Virus Transport Experiments in a Sandy Aquifer

The occurrence of human enteric viruses in ground water has been well documented in the literature. Bacteriophages such as MS-2 and PRD1 have properties similar to pathogenic human viruses suggesting that bacteriophages can be used as proxies for virus transport. The objective of this study is to investigate a “worst case scenario” for virus transport in a ground water aquifer, i.e., sand and gravel aquifer under a forced-gradient, by using bacteriophages. Field studies have been conducted to trace large-scale (34 m) and small-scale (10 m) virus transport under natural- and forced-gradients through a sand and gravel aquifer at a ground water research site at the Texas A&M University. Virus transport was monitored under natural and forced-gradient conditions using MS-2 and PRD-1 as virus tracers and bromide as a conservative tracer. Results indicate virus and bromide transport to down-gradient monitoring wells in both the large- and small-scale field tests. During the tests conducted, MS-2 transport appears to exhibit little longitudinal dispersion, showing a narrow peak at the well nest 34 m down-gradient in 13 days which is 20 days before the bromide breakthroughs, indicating that bacteriophage transport through the aquifer was mainly by advective flow. Differences in tracer transport can be attributed to the heterogeneity of the sand and gravel aquifer at the site, different injection methods, different sampling methods, and different tracer properties. Heterogeneity of the aquifer would cause virus transport through preferential flow paths.     

Rapid detection of Macrobrachium rosenbergii nodavirus (MrNV) and extra small virus (XSV), the pathogenic agents of white tail disease of Macrobrachium rosenbergii (De Man), by loop-mediated isothermal amplification

A loop-mediated isothermal amplification (LAMP) procedure is described for rapid diagnosis of white tail disease, a viral disease caused by Macrobrachium rosenbergii nodavirus (MrNV) and extra small virus (XSV), in the giant freshwater prawn, Macrobrachium rosenbergii. This method was more sensitive than conventional RT-PCR for detecting the two viruses. A set of four primers, two outer and two inner, were designed for MrNV detection. An additional pair of loop primers was also used in an accelerated LAMP reaction for detection of XSV. Time and temperature conditions were optimized for detection of the two viruses. The LAMP reaction is highly suited for disease diagnosis in developing countries as amplification of DNA can be detected without the use of agarose gel electrophoresis, by the production of whitish precipitate of magnesium pyrophosphate as a by-product.     

Quantitative estimation of increased vascular permeability in acute inflammatory reaction in the chicken skin

An increase in vascular permeability was estimated quantitatively in acute inflammatory reaction in the chicken using passive cutaneous anaphylaxis as an experimental model. Dye exuded in the cutaneous lesion was extracted by formamide and measured spectrophotometrically. The technique, though time-consuming, worked well in the chicken. The results suggested that the method can be profitably utilised in studies relating to avian inflammation.     

Chromium-Resistant Bacterial Populations from a Site Heavily Contaminated with Hexavalent Chromium

Chromium-containing industrial effluents are primarily responsible for environmental contamination by toxic and highly mobile, hexavalent chromium. The dilution plate-count method, using media amended with Cr(VI) at concentrations ranging from 0 to 1000 mg L^-1, was used to compare the sizes of Cr(VI)-resistant bacterial populations from a soil contaminated with 25 100 mg kg^-1 total Cr [12 400 mg kg^-1 Cr(VI)] to those isolated from a slightly contaminated soil (99.6 mg kg^-1 total Cr) and two other soils without any history of Cr contamination. Bacterial populations resistant to 500 mg L^-1 Cr(VI) were isolated from all soils except the heavily contaminated soil. To determine whether Cr-resistant bacterial populations were indigenous to both the contaminated and the uncontaminated soils, enrichment cultures containing Cr(VI) at concentrations ranging from 0 to 1000 mg L^-1 were employed. Bacterial populations, as high as 10⁵ (colony forming units) CFU g^-1 soil, tolerant of 500 mg L^-1 Cr(VI) were isolated from all soils within 48 h of enrichment suggesting that the presence of aerobic Cr(VI)-resistant bacterial populations is unrelated to contamination levels or contamination history. However, identification of these resistant bacteria using fatty acid profiles was unsuccessful suggesting that these populations may have unique characteristics. Fungal colonies resistant to 1000 mg L^-1 Cr(VI) were routinely isolated from both uncontaminated and contaminated soils. The results suggest that Cr-resistant microorganisms may be present in soils, even those with no history of Cr contamination.     

D. Kofi Asante-Duah,Managing Contaminated Sites. Problem diagnosis and development of site restoration

Water, Air, &; Soil Pollution -     

Assessment of hydrogeochemical characteristics of groundwater in shrimp farming areas in coastal Tamil Nadu, India

Brackishwater aquaculture is basically farming in coastal region, and it utilizes the saline water from either sea or estuary or creek. Assessment of hydrogeochemisty of groundwater resources in shrimp farming areas is very much required not only for monitoring the shrimp farming impacts, but also to suggest better management strategies for the long-term sustainability of shrimp farming and integrated water resources management in coastal regions. Watershed-based assessment is ideal as watershed is a geohydrological unit, and it will give the realistic and cumulative effects more precisely. With this background, the present investigation was carried out to evaluate the geochemical process regulating groundwater quality in shrimp farming areas of coastal miniwatersheds of Vellar and Coleroon river, Cuddalore district, Tamil Nadu, along the east coast of India. Representative groundwater (29) samples from shallow aquifer (hand pump and open well) were collected periodically (June 2008, January 2009, April 2009 and July 2009) using the simple random sampling method and analyzed for various water quality parameters viz. pH, TDS, total hardness, alkalinity, cations (Ca⁺, Mg⁺, Na⁺) and anions (Cl^?, SO₄ ^?, NO₃ ^?, HCO₃ ^?). The groundwater data indicated that the HCO₃ was the dominant ion in the study area with sodium (Na > Ca > Mg) and bicarbonate (HCO₃ > Cl > SO₄) as the predominant cation and anion, respectively. The large variations in mean and standard deviation of ionic concentration suggest that the water chemistry in the study region was not homogenous and may be influenced by complex sources for the hydrogeochemical processes. The piper trilinear diagram depicts the status of the groundwater quality and also suggests that the cation exchange and mineral dissolution was responsible for this elevated ionic composition at some locations in the study area. The multivariate statistical analysis viz., principal component analysis and cluster analysis clearly elucidated that the groundwater quality in the area is mainly due to natural process and the shrimp farming is not an influencing factor.     

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