Assessment of natural regeneration status and diversity of tree species in the biodiversity conservation areas of Northeastern Bangladesh

A study was conducted at two-biodiversity conservation areas of Northeastern Bangladesh (a part of Sylhet Forest Division) to assess the species composition, diversity and density of natural regeneration of tree species both indigenous and exotic species. Data were collected by stratified random quadrate method during January 2010 to July 2010. Totally 200 circular plots of 2 m×2 m in size had 5 different habitat types of plants namely; forest, roadside, homestead (surrounding forest dwellers house), fallow land and others (canals, streams and tea gardens side), which included a total of 55 regenerating species belonging to 28 families. Meliaceae is the dominant family and shows the highest family importance value (26.3), having six species, followed by Moraceae (24.24). Among the five habitat types, forest (43 species) possess the highest number of species, followed by roadside (23 species). Total 15 exotic species among 9 families and 40 indigenous species with 24 families were recorded. For exotic species, Tectona grandis possess the highest relative density (11.7%) and relative frequency (10.5%); Senna siamea had highest relative abundance (7.83%). In case of indigenous species, Chickrassia tabularis possess the highest relative density (4.23%) and relative frequency (4%); Dipterocarpus turbinatus had the highest relative abundance (3.92%). Tectona grandis (29.66) and Chickrassia tabularis (10.8) had the highest IVI for exotic and indigenous species respectively. Different diversity indices such as Shanon-Winner diversity index, species diversity index, species richness index, species evenness index, Simpson index and species dominance index, etc. were applied to quantify definite diversity. The regeneration of species associated with low levels of disturbance was in the exotic species. Study suggests that proper protection from human disturbances and scientific management of natural regeneration of two-study forests may lead a rich biodiversity site in the country.     

Genetic variability in cultivated common bean beyond the two major gene pools

It is generally accepted that two major gene pools exist in cultivatedcommon bean (Phaseolus vulgaris L.), a MiddleAmerican and an Andean one. Some evidence, based on unique phaseolin morphotypesand AFLP analysis, suggests that at least one more gene pool exists incultivated common bean. To investigate this hypothesis, 1072 accessions from acommon bean core collection from the primary centres of origin, held at CIAT,were investigated. Various agronomic and morphological attributes (14categorical and 11 quantitative) were measured. Multivariate analyses,consisting of homogeneity analysis and clustering for categorical data,clustering and ordination techniques for quantitative data and nonlinearprincipal component analysis for mixed data, were undertaken. The results ofmost analyses supported the existence of the two major gene pools. However, theanalysis of categorical data of protein types showed an additional minor genepool. The minor gene pool is designated North Andean and includes phaseolintypes CH, S and T; lectin types 312, Pr, B and K; and mostly A5, A6 and A4 types-amylase inhibitor. Analysis of the combined categorical data ofprotein types and some plant categorical data also suggested that some othergermplasm with C type phaseolin are distinguished from the major gene pools.     

Premelting at defects within bulk colloidal crystals

Premelting is the localized loss of crystalline order at surfaces and defects at temperatures below the bulk melting transition. It can be thought of as the nucleation of the melting process. Premelting has been observed at the surfaces of crystals but not within. We report observations of premelting at grain boundaries and dislocations within bulk colloidal crystals using real-time video microscopy. The crystals are equilibrium close-packed, three-dimensional colloidal structures made from thermally responsive microgel spheres. Particle tracking reveals increased disorder in crystalline regions bordering defects, the amount of which depends on the type of defect, distance from the defect, and particle volume fraction. Our observations suggest that interfacial free energy is the crucial parameter for premelting in colloidal and atomic-scale crystals.     

Analysis of methanogenic archaeal communities of rumen fluid and rumen particles from Korean black goats

Molecular diversity of methanogens in the rumen of Korean black goats was investigated with 16S rRNA gene clone libraries using methanogen‐specific primers. The libraries were composed of rumen fluid‐associated methanogens (FAM) and rumen particle‐associated methanogens (PAM) from rumen‐fistulated Korean black goats. Among the 141 clones of the FAM library, the sequences were mostly related to two phyla, the Methanobacteriaceae family (77.3%) and the Thermoplasmatales family (22.7%); and among the 68 clones of the PAM library, sequences were also mainly clustered in the two phyla, the Thermoplasmatales family (63.24%) and the Methanobacteriaceae family (35.29%). Most of the sequenced clones in the two libraries were closely related to uncultured methanogenic archaeon. Quantitative real‐time PCR revealed that PAM (8.97 log 10) had significantly higher (P < 0.01) density of methanogens by the methanogenic 16S rRNA gene copies than FAM (7.57 log 10). The two clone libraries also showed difference in Shannon index (FAM library 1.70 and PAM library 1.59) and Chao 1 estimator (FAM library 18 and PAM library 17 operational taxonomic units). Apparent differences found in the microbial community from the two 16S rRNA gene libraries could be a result of such factors as the chemical and physical nature of the target material surface, types or component of diets, the interaction between the methanogens and other microbes, and age of the experimental goats.     

