Association mapping reveals loci associated with multiple traits that affect grain yield and adaptation in soft winter wheat

Genome-wide association studies (GWAS) are useful to facilitate crop improvement via enhanced knowledge of marker-trait associations (MTA). A GWAS for grain yield (GY), yield components, and agronomic traits was conducted using a diverse panel of 239 soft red winter wheat (Triticum aestivum) genotypes evaluated across two growing seasons and eight site-years. Analysis of variance showed significant environment, genotype, and genotype-by-environment effects for GY and yield components. Narrow sense heritability of GY (h ²  = 0.48) was moderate compared to other traits including plant height (h ²  = 0.81) and kernel weight (h ²  = 0.77). There were 112 significant MTA (p < 0.0005) detected for eight measured traits using compressed mixed linear models and 5715 single nucleotide polymorphism markers. MTA for GY and agronomic traits coincided with previously reported QTL for winter and spring wheat. Highly significant MTA for GY showed an overall negative allelic effect for the minor allele, indicating selection against these alleles by breeders. Markers associated with multiple traits observed on chromosomes 1A, 2D, 3B, and 4B with positive minor effects serve as potential targets for marker assisted breeding to select for improvement of GY and related traits. Following marker validation, these multi-trait loci have the potential to be utilized for MAS to improve GY and adaptation of soft red winter wheat.     

Ciclosporin A therapy is associated with disturbances in glucose metabolism in dogs with atopic dermatitis

The effect of ciclosporin A (CsA) on glucose homeostasis was investigated in 16 dogs with atopic dermatitis by determining plasma glucose, serum fructosamine and insulin concentrations, and serial insulin and glucose concentrations following a glucagon stimulation test, before and 6 weeks after CsA therapy at 5 mg/kg once daily. All dogs completed the study. Following CsA treatment, the median serum fructosamine concentrations were significantly higher (pretreatment 227.5 μmol/L; post-treatment 246.5 μmol/L; P = 0.001; reference range 162-310 μmol/L). Based on analyses of the areas under concentration-time curves (AUC) pre- and post-CsA treatment, plasma glucose concentrations were significantly higher (AUC without baseline correction 31.0 mmol/L/min greater; P = 0.021) and serum insulin concentrations were significantly lower (AUC without baseline correction 217.1 μIU/mL/min lower; P = 0.044) following CsA treatment. Peak glucose concentrations after glucagon stimulation test were significantly higher following CsA treatment (10.75 versus 12.05 mmol/L; P = 0.021), but there was no significant difference in peak serum insulin (52.0 versus 35.0 μIU/mL; P = 0.052). There was a negative correlation between baseline uncorrected insulin AUC and trough serum log CsA concentrations (r = -0.70, P = 0.005). The administration of CsA to dogs with atopic dermatitis leads to disturbances in glucose homeostasis. The clinical significance of this is unclear, but it should be taken into account when considering CsA treatment in dogs that already have such impairments.     

Getting a grip on strangles: recent progress towards improved diagnostics and vaccines

'Strangles', caused by infection with the bacterium Streptococcus equi, remains one of the most commonly diagnosed and important infectious diseases of horses world-wide. This review discusses the diagnosis and pathogenesis of strangles with particular attention to the significance of persistent infections in disease transmission and the rapid progress now being made towards the development of effective preventative vaccines. It is now possible combine recent sequence data from the N-terminal region of the SeM protein and reassign the SeM alleles using the on-line database http://pubmlst.org/szooepidemicus/seM/. Hypotheses concerning the origin of this variation and the potential for its exploitation for the epidemiological analysis of outbreaks are proposed. Advances in understanding of the molecular evolution of S. equi highlight the role played by phage-mediated acquisition of virulence factors and suggest new avenues for prophylactic intervention.     

Evaluation of equine breeding farm characteristics as risk factors for development of Rhodococcus equi pneumonia in foals

OBJECTIVE: To identify farm characteristics as risk factors for the development of Rhodococcus equi pneumonia in foals. DESIGN: Prospective matched case-control study. ANIMALS: 2,764 foals on 64 equine breeding farms with 9,991 horses. PROCEDURE: During 1997, participating veterinarians completed paired data collection forms, 1 for a farm with > or = 1 foal with R equi pneumonia and 1 for an unaffected control farm. Matched data were compared by use of conditional logistic regression analysis. RESULTS: Farm characteristics found in bivariate analyses to be associated with increased risk for pneumonia caused by R equi in foals included > 200 farm acres, > or = 60 acres used in the husbandry of horses, > 160 horses, > or = 10 mares housed permanently on the farm (resident mares), > 17 foals, > 0.25 foals/acre, and the presence of transient mares (mares brought temporarily to the farm for breeding or foaling) and their foals. Affected farms were significantly more likely to be > 200 acres in size and have > or = 10 resident dam-foal pairs, whereas control farms were significantly more likely to have > or = 75% of their dam-foal pairs housed permanently on the farm. CONCLUSIONS AND CLINICAL RELEVANCE: Breeding farms with large acreage, a large number of mares and foals, high foal density, and a population of transient mares and foals are at high risk for foals developing pneumonia caused by R equi.     

