Phospholipid fatty acid composition of microbiota in the percolating water from a rice paddy microcosm

The microbiota in the percolating water from the plow layer soil in paddy fields was studied based on the composition of phospholipid fatty acids (PLFAs) in a pot experiment. The mean concentrations of PLFAs in the percolating water were 17±5 and 11±4 µg L^-1 in the planted and non-planted pots, respectively. The dominant PLFAs in the percolating water were 16: 0, 16: 1ω7c, 18: 1ω7, 18: 1ω9, il5: 0, and ail5: 0 PLFAs in both the planted and non-planted pots. The dominance percentage of 18: 3ω6c and 17: 1ω8 PLFAs increased at the late stage of rice growth in the planted pots. The percolating water from the planted pots contained in a higher percentage of straight mono-unsaturated PLFAs and a lower percentage of branched-chain PLFAs than that from the non-planted pots. Considerable differences in the PLFA composition in the percolating water were observed between the planted and non-planted treatments and with the duration of the growth period. Principal component analysis indicated that the microbiota in the percolating water was derived from the microbiota in the floodwater and in the plow layer soil. Cluster analysis showed that the similarity of the PLFA composition in the percolating water to the PLFA composition in the plow layer soil was higher than that in the floodwater. The stress factor that was estimated from the trans/cis ratio of 16: 1ω7 PLFA was 0.08±0.04 and 0.14±0.05 in the percolating water from the planted and non-planted pots, respectively, which indicated that the degree of stress on the microbiota in the percolating water from the planted pots was low in a similar way to the degree of stress on the microbiota in the floodwater, while the degree in the percolating water from the non-planted pots was similar to that in the plow layer soil, respectively.     

Influence of surface printing materials on the degradability of biodegradable plastic films in soil

Effect of surface printing on the biodegradability of plastic films was studied. Biodegradable films (polybutylene-succinate (PBS)) printed with four kinds of gravure inks were placed in soil for 1 year. The inks consisted of carbon black-pigment with four kinds of resins: poly-(ε-caprolactone) (PCL), nitrocellulose-polyamide blended resin (NT), polyvinyl chloride-vinyl acetate copolymer (V), and nitrocellulose (NC). Degradation of film specimens printed on one side and both sides as well as the control film without printing was monitored every 3 months by collecting sample specimens for the measurement of weight loss. No appreciable degradation was observed until 6 months after placement in soil for the control specimens and until 9 months for the printed specimens. And the degradation of the PCL- and NC-printed specimens with one-side printing and V-printed specimens with both-side printing was significantly slower than that of the control specimens without printing after 9-month placement at p < 0.05. Only after 12 months of placement, was the degradation significantly faster for the specimens printed on one side than for those printed on both sides except of the specimens printed with NC. There was no difference in biodegradability among PCL, NT, NC, and V resins. Specimens printed on both sides did not show any appreciable weight loss after 1 year in soil (percentage of maintenance of weight exceeding 98%). Microscopic observation indicated that the degradation mainly proceeded from the non-printed side to the printed side cross-sectionally.     

Microbial mineralization of organic nitrogen into nitrate to allow the use of organic fertilizer in hydroponics

Hydroponics is an excellent technique for the cultivation of vegetable crops and other plants, but organic fertilizers cannot be used in conventional hydroponic systems, which generally use only inorganic fertilizers, because organic compounds in the hydroponic solutions generally have phytotoxic effects that lead to poor plant growth. Few microorganisms are present in hydroponic solutions to mineralize the organic compounds into inorganic nutrients. In this article a novel and practical hydroponic culture method that uses microorganisms to degrade organic fertilizer in the hydroponic solution has been developed. Soil microorganisms were cultured by regulating the amounts of organic fertilizer and inoculum, with moderate aeration. The microorganisms mineralized organic nitrogen via ammonification and nitrification into nitrate at an efficiency of 97.6%. The culture solution containing the microorganisms was usable as a hydroponic solution, and organic fertilizer could be directly added to it during vegetable cultivation. Vegetables grew well in the organic hydroponic system. Organic hydroponics based on this method is therefore a practical tool for the utilization of organic sources of fertilizer.     

