Analysis of methanogenic archaeal communities of rumen fluid and rumen particles from Korean black goats

Molecular diversity of methanogens in the rumen of Korean black goats was investigated with 16S rRNA gene clone libraries using methanogen‐specific primers. The libraries were composed of rumen fluid‐associated methanogens (FAM) and rumen particle‐associated methanogens (PAM) from rumen‐fistulated Korean black goats. Among the 141 clones of the FAM library, the sequences were mostly related to two phyla, the Methanobacteriaceae family (77.3%) and the Thermoplasmatales family (22.7%); and among the 68 clones of the PAM library, sequences were also mainly clustered in the two phyla, the Thermoplasmatales family (63.24%) and the Methanobacteriaceae family (35.29%). Most of the sequenced clones in the two libraries were closely related to uncultured methanogenic archaeon. Quantitative real‐time PCR revealed that PAM (8.97 log 10) had significantly higher (P < 0.01) density of methanogens by the methanogenic 16S rRNA gene copies than FAM (7.57 log 10). The two clone libraries also showed difference in Shannon index (FAM library 1.70 and PAM library 1.59) and Chao 1 estimator (FAM library 18 and PAM library 17 operational taxonomic units). Apparent differences found in the microbial community from the two 16S rRNA gene libraries could be a result of such factors as the chemical and physical nature of the target material surface, types or component of diets, the interaction between the methanogens and other microbes, and age of the experimental goats.     

Influence of nitrogen application on dry biomass allocation and translocation in two maize varieties under short pre-anthesis and prolonged bracketing flowering periods of drought

Plants have evolved different mechanisms to survive under stress conditions. This field study was conducted to evaluate the influence of nitrogen (N) application on dry biomass allocation and translocation in two maize varieties under short pre-anthesis and prolonged bracketing flowering period of drought. Two maize varieties, ‘Pioneer 30B80? and ‘Suwan 4452? receiving N at 0 (control), 160 (optimal) and 320 (supra-optimal) kg ha^?1 were subjected to short pre-anthesis and prolonged bracketing flowering periods of drought. Prolonged bracketing flowering period of drought had more suppressive effect on anthesis-silking interval, dry matter allocation and translocation, leaf greenness, contribution of current assimilates to grain (CCAG), kernel number, kernel weight and kernel yield of two maize varieties than a short pre-anthesis drought. Nitrogen application at optimal level was the best for all traits, except CCAG. The maize variety ‘Pioneer 30B80? performed better under both drought types due to more root xylem vessels of large size and more accumulation of dry matter in leaves and roots than the variety ‘Suwan 4452?. Therefore, the variety ‘Pioneer 30B80? may be planted in drought prone environments and may be used in breeding program aimed at developing drought-tolerant cultivars.     

Role of active aluminum in the formation of water-stable macroaggregates

Soil structure is determined by the arrangement of particles in soil and the particles of sand, silt, and clay bind together into aggregates of various sizes by organic and inorganic materials. Structural stability which is the ability of the aggregates and pores to remain intact when subjected to stress, markedly affects crop production and soil erosion (Tisdall 1996). Since water, either directly as rainfall or as surface runoff is the main agent of aggregate breakdown, in the analyzes of stable soil aggregation, the term water-stable aggregation is generally used (Lynch and Bragg 1985). Water-stable aggregates have been divided into micro aggregates < 0.25 mm dia.) and macro aggregates (> 0.25 mm dia.) (Edwards and Bremner 1967; Tisdall and Oades 1982). Microaggregates show a relatively high stability against physical disruption (Edwards and Bremner 1967). On the other hand, macro aggregates are sensitive to soil management (Tisdall and Oades 1982).

There are many reports on the relationships between the aggregate stability and the soil physicochemical properties. For example, significant correlations were found between the aggregate stability and the amounts of organic C (Tisdall and Oades 1982), total N, and carbohydrates or the CEC (Chaney and Swift 1984). However, most of these studies were conducted in non-volcanic ash soils. Volcanic ash soils are widely distributed in Japan and are very important soils for crop production. The objective of this study was, therefore, to obtain more information on the relationship between the degree of macro aggregation and the soil physicochemical properties in non-volcanic and volcanic ash soils.     