Optimization of Compatible Mixed Cultures for Liquid State Bioconversion of Municipal Wastewater Sludge

The filamentous fungal strains such as Penicillium corylophilum (P), Aspergillus niger (A), Trichoderma harzianum (T) and Phanerochaete chrysosporium (PC) isolated from its relevant sources (wastewater, sewage sludge and sludge cake) were selected for compatible/incompatible mixed cultures. Six combinations of P. corylophilum and A. niger (P/A); P. corylophilum and P. chrysosporium (P/PC); P. corylophilum and T. harzianum (P/T); A. niger and T. harzianum (A/T); A. niger and P. chrysosporium (A/PC); T. harzianum and P. chrysosporium (T/PC) were used to evaluate their potential performance as compatible/incompatible mixed culture for the treatment of municipal wastewater sludge in a bioconversion process. The results of the present study showed that the combinations of P/A, P/PC and A/PC showed compatible growth and the rest of the combinations (P/T, A/T and T/PC) were incompatible cultures. A maximum production of dry biomass and dry filter cake were recorded in the compatible mixed culture of P. corylophilum and A. niger (P/A). A maximum reduction of COD (90%) and a decreased filtration time of treated sludge was observed in the case of P/A microbial mixed culture. The pH value was also affected by the fungal cultures. Effective results were observed by using microbial mixed culture after four days of treatment compared to other treatments (2 and 6 days).     

Detection of chromogranin A in the adrenal gland extracts of different animal species by an enzyme-linked immunosorbent assay using Thomsen-Friedenreich antigen-specific Amaranthus caudatus lectin

The reactivity of different lectins with crude chromogranin A (CgA) obtained from different animals, namely, cow, horse, dog, pig, and dolphin, was examined to identify lectin(s) that would be useful as coating reagent(s) in a sandwich enzyme-linked immunosorbent assay (ELISA). Of the different lectins studied, the Amaranthus caudatus lectin (ACA), which is specific for the Thomsen-Friedenreich (T)-antigen (Galβ1-3GalNAc), was found to react with the CgA from different animals by western blotting. Purified rabbit anti-bovine CgA antibody was also found to cross-react with the crude CgA preparations. On the basis of these findings, a sandwich ELISA was developed with ACA as the coating reagent and anti-bovine CgA antibody as the probing antibody. Using this method, concentration-dependent curves ranging from 0.003 μg/mL to 25 μg/mL and from 0.02 μg/mL to 25 μg/mL were obtained for bovine CgA and canine CgA, respectively. Similarly, concentration-dependent curves were obtained for the equine, swine, and dolphin crude CgA extracts. Thus, ACA is concluded to be a valuable reagent for CgA detection in crude extracts from different animal species, and for CgA isolation/purification.     

Guided bone regeneration with beta-tricalcium phosphate and poly L-lactide-co-glycolide-co-epsilon-caprolactone membrane in partial defects of canine humerus

This study was performed to evaluate the effect of beta-tricalcium phosphate and poly L-lactide-co-glycolide-co-epsilon-caprolactone (TCP/PLGC) membrane in the repair of partial bone defects in canine proximal humerus. Three adult mixed-breed dogs were used during the experimental period. The length of the defect was quarter of the full length of humerus, and width of the defect was quarter of middle diameter of the lateral aspect of humerus. The humeri of each dog were divided into treatment (TCP/PLGC) and control groups. The defect was covered with TCP/PLGC membrane in treatment group. To evaluate regeneration of the bone, computerized tomography (CT) and histopathologic examination were performed. The radiopaque lines were appeared at the original defect sites in TCP/PLGC group but below the original site in control at 4th week. Radiopacity and thickness of the defect sites, and radiopaque lines were more increased at 8th week than those of 4th week. Histopathologic findings revealed fibrous connective tissue migration into the defect and the migration inhibited the structure of new cortex to be placed in the original level in control whereas new cortex growth was found in the level of original line in TCP/PLGC group. However, the new cortical bone in the TCP/PLGC group was thinner and less organized than the adjacent intact cortex, and the amount of new cancellous bones were also scanty. The result suggested that TCP/PLGC membrane is a good guided bone regeneration material to restore the original morphology of humerus in partial defect.     

基于改进CA-Markov模型的山地城市边缘区土地利用变化模拟（英文）

山地都市边缘区土地利用处于深刻转型中,其变化模拟一直以来都是难点问题。现有的模拟方法如传统的CA-Markov模型等存在明显缺陷。该研究基于层次分析的多标准评价模型MCE引入传统的CA-Markov模型,改进传统模拟方法。在限制因素和限制因子适宜性评价基础上,结合实证区域2006,2011和2016年土地利用现状数据,引入改进的CA-Markov模型,模拟山地城市边缘区土地利用时空变化。首先是利用改进的模型与传统的模拟分别模拟2016年研究区域的土地利用变化;其次将2种方法获取的图像分别与实证区域的土地利用现状图进行精度分析,改进方法模拟精度明显高于传统方法精度;最后利用改进的方法和2016年现状数据,进一步模拟2030年实证区域的土地利用时空格局。结果表明：维持研究区现有的城镇化发展速度,到2030年研究区的耕地、林地、园地、水域、未利用地和农村居民点等将大幅减少,这对于研究区粮食安全、生态保护等造成较大威胁。改进的MCE-adjusted CA-Markov模型,相对于传统的CA-Markov模型,能较好地模拟山地城市边缘区土地利用时空格局变化。此外,讨论了研究结果对该区域国土空间规划编制的启示以及模型未来改进的方向等。