CHANGES IN FOLIAR AMMONIUM CONCENTRATIONS IN SUBSTRATE-GROWN STRAWBERRY

Strawberries (Fragaria × ananassa Duch. cv. Nyoho) grown in peat-based substrate often suffer interveinal chlorosis in their immature leaves 10–20 d after planting. Based on our previous results and observations from growing practice, we hypothesized that the cause of this phenomenon could be due to drastic changes in plant nitrogen (N) nutrition in strawberries just after planting into peat bags. To determine optimal sampling time, diurnal variations in foliar ammonium (NH₄)-N concentration were evaluated under greenhouse conditions. Results showed a broadly similar pattern of diurnal variation, with the rates increasing to a maximum at midday and decreasing steadily during the second-half of the light period. However, foliar NH₄-N concentration was higher under sunny than under cloudy or shaded light conditions. In the second part of this study, changes in foliar NH₄-N and in nitrate (NO₃)-N in petioles in relation to the occurrence of interveinal chlorosis were investigated. When the plants were supplied with 30 (control) or 50% ‘Ohtsuka A’ nutrient solution for two weeks after planting, foliar NH₄-N concentrations increased earlier than petiole NO₃-N concentrations, and reached their peak 8 and 10 days after planting in 50% (1.90 μmol g^?1 FW) and 30% (1.78 μmol g^?1 FW) treatment respectively. Interveinal chlorosis was observed in immature leaves in 50% treatment about 10 days after planting while there was no chlorotic symptom in control treatment. The absence of interveinal chlorosis in immature leaves in control plants, led to the conclusion that a high leaf NH₄-N concentration and related accumulation of NH₄-N play an important role in triggering interveinal chlorosis.     

Geographic distribution of Waxy gene SNPs and indels in foxtail millet, Setaria italica (L.) P. Beauv.

To elucidate diversity and evolution of the Waxy gene in foxtail millet, Setaria italica, we analyzed sequence polymorphism of Waxy gene in 83 foxtail millet landraces collected from various regions covering the entire geographical distribution of this millet in Europe and Asia. We found a unique geographic distribution pattern at the sequence level of gene haplotypes and also found a large diversity in East Asian landraces. We also found a higher degree of genetic polymorphism in a non-waxy phenotype than in other low amylose types, supporting the hypothesis that low amylose types recently originated from non-waxy type.     

Nitrogen nutrition,leaf resistance,and leaf photosynthetic rate of the rice plant

The evidence that indicates a close association between nitrogen nutrition and the Photosynthetic rate of single rice leaves (Table 1) shows that the photosynthetic rate is related to the nitrogen content on a dry weight basis or on a leaf area basis, Photosynthesis of single leaves can be analyzed in terms of a series of diffusion resistances, i.e., stomatal, mesophyll, and carboxylation (1, 3, 6). Nitrogen nutrition may affect either one of these or more than two at the same time. Nitrogen nutrition affects mainly the mesophyll resistance, and the stomatal resistance to a lesser extent, in cotton, beans, and maize (10) while it affects both the stomatal and mesophyll resistance in sugar beet (8).     

Mung bean trypsin inhibitor is effective in suppressing the degradation of myofibrillar proteins in the skeletal muscle of blue scad (Decapterus maruadsi)

Mung bean trypsin inhibitor (MBTI) of the Bowman-Birk family was purified to homogeneity with a molecular mass of approximately 9 kDa on tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and 8887.25 Da as determined by matrix-assisted laser desorption/ionization-quadrupole ion trap-time-of-flight mass spectrometry (MALDI-QIT-TOF MS). Using blue scad myofibrillar proteins as targets, it was found that, in the absence of MBTI, proteolysis of myofibrillar proteins, especially myosin heavy chain (MHC), could be identified after incubation at 55 °C for 2 h, while in the presence of MBTI, with a final concentration of 25 ng/mL, proteolysis of these proteins was greatly suppressed even after incubation for 3 h. Although cysteine proteinase inhibitor E-64 was also effective in preventing protein degradation, inhibitors for metallo- and asparatic proteinases did not reveal obvious inhibitory effects. Our present results strongly suggested that the naturally occurring legume bean seed protein MBTI can be used as an effective additive in preventing marine fish blue scad surimi gel softening, which is quite possibly caused by myofibril-bound serine proteinase (MBSP).     

