Single nucleotide polymorphisms in candidate genes are significantly associated with resistance to Haemonchus contortus infection in goats

Background: Haemonchosis is a major economic problem in goat production in humid, tropical and subtropical regions. The disease is caused by an abomasal nematode, Haemonchus contortus, which is highly pathogenic in small ruminants. The aim of this study was to identifying single-nucleotide polymorphisms(SNP) that were associated with fecal egg counts(FEC) and could be used as markers to identify resistance to H. contortus in goats.Results: Ten novel variants in the CI TA, ATP2 A3, HSPA8, STAT5 B, ESYT1, and SERPING1 genes were associated with FEC in goats with a nominal significance level of P 0.05. Two missense mutation in the exon region of the caprine CI TA gene resulted in replacement of arginine with cysteine at position 9473550(R9473550 C) and aspartic acid with glutamic acid at position 9473870(D9473870 E). Chinese goat breeds had significantly higher FEC than Bangladeshi goat breeds within their respective genotypes. Polymorphism information content(PIC), effective al ele number(Ne), and heterozygosity(He)were greatest for the STAT5 B_197_A G SNP locus in al goat breeds. Pairwise coefficients of linkage disequilibrium(D′, r~2)revealed complete LD(r~2= 1) between significant SNP polymorphisms in CI TA and SERPING1 and strong LD(r~2= 0.93 and0.98) between polymorphisms in HSPA8 and ATP2 A3, respectively. Correlation coefficient(r) between FEC and body weight(BW) was significantly positive(r = 0.56***, P 0.001) but that between FEC and packed cel volume(PCV) was negatively significant(r =-0.47**, P 0.01) in the total population of goats. On the other hand, correlation coefficient(r)between BW and PCV was not significant in total population of goats. Association analysis revealed that haplotypes within ATP2 A3, HSPA8, and SERPING1 were significantly associated with FEC. Quantitative real-time PCR revealed that the relative expression of m RNA was higher(P 0.001) for resistant, compared to susceptible, groups of goats for al candidate genes except CI TA.Conclusions: This study identified SNP markers that can potential y be used in marker-assisted selection programs to develop goat breeds that are resistant to H. contortus.     

Radioimmunoassay of milk progesterone as a tool for fertility control in smallholder dairy farms

This study focused on the use of radioimmunoassay of progesterone in milk for the diagnosis of post-partum ovarian cyclicity and accurate detection of oestrus and non-pregnancy in cows in the artificial insemination (AI) programme in Bangladesh. In Investigation 1, milk samples were collected on day 0 (day of AI), day 9–13 and day 21–24 from 444 milking cows of various breeds presented for the first post-partum insemination by 413 farmers living at 182 villages/regions in Mymensingh District from 6 AI centres and sub-centres. Each cow was then examined three times after each AI until it stopped returning to oestrus. Sixty to 90 days after the last AI, the cows were examined per rectum to confirm the pregnancy. Milk progesterone data on day 21–24 contributed to a clear diagnosis with respect to non-pregnancy in 100% cows, indicating a possible use of this progesterone assay for identifying non-pregnant cows in AI programmes. In Investigation 2, milk progesterone was monitored two times in a month with a 10-day interval in 88 cows. The samples were taken between 10 days after calving and the first detected oestrus, followed by two more samples 10 days apart. The proportion of cows accurately detected in oestrus was 30%. Another 30% were stated to be in oestrus when they were not (false positive) and 40% were not detected when they were in oestrus (false negative). The mean intervals between calving and oestrus and between calving luteal activity were 40 to 362 days (median = 120, n = 82) and 34 to 398 (median = 111, n = 64) days, respectively. The body condition scores at calving and at the initiation of luteal activity influenced the interval between calving and luteal activity (p < 0.05). Cows suckled twice daily initiated luteal activity earlier than their counterparts suckled several times daily (p < 0.05). Determination of progesterone in milk on day 21–24 is a good means for detecting non-pregnant cows.     

Anti-inflammatory and analgesic potential of a novel steroidal derivative from Bryophyllum pinnatum

A new steroidal derivative, urs Stigmast-4, 20 (21), 23-trien-3-one and other four compounds were isolated from the leaves of Bryophyllum pinnatum. The structure of this new steroid was elucidated and established by standard spectroscopic methods. Carrageenan induced paw edema model was used for anti-inflammatory and acetic acid induced model used for analgesic activity. This new steroidal compound was found to be active in reducing inflammation (% inhibition 87.29 and 84.45 respectively) when compared with diclofenac. Further, it showed 75.72% protection in analgesic activity in acetic acid induced writhing test in mice. In conclusion the % inhibition against carrageenan induced rat paw edema and % protection against acetic acid induced writhings showed by new compound revealed that the anti-inflammatory and analgesic activity of aqueous extract B. pinnatum are mainly due to the presence of this steroidal compound.     

Predictive models for biomass and carbon stocks estimation in Grewia optiva on degraded lands in western Himalaya

Grewia optiva Drummond is one of important agroforestry tree species grown by the farmers in the lower and mid-hills of western Himalaya. Different models viz., monomolicular, logistic, gompetz, allometric, rechards, chapman and linear were fitted to the relationship between total biomass and diameter at breast height (DBH) as independent variable. The adjusted R² values were more than 0.924 for all the seven models implying that all models are apparently equally efficient. Out of the six non-linear models, allometric model (Y = a × DBH ^b ) fulfils the validation criterion to the best possible extent and is thus considered as best performing. Biomass in different tree components was fitted to allometric models using DBH as explanatory variable, the adjusted R² for fitted functions varied from 0.872 to 0.965 for different biomass components. The t values for all the components were found non-significant (p > 0.05), thereby indicating that model is valid. Using the developed model, the estimated total biomass varied from 6.62 Mg ha^?1 in 4 year to 46.64 Mg ha^?1 in 23 year old plantation. MAI in biomass varied from 1.66–2.05 Mg ha^?1 yr^?1. The total biomass carbon stocks varied from 1.99 Mg ha^?1 in 4 year to 15.27 Mg ha^?1 in 23 year old plantation. Rate of carbon sequestration varied from 0.63–0.81 Mg ha^?1 yr^?1. Carbon storage in the soil up to 30 cm soil depth varied from 25.4 to 33.6 Mg ha^?1.     