Attenuation of 12-O-tetradecanoylphorbol-13-acetate (TPA)-induced gap junctional intercellular communication (GJIC) inhibition in MCF-10A cells by c9,t11-conjugated linoleic acid

The protective effect of c9,t11-conjugated linoleic acid (CLA) on the inhibition of gap junctional intercellular communication (GJIC) was examined in a human mammary epithelial cell line (MCF-10A) treated with 12-O-tetradecanoylphorbol-13-acetate (TPA), relative to t10,c12-CLA isomer. TPA inhibited GJIC in a dose-dependent and reversible manner and was associated with connexin 43 phosphorylation. Pretreatment of 20 μM c9,t11-CLA for 24 h prior to 60 nM TPA for 1 h prevented the inhibition of GJIC by reducing the phosphorylation of connexin 43 via suppressing extracellular signal-regulated kinases (ERK1/2) activation. Reactive oxygen species (ROS) accumulation by TPA was attenuated by c9,t11-CLA. The efficacy of c9,t11-CLA in protecting inhibition of GJIC, connexin 43 phosphorylation, and ROS production was superior to that of t10,c12-CLA. These results suggest that c9,t11-CLA, including t10,c12-CLA, prevents the carcinogenesis of MCF-10A cells by protecting down-regulation of GJIC during the cancer promotion stage, and lack of their toxicities could be an excellent indicator for the chemoprevention of breast cancer.     

Effects of iron ore tailings on growth and physiological activities of Tagetes patula L.

Purpose

Ornamentals can beautify the environment and resolve heavy metal pollution at the same time. Thus, the present study aimed at studying the growth and physiological response of Tagetes patula on iron ore tailings.

Materials and methods

Pot-culture experiments were conducted to investigate the effect of iron ore tailings both individually as well as in combination with soil (at different proportions) on the growth, pigment production as well as accumulation and translocation of various heavy metals from the tailings.

Results and discussion

The results suggested an increase in growth, chlorophyll content, as well as metal accumulation capacity of T. patula with increasing proportion of tailings in the soil. Furthermore, an increase in antioxidant activities in plants grown on tailings as compared to control was observed which suggests plant efficiency to overcome any stress generated due to excess of heavy metals. The order of accumulation of various heavy metals in the plant parts was observed to be Fe?>?Cr?>?Zn?>?Cu?>?Pb?>?Ni?>?Cd. Both bioaccumulation and translocation values were maximum for Fe and minimum for Ni and Cd, respectively.

Conclusions

The overall study clearly suggests plant ability to grow well on the tailings and survive excess of heavy metals present in the tailings. Thus, the plant qualifies well as a potential tool for phytostabilization of iron ore tailings and probably a source of income generation from wasteland owing to its multiple commercial values.     

Variation of mineral nutrient contents of modern and heirloom cultivars of cabbage in different regimes of soil fertility

An improvement in the mineral nutrient contents of fruits and vegetables is needed to offset reported declines in concentrations of these elements in fruits and vegetables. The declines have been associated with the high productivity of modern cultivars and to depleted soil fertility. This research addressed differences in mineral nutrient concentrations between modern F1 hybrids and heirloom cultivars of cabbage (Brassica oleraceae var. capitata L.)and among fertilization practices with conventional chemical or organic fertilizers and compost. Crop production was greater with the chemical or organic fertilizers than with the compost. Mineral nutrient composition did not vary between modern or heirloom cultivars or among fertilization regimes but varied among cultivars, suggesting that cultivar selection could lead to production of nutrient-rich cabbage. Neither mass of heads nor days to maturation of crops affected nutrient composition.     

Allelopathic potential and an allelopathic substance in mango leaves

The present study was aimed to determine the allelopathic potential of mango (Mangifera indica L.) leaves and to identify allelopathic substances in the leaves. The aqueous methanol extracts of mango leaves inhibited seedling growth of garden cress, radish, rapeseed, foxtail fescue and crabgrass, and the inhibitory effects increased with the increasing extract concentration, suggesting that mango leaves may contain allelopathic substances. The extract was then purified by several chromatographic runs through a bioassay-directed fractionation, and an growth inhibitory substance was isolated and identified by spectral data as methyl-3,4,5-trihydroxybenzoate (methyl gallate). Methyl gallate at the concentration of 10 mM inhibited 98.6% and 99.8% of root and shoot growth of garden cress relative to the control, respectively, and 94.4% and 49.3% of those of foxtail fescue, respectively. The concentrations of methyl gallate required for 50% growth inhibition (I₅₀) on garden cress roots and shoots were 3.9 and 3.3 mM, and those on foxtail fescue roots and shoots were 1.5 and 9.5 mM, respectively. It is the first report of an allelopathic substance in mango leaves and allelopathic activity of methyl gallate. Therefore, the mango leaves may have potential as a soil additive material for the weed management options.     

