Multivariate analysis of Prunus subgen. Cerasus germplasm in Iran using morphological variables

Knowledge of relationships among the cultivated and wild species of Cerasus, a subgenus of Prunus L., is important for recognizing gene pools, identifying pitfalls in germplasm collections and developing effective conservation and management strategies. In this study, morphological characterization of wild Cerasus subgenus species naturally growing in Iran, including P. avium L. (mazzard), P. mahaleb L., P. brachypetala Boiss., P. incana Pall., P. yazdiana Mozaff., P. microcarpa Boiss. subsp. microcarpa, P. microcarpa Boiss. subsp. diffusa and P. pseudoprostrata Pojark. and three commercial species, sweet cherry (P. avium L.), sour cherry (P. cerasus L.) and duke cherry (P. × gondouinii Rehd.) was investigated. Twenty-nine variables were recorded in 95 accessions of these species to detect similarities among them. All studied characteristics were showing a high degree of variability, but it was highly pronounced for plant height, leaf characters especially for dimensions and pubescence as well as for petiole and peduncle length. The majority of significant correlation coefficients were found in the characteristics representing plant size and growth habit with leaf size. Principal component analysis was performed for phenotypical diversity determination and grouping of species. Characters with high discriminating values were those related to growth habit, height, compactness, trunk diameter, leaf dimensions, petiole length, leaf tip and serration, flower color, peduncle length, fruit shape and stone shape. Based on the cluster analysis, species included in two main clusters, first those with large structure (sweet, sour and duke cherries, mazzard and mahaleb), second the other species with small structure which might be potentially suitable for rootstock breeding programs. Scatter plot using two first factors also confirmed the grouping by cluster analysis. The conservation of the highly diverse native populations of Iranian wild Cerasus species is recommended.     

Surveillance and characterization of Newcastle disease viruses isolated from northern pintail (Anas acuta) in Japan during 2006-09

A total of 38 Newcastle disease virus (NDV) isolates were obtained from 6060 fecal samples from northern pintail (Anas acuta) ducks collected in the Tohoku district in Japan during 2006-09. One isolate from each sampling location and date was selected for a total of 38 isolates, then 15 of these were characterized for their pathogenicity by mean death time of minimum lethal dose (MDT/MLD) using chicken embryos and by plaque formation on chicken embryo fibroblasts. Furthermore, nine isolates were randomly selected from these 15 isolates, and the fusion protein genes were sequenced to characterize amino acid sequences around the cleavage site. All 15 were confirmed to be nonvirulent by MDT/MLD test, and nine isolates were also confirmed as nonvirulent by the cleavage site of the fusion protein 112G/E-K/R-Q-G/E-R*L117 that was specific for nonvirulent NDVs. The characteristics of nine isolates identified by phylogenic analysis of the fusion protein gene indicated that the isolates belong to genotype I or II. In addition, we also isolated 68 avian influenza viruses and 28 other hemagglutinating viruses. Our data indicate that northern pintails are subclinically infected by, perpetuate, and distribute NDV along with different subtypes of avian influenza viruses and other hemagglutinating viruses during their migrations across vast areas over the Northern Hemisphere to Japan.     

WHEAT YIELD AND PHOSPHORUS FERTILIZER EFFICIENCY AS INFLUENCED BY PRE-INCUBATED USE OF SINGLE SUPERPHOSPHATE AND POULTRY LITTER AND ITS TIME OF APPLICATION

In an effort to improve phosphorus (P) fertilizer efficiency on alkaline calcareous soils, the effect of period of pre-incubation of single superphosphate along with poultry litter and its time of application on phosphorous efficiency and yield of wheat was studied in a net house pot experiment. The results showed that application of 3–21 days pre-incubated single super phosphate + poultry litter resulted in higher phosphorous fertilizer efficiency and produced significantly higher dry matter yield of wheat at vegetative stage of growth. At maturity, however, maximum grain yield and highest phosphorous fertilizer efficiency was recorded for seven-days pre-incubation treatment only as compared to the recommended method of single super phosphate alone application at sowing. Application of pre-incubated single super phosphate + poultry litter at first irrigation also produced grain yield equivalent to single super phosphate applied alone at sowing. Under field conditions, top-dressing pre-incubated 22 and 44 kg phosphorous (as single super phosphate) along with 1 ton of poultry litter ha^?1 at first irrigation improved phosphorous uptake by 16.4 and 18.7%, phosphorous fertilizer efficiency by 65 and 58% and the grain yield of wheat by 13.4 and 12.5%, respectively as compared to phosphorous alone application at the same time.     

