Quinone Binding Sites of Membrane Proteins as Targets for Inhibitors

Quinones are a central component of most photosynthetic and respiratory electron transfer chains. The proteins that reduce and oxidise these quinones have quinone binding sites—Q sites—that are good targets for pesticides. This paper reviews the diversity of these sites, their possible structure, and the types of compounds that act upon them.     

Using the RUSLE to identify factors controlling erosion rates of mine soils

Observable differences in particle size, smoothness and compaction between cap site (slope 2·8 per cent) and batter site (slope 20·7 per cent) surfaces on the waste rock dump at Ranger Uranium Mine were quantified in terms of revised universal soil loss equation (RUSLE) parameter values. Cap site surface material had a K_m (erodibility corrected for sediment density) of 0·030 and batter site surface material had a K_m of 0·0056. Using these K_m values (derived from particle size distributions), slope length and steepness (LS) factors of 0·36 for the cap site and 3·66 for the batter site, and a cover (C) factor of 0·45 for the cap site and 0·16 for the batter site, the RUSLE predicts an erosion rate from the cap site that is 1·9 times greater than erosion from the much steeper batter site. The RUSLE indicates that the finer particle size and blocky soil structure of the cap site (D₅₀ = 0·91 mm) compared with the looser granular structure of the batter site (D₅₀ = 1·74 mm) strongly influence erosion. The predictions are similar to observed soil losses from erosion plots on these sites under rainfall simulation events, for which the measured erosion rate from the cap site was approximately twice that from the batter site. For the RUSLE to predict the observed erosion rates, the support practice (P) factor for the cap site would have to be approximately 30 per cent greater than the P factor for the batter site. The higher cap site P factor probably results from smoothing and compaction caused by vehicle movement across the surface. Compaction is considered to have greatly reduced infiltration capacity, thus increasing the erodibility of the cap site. Vehicles probably also crushed the surface material at the cap site, creating the observed finer particle size distribution and further increasing the erodibility. Compaction, through its effects on erodibility (K_m) and surface roughness (P), is concluded to be the major cause of higher erosion from the cap site, even though the slope steepness is 10 times less. Parameterisation of the RUSLE quantifies the differences between sites and explains the unexpected erosion rates observed. The results highlight the need for careful management of rehabilitated sites to avoid increases in erosion which may arise from compaction by machinery.     

NMR-Based Configurational Assignments of Natural Products: Gibbs Sampling and Bayesian Inference Using Floating Chirality Distance Geometry Calculations

Floating chirality restrained distance geometry (fc-rDG) calculations are used to directly evolve structures from NMR data such as NOE-derived intramolecular distances or anisotropic residual dipolar couplings (RDCs). In contrast to evaluating pre-calculated structures against NMR restraints, multiple configurations (diastereomers) and conformations are generated automatically within the experimental limits. In this report, we show that the “unphysical” rDG pseudo energies defined from NMR violations bear statistical significance, which allows assigning probabilities to configurational assignments made that are fully compatible with the method of Bayesian inference. These “diastereomeric differentiabilities” then even become almost independent of the actual values of the force constants used to model the restraints originating from NOE or RDC data.     

Enhancement of revegetation on construction fill by fertilizer and topsoil application: Effect on mycorrhizal infection

The influence of topsoil and fertilizer application on denuded road construction sites was evaluated to assess its contribution to improvement of vegetation re-establishment. the study sites were within a mixed hardwood and conifer forest on crushed, unweathered subsurface material with low fertility and low biological activity. Topsoils were removed from the site, stockpiled and reapplied to the site after construction. the effect of topsoil amendment on plant growth, soil fertility, mycorrhizal infection and an index of microbial biomass were measured in field and greenhouse experiments. Plant growth on the topsoil amended field plots were greatly increased relative to treatments with fertilizer but no topsoil. Three years after establishment, dry weight production on the plots without topsoil treatment was about 40 per cent of the plots treated with topsoil. Greenhouse experiments were designed to compare fresh, dried and stockpiled topsoil. These experiments indicated that storage of the harvested topsoil for five months in a stockpile had minor effects on plant growth, soil fertility, mycorrhizal infection and microbial biomass. Topsoil volumes had to exceed 20 per cent of the total soil volume to achieve statistically significant benefits and higher ratios showed greater benefit. the percentage of mycorrhizal infection was greatest in topsoil treatments without fertilizer. the addition of fertilizer increased growth but reduced the percentage of roots forming mycorrhizae. When the total weight of infected roots was calculated, however, infection was found to be greatest with a moderate level of fertilizer (equivalent to approximately 27 kg N ha⁻¹ and 39 kg P ha⁻¹), and was less in both higher fertilizer treatments and in unfertilized treatments. Topsoil amendment increased microbial biomass nitrogen but fertilizer treatment did not.     