Starch Damage and Pasting Properties of Rice Flours Produced by Dry Jet Grinding

Milling method and particle size affect some properties of rice flour. To prepare ultra‐fine rice flour of <30 μm, hammer and dry jet grinding methods were examined and the effect of particle size on starch damage and pasting properties of the flour were elucidated. A jet mill could make finer flour (<10 μm mean size) with a narrower particle size distribution than a hammer mill could. Starch damage increased dramatically at a mean size of <10 μm. Particles of a similar size (<60 μm) had different levels of starch damage between mills. Not only the particle size, but also the milling method affected the level of damaged starch. Flour samples of ≥45 μm mean size had similar viscosity curves, but samples of <20 μm had different curves. Peak viscosity and final viscosity decreased sharply at <10 μm. Setback viscosity for particles of 3 μm from both brown rice and white rice were higher than the peak viscosity. Stability to heat and shearing stress were decreased for <20 μm flours as the breakdown viscosities decreased. Starch damage and pasting properties of flour ground from the nonwaxy japonica cultivar Koshihikari changed dramatically at a mean size of <10 μm.     

Soybean preference for Bradyrhizobium japonicum for nodulation

For examining the probability of increase in the occupation ratio of inoculated rhizobium in nodules, various Rj-soybean cultivars including the Rj ₂ Rj ₃ Rj ₄-lines of soybean were grown in a field of the Kyushu University Farm. Bradyrhizobium japonicum USDA110 that carries uptake hydrogenase (Hup⁺) was used as an inoculum. The relative efficiency of nitrogen fixation generally increased by the inoculation. However, there were no significant differences in the effects among the genotypes of the host plants. The occupation ratio of serogroup USDA110 in the nodules on the taproot of the inoculated plants was in the range of 77–100%, suggesting that the B. japonicum strain USDA110 infected taproots immediately after inoculation. The occupation ratios in the nodules on the lateral roots were 53–67, 40–86, 63–83, and 62–77% in inoculated plants of the non-Rj-, Rj ₂ Rj ₃-, Rj ₄-, and Rj ₂ Rj ₃ Rj ₄-genotypes, respectively, and they decreased in all the genotypes with the progression of growth. At the time of the first sampling, the occupation ratios on the lateral roots of these Rj ₂ Rj ₃ Rj ₄-genotypes showed values intermediate between those of IAC-2 (Rj ₂ Rj ₃) and Hill (Rj ₄) , which were the parent cultivars of the Rj ₂ Rj ₃ Rj ₄-lines, B340, B349, and C242. The reduction in the occupation ratio of the serogroup USDA110 for about 1 month after the first sampling was the lowest (0.13–0.16) in the Rj ₂ Rj ₃ Rj ₄-genotypes, excluding B349, followed by the non-Rj- and Rj ₂ Rj ₃-genotypes and highest (0.52–0.69) in the Rj ₄-genotypes, excluding Hill. Therefore, it was considered that the population of compatible rhizobia with host soybean plants increased in the rhizosphere with the progression of the development and growth. The results showed that with the expansion of the root area of host plants, the occupation ratio of type A rhizobia including the serogroup USDA110 was high. Therefore, the Rj ₂ Rj ₃ Rj ₄-genotypes were superior to other Rj-genotypes in terms of the inoculation effects of nodulation type A rhizobium, B. japonicum USDA110. However, the preference of the Rj ₂ Rj ₃ Rj ₄-genotype for serogroup USDA110 is not sufficient to rule out the competition with the other serogroups in this study. Therefore, the study should be centered on the isolation of more efficient (Hup⁺) and highly compatible rhizobial strains with the Rj ₂ Rj ₃ Rj ₄- genotypes.