Inheritance of gramine content in barley

The inheritance of gramine indole alkaloid was studied in F1 and F2 generations derived from crosses between wild ( Hordeum vulgare subsp. spontaneum) and cultivated ( H. vulgare subsp. vulgare) barley at adult stage in the field. The means of gramine content were very low in F1s and F2s in April and May. The ratio of progeny containing gramine to those without gramine (near zero or undetectable) fit a mono-genic or di-genic model in F2 generation. However, the content of gramine might be controlled by minor genes in the gramine-containing plants. The direction of dominance was toward lower gramine content. The averages of dominance ( h/d) in F1 and F2 ranged from partial to complete. Broad-sense heritabilities were high (0.70 to 0.77). The usefulness of hybrids for breeding aphid resistance and possibility increasing palatability of grazing pasture for sheep and cattle is discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Assessment of the decay risk of airborne wood-decay fungi III: decay risks at different sampling sites

The decay risk of airborne wood-decay fungi in the same volume of air was investigated by using an air sampler over the course of a year at three different sampling sites. Japanese cedar disks measuring 7.8 cm in diameter and about 3 mm in thickness, and with a moisture content of about 100 % were placed in a “BIOSAMP” air sampler and then exposed to 1000 l of air in the northern, central, and southwest parts of Japan. The exposed disks were incubated for 20 weeks in a damp container maintained at 26 ± 2 °C and degraded by fungi trapped on the disks. The decay risk was calculated from the mass loss during incubation, and the factors affecting the said risk were explored. The results showed that sampling sites apparently do not affect decay risk, even though the Scheffer’s climate indexes of the sites were quite different. The relation between the sampling month and decay risk reveals that decay risk remains virtually the same year-round. Relative humidity on a sampling day is one of the key factors affecting decay risk in sampling conducted at the central or southwest site. In contrast, no weather factors influenced decay risk at the northern sampling site.     

Spectrophotometrical characteristics in the near infrared region in beech (<Emphasis Type="Italic">Fagus crenata</Emphasis>) and pine (<Emphasis Type="Italic">Pinus densiflora</Emphasis>) litters at the various decomposing stages

We examined the relationships between the absorptional characteristics in the near infrared region and the chemical changes of decomposing beech (Fagus crenata) and pine (Pinus densiflora) litters. Spectra as well as the concentrations of chemical substances approached each other and converged with decomposition, although both initial characteristics differed markedly between beech and pine. This indicated that the fundamental chemical structures were almost the same, although their organochemical composition differed. Specific absorption bands for lignin, polysaccharide, and protein were identified at 2,140 and 1,670 nm, 2,270, 1,720, 1,590, and 1,216 nm, and 2,350 nm, respectively. Absorbance at 1,670 nm, peculiar band of aromatics, showed a positive correlation with lignin concentration, which suggested the relative increment of aromatics due to condensed lignin in decomposing litters. Absorbance at 2,140 nm, characterized as the C–H bond in HRC = CHR, showed a negative correlation with lignin concentration, which suggested the decrements of some structures such as side-chains in lignin polymers unrelated to aromatics. Absorbance at 2,270, 1,720, and 1,216 nm, specified to O–H/C–O/C–H bonds in saccharide, might reflect the change of polysaccharide during decomposition because they showed a positive correlation to polysaccharide concentration. In the same way, absorbance at 2,350 nm, identified to the C–H/CH₂ bonds in protein, showed a negative correlation to nitrogen concentration in decomposing litters, which might indicate that the C–H/CH₂ bonds in protein decreased with decomposition due to microbial consumption of carbon in protein. Our findings suggested the possibility that the spectral changes indicate the litter digestibility during decomposition and that also explain the compositional change in decomposing litters.