Assessing Repeated Oxalic Acid Vaporization in Honey Bee (Hymenoptera: Apidae) Colonies for Control of the Ectoparasitic Mite Varroa destructor

The American beekeeping industry continually experiences colony mortality with annual losses as high as 43%. A leading cause of this is the exotic, ectoparasitic mite, Varroa destructor Anderson & Trueman (Mesostigmata: Varroidae). Integrated Pest Management (IPM) options are used to keep mite populations from reaching lethal levels, however, due to resistance and/or the lack of suitable treatment options, novel controls for reducing mites are warranted. Oxalic acid for controlling V. destructor has become a popular treatment regimen among commercial and backyard beekeepers. Applying vaporized oxalic acid inside a honey bee hive is a legal application method in the U.S., and results in the death of exposed mites. However, if mites are in the reproductive stage and therefore under the protective wax capping, oxalic acid is ineffective. One popular method of applying oxalic is vaporizing multiple times over several weeks to try and circumvent the problem of mites hiding in brood cells. By comparing against control colonies, we tested oxalic acid vaporization in colonies treated with seven applications separated by 5 d (35 d total). We tested in apiaries in Georgia and Alabama during 2019 and 2020, totaling 99 colonies. We found that adult honey bees Linnaeus (Hymenoptera: Apidae), and developing brood experienced no adverse impacts from the oxalic vaporization regime. However, we did not find evidence that frequent periodic application of oxalic during brood-rearing periods is capable of bringing V. destructor populations below treatment thresholds.     

Impact of Honey Bee Migratory Management on Pathogen Loads and Immune Gene Expression is Affected by Complex Interactions With Environment,Worker Life History,and Season

The effects of honey bee management, such as intensive migratory beekeeping, are part of the ongoing debate concerning causes of colony health problems. Even though comparisons of disease and pathogen loads among differently managed colonies indicate some effects, the direct impact of migratory practices on honey bee pathogens is poorly understood. To test long- and short-term impacts of managed migration on pathogen loads and immunity, experimental honey bee colonies were maintained with or without migratory movement. Individuals that experienced migration as juveniles (e.g., larval and pupal development), as adults, or both were compared to control colonies that remained stationary and therefore did not experience migratory relocation. Samples at different ages and life-history stages (hive bees or foragers), taken at the beginning and end of the active season, were analyzed for pathogen loads and physiological markers of health. Bees exposed to migratory management during adulthood had increased levels of the AKI virus complex (Acute bee paralysis, Kashmir bee, and Israeli acute bee paralysis viruses) and decreased levels of antiviral gene expression (dicer-like). However, those in stationary management as adults had elevated gut parasites (i.e. trypanosomes). Effects of environment during juvenile development were more complex and interacted with life-history stage and season. Age at collection, life-history stage, and season all influenced numerous factors from viral load to immune gene expression. Although the factors that we examined are not independent, the results illuminate potential factors in both migratory and nonmigratory beekeeping that are likely to contribute to colony stress, and also indicate potential mitigation measures.     

Verrucosamide,a Cytotoxic 1,4-Thiazepane-Containing Thiodepsipeptide from a Marine-Derived Actinomycete

A new cytotoxic thiodepsipeptide, verrucosamide (1), was isolated along with the known, related cyclic peptide thiocoraline, from the extract of a marine-derived actinomycete, a Verrucosispora sp., our strain CNX-026. The new peptide, which is composed of two rare seven-membered 1,4-thiazepane rings, was elucidated by a combination of spectral methods and the absolute configuration was determined by a single X-ray diffraction study. Verrucosamide (1) showed moderate cytotoxicity and selectivity in the NCI 60 cell line bioassay. The most susceptible cell lines were MDA-MB-468 breast carcinoma with an LD₅₀ of 1.26 µM, and COLO 205 colon adenocarcinoma with an LD₅₀ of 1.4 µM. Also isolated along with verrucosamide were three small 3-hydroxy(alkoxy)-quinaldic acid derivatives that appear to be products of the same biosynthetic pathway.