). The UNCW-formulated diet 1 (D1) contained high fish meal (FM, 40% of diet), whereas UNCW-formulated diet 2 (D2) replaced 50% FM protein by high-quality poultry by-product meal (PBM) protein. Post-metamorphic stage black sea bass (~0.60 g, d40ph) were stocked in each of sixteen 75-L tanks at a density of 1 fish per L (75 per tank), with four replicate aquaria per treatment. Fish were fed four times per day (0800, 1100, 1400, and 1600 h) to apparent satiation for 30 days. Final body weight (5.70–5.74), specific growth rate (7.40–7.45%/d), and percent body weight gain (834–848%) of fish fed the UNCW-formulated D1 (FM-based) and D2 (FM + PBM-based) were higher (p < .05) than in fish fed the commercial diets CD3 and CD4 (4.66–5.21 g, 6.80–7.15%/d, and 668–756%, respectively). Feed intake (% body weight/d was significantly lower for fish fed commercial diet (CD4) (3.94) compared with fish fed CD3 (4.20), but feed intake for CD3 was not significantly different compared with the UNCW-formulated diets D1 and D2 (4.10–4.12). Feed conversion ratios (0.76–0.82) were significantly higher for fish fed CD3 (0.82) than for fish fed D1 and CD4 (0.76). Survival was high (99–100%) in all diet treatments. Final whole-body crude protein content (15.2 to 15.9% wet basis), moisture (68.9–69.6%), and ash (4.31–4.77%) showed no significant differences; however, whole-body crude lipid was lower in fish fed CD3 (9.67%) than in fish fed the other diets (9.96–10.22%). Final whole-body fatty acid composition reflected the diet composition. Higher feed consumption and growth of fish fed the UNCW-formulated diets were attributed to a more optimal combination of marine (fish, squid, and krill meals), terrestrial plant (soybean meal) protein sources, and the addition of chemo-attractants, which provided both higher nutritional quality and palatability. The study suggests that the species-specific starter diets may improve growth performance and fingerling quality and may therefore lower production costs under intensive nursery conditions.     

Therapeutic Potential of Marine Peptides in Prostate Cancer: Mechanistic Insights

Prostate cancer (PCa) is the leading cause of cancer death in men, and its treatment is commonly associated with severe adverse effects. Thus, new treatment modalities are required. In this context, natural compounds have been widely explored for their anti-PCa properties. Aquatic organisms contain numerous potential medications. Anticancer peptides are less toxic to normal cells and provide an efficacious treatment approach via multiple mechanisms, including altered cell viability, apoptosis, cell migration/invasion, suppression of angiogenesis and microtubule balance disturbances. This review sheds light on marine peptides as efficacious and safe therapeutic agents for PCa.     

A Signature of Three microRNAs Is a Potential Diagnostic Biomarker for Glioblastoma

Background:Glioblastoma is the most common primary malignant neoplasm of the central nervous system. Despite progress in diagnosis and treatment, glioblastoma still has a poor prognosis. This study aimed to examine whether a signature of three candidate miRNAs (i.e. hsa-let-7c-5p, hsa-miR-206-5p, and hsa-miR-1909-5p) can be used as a diagnostic biomarker for distinguishing glioblastoma from healthy brain tissues. Methods:In this study, 50 FFPE glioblastoma tissue samples and 50 healthy tissue samples adjacent to tumor were included. The expression of each candidate miRNA (i.e. hsa-let-7c-5p, hsa-miR-206-5p, and hsa-miR-1909-5p) was measured using RT-qPCR. To show the roles of each miRNA and their biological effects on glioblastoma development and clinicopathological characteristics, in silico tools were used. ROC curves were performed to assess the diagnostic accuracy of each miRNA. Results:Based on the results, hsa-let-7c-5p and hsa-miR-206-5p were downregulated, while hsa-miR-1909-5p was upregulated in glioblastoma tumors compared to healthy samples. No association was detected between the expression of each candidate miRNA and sex. Except for hsa-let-7c-5p, other miRNAs did not correlate with age status. ROC curve analysis indicated that the signature of candidate miRNAs is a potential biomarker distinguishing between glioblastoma and healthy samples. Only hsa-miR-206-5p suggested the association with poor prognosis in glioblastoma patients. Conclusion:Our findings revealed that the signature of three miRNAs is capable of distinguishing glioblastoma tumor and healthy tissues. These results are beneficial for the clinical management of glioblastoma patients.Key Words: Inflammation, Gastric cancer, Gene expression, Pattern recognition receptors, RNA-seq