Antimicrobial activity and cytotoxicity of Aerva lanata

Aerva lanata whole plant showed interesting antimicrobial activities (ethyl acetate and methanol extracts) and significant cytotoxic properties (petroleum ether, ethyl acetate and methanol extracts).     

Homestead forest resources and their role in household economy: A case study in the villages of Gazipur Sadar Upazila of central Bangladesh

This study examines the species composition, diversity and economic importance of homestead forests in the household economy of central Bangladesh. The study documents 57 homestead forest species and their main usage in 90 households across three villages of Gazipur Sadar Upazila. Homestead forests in Bangladesh comprise a mixture of fruit, timber and bamboo species. While superficially homestead forestry appears unimportant in rural livelihoods, in reality the contribution is huge, both as a source of food security and for other necessary household materials. A clear understanding of the physical characteristics and economic role of homestead forests in rural livelihoods is vital for ensuring sustainable resource management. Income and production of homestead forestry on a per hectare basis are found to vary widely between landholding size classes. Significant relationships are identified between forest performance (production and income) and species richness and education level. Homestead forestry appears to be a potential subsistence income generating land-use practice in the study area. The economic scope of homestead forestry can be further enhanced provided the appropriate species composition of the forest is achieved and the education of forest owners is ensured through targeted management and policy interventions.     

Perceptions,Preferences, and Attitude of Bangladesh Farmers Towards Homegarden Farming Systems

An empirical study was conducted of the attitudes, perceptions and preferences of owners of homegardens in Bangladesh. A wide spectrum of opinions regarding various agroforestry issues was observed. Landholders were found to maintain their homegardens mainly for subsistence, although some additional family income was derived from selling surplus products. Due to lack of scientific knowledge the growing stock of homegardens was not of high quality. Seedlings were mostly preferred to other planting materials. Mango was accorded the highest ‘preference ranking’ among the available species. The farmers expected a number of external support measures, including high quality planting materials, assured credit facilities, and access to state-of-the-art management knowledge. It was concluded that various perceptions, preferences and attitude of the farmers would provide a framework for future policy formulation, preparation of homegarden management plans and development of homegardens in the study area and more generally in Bangladesh.     

Diversity and structural composition of species in dipterocarp forests: a study from Fasiakhali Wildlife Sanctuary,Bangladesh

Fasiakhali Wildlife Sanctuary is a protected area composed of tropical remnant rainforest that harbor substantial number of large,old Garjan(Dipterocarpus spp.)trees.The present study assessed composition,structure and diversity of the species in this protected area.A total of 32 trees species were recorded with DBH ≥ 11 cm belonging to 24 genera and 19 families.The forest is low in plant diversity as represented by Shannon–Wiener diversity and Simpson Dominance indices.Dipterocarpus turbinatus was the most dominant species with maximum relative density,frequency,dominance,and importance value index.Syzygium firmum and Tectona grandis followed in terms of dominance.The structural composition indicated higher number of individuals in the medium growth classes(41 to 511 cm DBH and 16–20 m height ranges),whereas D.turbinatus was the only species that dominated most of the growth classes.Poor stem density in lower growth classes indicated meager recruitment of regeneration which may be due to lower annual precipitation,increased grazing and encroachments.This study will help to understand the patterns of tree species composition and diversity in the remnant dipterocarp forests of Bangladesh.It will also contribute to identifying threatened plants to undertake D.turbinatus based conservation and sustainable management of the Fasiakhali Wildlife Sanctuary.     

Pre-sowing treatments for improved germination and growth of two rare native species of Bangladesh

Pre-sowing treatments are expected to increase seed germination. This evaluates response to pre-sowing treatments and the growth performance of two native and rare tree species, Garuga pinnata Roxb. and Vitex glabrata R. Br. The hard seed coats were treated by rubbing with sand paper, nail clipping, and immersion in water and acid (H₂SO₄). Results indicate that G. pinnata showed a 90% germination rate and 30% germination energy when seed coats were nicked with a nail clipper. Rubbing with sand paper was the best pre-sowing treatment for V. glabrata, resulting a 80% germination rate and 30% germination energy. G. pinnata and V. glabrata seedlings from seeds soaked 24 h in water resulted in maximum heights and collar diameters. These were significantly higher (at p < 0.05) than those of other treatments. The results indicate that scarification or nicking of seeds may have some negative impacts on seedling growth. Therefore, it is difficult to recommend a pre-sowing treatment of seeds for achieving both maximum germination and good early seedling growth.     

Malaysianol B,an oligostilbenoid derivative from Dryobalanops lanceolata

A new oligostilbenoid tetramer, malaysianol B (1), was isolated from the acetone extract of the stem bark of Dryobalanops lanceolata along with seven oligostilbenoids tetramers; hopeaphenol (2), stenophyllol A (3), nepalensinol B (4), vaticanol B (5) and C (6), upunaphenol D (7), and flexuosol A (8). The structures of the isolated compounds were established on the basis of their spectroscopic data evidence. The antibacterial activity of the isolated compounds was evaluated using resazurin microtitre-plate assay.