Alleviation of manganese toxicity and manganese-induced iron deficiency in barley by additional potassium supply in nutrient solution

Barley plants were grown hydroponically at two levels of K (3.0 and 30 mm) and Fe (1.0 and 10 μm) in the presence of excess Mn (25 μm) for 14 d in a phytotron. Plants grown under adequate K level (3.0 mm) were characterized by brown spots on old leaves, desiccation of old leaves, interveinal chlorosis on young leaves, browning of roots, and release of phytosiderophores (PS) from roots. These symptoms were more pronounced in the plants grown under suboptimal Fe level (1.0 p,M) than in the plants grown under adequate Fe level (10 μm). Plants grown in 10 μm Fe with additional K (30 mm) produced a larger amount of dry matter and released less PS than the plants grown under adequate K level (3.0 mm), and did not show leaf injury symptoms and root browning. On the other hand, the additional K supply in the presence of 1.0 μM Fe decreased the severity of brown spots, prevented leaf desiccation, and increased the leaf chlorophyll content, which was not sufficient for the regreening of chlorotic leaves. These results suggested that the additional K alleviated the symptoms of Mn toxicity depending on the Fe concentration in the nutrient solution. The concentration (per g dry matter) and accumulation (per plant) of Mn in shoots and roots of plants grown in 10 μm Fe and 30 mm K were much lower than those of the plants grown in 10 μm Fe and 3.0 mm K, indicating that additional K repressed the absorption of Mn. The concentration and accumulation of Fe in the shoots and roots of the plants grown in 10 μm Fe and 30 mm K were higher than those of the plants grown in 10 μm Fe and 3.0 mm K, indicating that the additional K increased the absorption of Fe under excess Mn level in the nutrient solution. The release of PS, chlorophyll content, and shoot Fe concentration were closely correlated.     

Diurnal variations in absorption and translocation of a ferrated phytosiderophore in barley as affected by iron deficiency

The release of phytosiderophore (PS) from roots of Fe-deficient graminaceous plants follows a distinct diurnal rhythm with maximum release rates occurring usually 3 to 4 hours after the onset of light. However, it remains to be determined whether absorption of the PS-Fe³⁺ complex shows a diurnal rhythmicity similar to that of PS release, Barley plants grown with or without 10 µM FeEDTA for 7 days were fed with ferreted PS (10 µM labelled with ⁵⁹Fe) at 4-h intervals to study the diurnal variations in the absorption and transloca tion of ⁵⁹Fe, The absorption of ⁵⁹Fe, irrespective of the Fe nutritional status of the plants, was higher during the day and lower during the night but did not show any peak throughout the day-night cycle. On the other hand, the translocation of ⁵⁹Fe into shoots of Fe-deficient plants was lower than that of Fe-sufficient plants, while the Fe nutritional status of the plants did not affect the absorption of ⁵⁹Fe by roots, The formation of root apoplastic ⁵⁹Fe was lower during the day and higher during the night, regardless of the Fe nutritional status of plants. Our results showed that the absorption of the PS-Fe³⁺ complex by roots did not follow the PS release pattern.     

Effectiveness of Phytosiderophore in Absorption and Translocation of 59Iron in Barley in the Presence of Plant-Borne,Synthetic, and Microbial Chelators

The mechanisms of iron (Fe) absorption and translocation in plants have received much study because they are the key processes in the supply of Fe to plants. The objective of this research was to study the effectiveness of phytosiderophore (PS) in the absorption and translocation of ⁵⁹Fe in Fe-deficient barley (Hordeum vulgare L. cv. ‘Minorimugi’) plants in the presence of plant-borne, synthetic, or microbial chelators. Plants grown under Fe-deficient conditions in a phytotron at pH 5.5 for 7–18 d were fed with Fe³⁺ (10 μ M labeled with ⁵⁹Fe) in the presence of 10 μ M of different chelators with or without 10 μ M PS for 4 h starting at 2 p.m. (6 h after the onset of light period). The absorption and translocation of ⁵⁹Fe in plants treated with PS and Fe^{3 +} were increased relative to plants fed solely with Fe^{3 +} (control). There was no effect found on absorption and translocation of ⁵⁹Fe in plants treated with EDTA or p-coumarate relative to the control, but a differential increase was observed in ⁵⁹Fe absorption and translocation in plants treated with EDTA or p-coumarate in the presence of PS. In comparison with the control, a decrease in ⁵⁹Fe absorption and translocation was observed in plants treated with HEDTA or EDDHA or FOB, but this decrease was avoided in plants treated with HEDTA or EDDHA or FOB in the presence of PS. The enhancement of ⁵⁹Fe absorption and translocation in plants treated with citrate, and the highest ⁵⁹Fe absorption and translocation in plants treated with citrate and PS, indicated that citrate had an additive effect on Fe absorption and translocation in plants. Our results showed that PS effectively played a role in Fe absorption and translocation in plants in the presence of other chelators. Plants treated with any chelators had lower extracellular ⁵⁹Fe in the roots compared with the control.     