Geochemical conditions in groundwater systems: Implications for the attenuation of agricultural nitrate

Nitrate resulting from nitrogen fertilisers used in Agriculture is a widespread contaminant of shallow groundwater and causes adverse effects on human, animal and ecosystem health. In order to evaluate the full extent of groundwater nitrate contamination, and how it might evolve in time, it is essential to understand controls on aquifer assimilative capacity. This level of understanding will also help to better target policies and incentives aimed at controlling the amount of nitrate entering downstream water systems.The potential for nitrate attenuation in groundwater was assessed by examining the concentration and distribution pattern of electron donors such as dissolved organic carbon (DOC), ferrous iron, and redox indicators such as dissolved oxygen (DO) and Eh in 57 monitoring bores on the lower Burdekin coastal floodplain, one of Queensland's and Australia's premier irrigation districts. Nitrate concentrations ranged from 0.1 to 14.4 mg/L NO₃-N but were mostly undetectable in bores close to the coast. Groundwater age dates suggest that while there are nitrate ‘hot spots’ in certain areas, some or most of the nitrate is being consumed on its way to the ocean. Low nitrate concentrations were coupled with high ferrous concentrations. The low DO concentrations (<2 mg/L) and high ferrous concentrations found in 55% of the bores indicate that redox conditions are suitable for nitrate attenuation by either denitrification or dissimilatory nitrate reduction to ammonium. The reducing environment may be associated with the high DOC concentrations (up to 82 mg C/L) found in these groundwaters. Furthermore, high levels of ferrous iron found in the Ayr area combined with the wide spread geographical distribution of DOC indicate that these areas have a high potential for sustaining geochemical processes that reduces nitrate levels. The distribution of geochemical indicators also suggests that the shallower depths (<15 m) of the groundwater systems have more potential for nitrate reduction than the deeper depths. The map identifying areas within the lower Burdekin with most potential for denitrification is a valuable first step in helping to understand and manage the fate of nitrate entering the groundwater.     

Effect of tissue culture explant source on sugarcane yield components

Clonal propagation of sugarcane(interspecific hybrids of Saccharum)is conducive to spread of systemicdiseases, such as ratoon stunting disease,caused by Leifsonia xyli subsp. xyli. This important disease iscontrolled by obtaining and plantinghealthy seed-cane. In Louisiana, commercialseed-cane initially produced through tissueculture is available to sugarcane farmersand is being widely planted. Long-termacceptability of this seed-cane productionmethod depends on the production of healthyplants that do not differ significantly inphenotypic and yield characteristics fromthe clones originally selected and releasedas commercial cultivars. To determinewhether tissue culture affects yield or itscomponents, three cultivars, CP 70-321, LCP85-384, and HoCP 85-845, were compared inthree successive crops initially plantedwith stalks from three sources: plantsderived from callus culture of the leafroll above the apical meristem, directregeneration from the apical meristem, andconventional bud propagation. Stalks ofplants derived from both explant sourceswere typical of seed-cane farmers wouldpurchase for planting that had beenpreviously rogued for phenotypic variantsand increased by bud propagation.Differences in yield components amongtissue culture explant sources and budpropagated cane only occurred in CP 70-321.Stalk diameter and stalk weight were lowerand stalk population was higher for plantsderived from leaf roll callus compared tobud propagated cane. Yield components weresimilar for plants derived from an apicalmeristem and bud propagation. Individualplant phenotypic variants resulting fromsomaclonal variation were not observed inany of the cultivars derived from eitherexplant source. In summary, genotype andexplant source affected persistent, uniformphenotypic variation resulting from tissueculture that changed some yield components. However, apical meristem culture wassuitable for production of seed-cane, assugarcane derived by meristem culture ofthree cultivars did not differsignificantly from the original germplasmfor any measured yield trait.     

Peroxidase-mediated oxidative cross-linking and its potential to modify mechanical properties in water-soluble polysaccharide extracts and cereal grain residues

Analysis of wheat bran and spent grain shows that concentrations of ferulate and diferulates offer considerable scope to modify the cross-linking of feruloylated polysaccharides and hence the mechanical properties of these residues. In solution ferulic acid (FA) can be readily polymerized by horseradish peroxidase, but when esterified to a polysaccharide, the profile of diferulates becomes restricted. This situation also exists in muro and suggests structural constraints may limit the availability of FA for cross-linking. At relatively low polysaccharide concentration, (approximately 3%), steric restrictions were apparent in gels prepared using isolated polysaccharides. Mechanical properties such as swelling also appear to be fixed at these relatively low polysaccharide concentrations. This limits the potential to modify mechanical properties in muro through oxidoreductase activity. To modify mechanical properties such treatments will need to focus on increasing the "flexibility" of the cell wall matrix and the accessibility of enzymes to the cell wall matrix.     

Characterization and distribution of phenolics in carrot cell walls

Carrot cell walls have been shown to contain significant quantities of esterified p-hydroxybenzoic acid, which is presumed to be esterified to cell wall polymers. The purpose of this study was to investigate the distribution of p-hydroxybenzoic acid and related phenolics among carrot cell wall polysaccharides. Cell wall material was prepared from fresh carrot root tissues and extracted sequentially with water, imidazole, cyclohexane- trans-1,2-diamine- N, N, N', N'-tetraacetate, Na 2CO 3, and KOH (0.5, 1, and 4 M) to leave a cellulose-rich residue. The fractions were analyzed for their carbohydrate and phenolic acid components. Selected soluble fractions were subfractionated further by graded precipitation in ethanol. The majority of the polymer fractions comprised pectic polysaccharides, with varying quantities of neutral sugars (arabinose and galactose). Hemicellulosic polymers were generally found only in the strong alkali extracts (4 M KOH). p-OH-benzoic acid was the predominant phenolic ester and was associated with most fractions analyzed; p-OH-benzaldehyde was also detected in the fractions at much lower levels. Principal components analysis of the chemical data indicated that the p-OH-benzoic acid was associated predominantly with the branched pectic polysaccharides, in contrast to the p-OH-benzaldehyde. The possible roles and functional properties of these phenolics are discussed.