Investigation of Yacon Leaves (Smallanthus sonchifolius) for α-Glucosidase Inhibitors Using Metabolomics and In Silico Approach

Yacon (Smallanthus sonchifolius (Poepp.) H. Robinson) leaves is traditionally consumed as herbal tea in many countries including Indonesia. This plant’s antidiabetic properties have been extensively researched, but studies on the responsible active compound identification are scarce. Information on the active compounds is critical for the consistency of Yacon herbal tea quality. The aim of this study was to identify α-glucosidase inhibitors in Indonesian Yacon leaves grown in two different locations using FTIR- and LC–MS/MS-based metabolomics in combination with in silico technique. Yacon leaves ethanol (50 and 95%) and water extracts were tested for α-glucosidase inhibitory activity, with the 95% ethanol extract being the most active. Geographical origins were found to have no major impact on the activity. In parallel, chemical profile of Yacon leaves extract was determined using FTIR and LC–MS/MS. Orthogonal Projection to Latent Structure (OPLS) was used to analyze both sets of data. OPLS analysis of FTIR data showed that compounds associated to α-glucosidase inhibitor activity included those with functional groups –OH, stretched CH, carbonyl, and alkene. It was consistent with the result of OPLS analysis of LC–MS/MS data, which revealed that based on their VIP and Y-related coefficient value, nystose, 1-kestose, luteolin-3′-7-di-O-glucoside, and 1,3-O-dicaffeoilquinic acid isomers, strongly linked to Yacon’s α-glucosidase inhibitor activity. In silico study supported these findings, revealing that the four compounds were potent α-glucosidase inhibitors with docking score in the range of ? 100.216 to ? 115.657 kcal/mol, which are similar to acarbose (? 115.774 kcal/mol) as a reference drug.

Graphical abstract

     

Greenhouse production of potato (Solanum tuberosum L. cv. Désirée) seed tubers using in vitro plantlets and rooted cuttings in large propagation beds

Summary Seed tuber production fromin vitro potato plantlets and cuttings was conducted in large propagation beds in a greenhouse. Propagules of wholein vitro plantlets (WIP), plantlets with apical (ACR) and lateral (LCR) cuttings removed, the rooted apical cuttings (RAC) and rooted lateral cuttings (RLC) were planted at three densities of 25, 49 and 100 plants per m². The plantlets from which cuttings were removed (ACR and LCR) produced more tubers than the rooted cuttings (RAC and RLC); however, the most tubers were produced by WIP. RAC produced highest tuber yields followed by WIP and RLC. Intact WIP and plantlets with cuttings removed (ACR and LCR) produced twice as many tubers <40 g as those from rooted cuttings (RAC and RLC). The yield (kg/m²) as well as the number of tubers per m² increased with the increasing planting density within the densities tested.     

Comparison study of therapeutic results of closed tibial shaft fracture with intramedullary nails inserted with and without reaming

Tibia fractures are the most common type of long bone fractures in US. This study aimed at comparing the therapeutic results of closed tibial shaft fracture with intramedullary nails inserted with and without reaming. In this randomized clinical trial study, 60 patients with a fracture of the tibia were examined. The patients were randomly divided into two groups. Thirty patients treated through inserting intramedullary nail with reaming technique (group A). The other 30 patients treated through inserting intramedullary nail without reaming technique (group B). After operation physical examination and control radiography were taken up to 6 month and results were compared. Sixty patients suffering from closed tibial diaphysis fractures were studied. Mean age of the group A and B were 40.24 +/- 12.32 and 38.42 +/- 14.28, respectively. Group A consisted of 24 (80%) males and 6 (20%) females while group B consisted of 24% females and 76% males. Considering fracture based on OTA criteria (p = 0.4) and severity of soft tissue damage based on Tscherne classification (p = 0.6), there was no statistically meaningful difference between groups A and B. The study demonstrated that degree of horizontal displacement, mean time of surgery, post-operation infection, organ shortness at the end of the follow-up period, organ deviation in patients of the group A was significantly more than that of the group B. Time required for callus formation (mean time of union), mean time of full weight bearing time and mean time of return to normal activities in group B was significantly more than that of the group A.