Alternative methods in the development of pedotransfer functions for soil hydraulic characteristics

Soil hydraulic properties are needed in the modeling of water flow and solute movement in the vadose zone. Pedotransfer functions (PTFs) have received the attention of many researchers for indirect determination of hydraulic properties from basic soil properties as an alternative to direct measurement. The objective of this study was to compare the performance of cascade forward network (CFN), multiple-linear regression (MLR), and seemingly unrelated regression (SUR) methods using prediction capabilities of point and parametric PTFs developed by these methods. The point PTFs estimated field capacity (FC), permanent wilting point (PWP), available water capacity (AWC), and saturated hydraulic conductivity (Ks) and the parametric PTFs estimated the van Genuchten retention parameters. A total of 180 soil samples was extracted from the UNSODA database and divided into two groups as 135 for the development and 45 for the validation of the PTFs. The model performances were evaluated with three statistical tools: the maximum error (ME), the model efficiency (EF), and the D index (D) using the observed and predicted values of a given parameter. Despite the fact that the differences among the three methods in prediction accuracies of the point and parametric PTFs were not statistically significant (p > 0.05) except θ_r and α (p < 0.05) based on the ANOVA test, overall MLR and SUR were somewhat better than CFN in prediction of the point PTFs, whereas CFN performed better than the other two methods in prediction of the parametric PTFs. The F.F values of FC and θ_r for CFN, MLR, and SUR methods were 0.705. 0.805, 0.795 and 0.356, −0.290, −0.290, respectively, which refer to the best and worst predictions. Properties (Ks, θ_r, α) having some difficulty in prediction were better predicted by CFN and SUR methods, where these methods predict all hydraulic properties from basic soil properties simultaneously rather than individually as in MLR. This suggests that multivariate analysis using such functional relationships between hydraulic properties and basic soil properties can be utilized in developing more accurate point and parametric PTFs with less time and effort.     

Soil texture affects soil microbial and structural recovery during grassland restoration

Many biotic and abiotic factors influence recovery of soil communities following prolonged disturbance. We investigated the role of soil texture in the recovery of soil microbial community structure and changes in microbial stress, as indexed by phospholipid fatty acid (PLFA) profiles, using two chronosequences of grasslands restored from 0 to 19 years on silty clay loam and loamy fine sand soils in Nebraska, USA. All restorations were formerly cultivated fields seeded to native warm-season grasses through the USDA’s Conservation Reserve Program. Increases in many PLFA concentrations occurred across the silty clay loam chronosequence including total PLFA biomass, richness, fungi, arbuscular mycorrhizal fungi, Gram-positive bacteria, Gram-negative bacteria, and actinomycetes. Ratios of saturated:monounsaturated and iso:anteiso PLFAs decreased across the silty clay loam chronosequence indicating reduction in nutrient stress of the microbial community as grassland established. Multivariate analysis of entire PLFA profiles across the silty clay loam chronosequence showed recovery of microbial community structure on the trajectory toward native prairie. Conversely, no microbial groups exhibited a directional change across the loamy fine sand chronosequence. Changes in soil structure were also only observed across the silty clay loam chronosequence. Aggregate mean weighted diameter (MWD) exhibited an exponential rise to maximum resulting from an exponential rise to maximum in the proportion of large macroaggregates (>2000 μm) and exponential decay in microaggregates (<250 μm and >53 μm) and the silt and clay fraction (<53 μm). Across both chronosequences, MWD was highly correlated with total PLFA biomass and the biomass of many microbial groups. Strong correlations between many PLFA groups and the MWD of aggregates underscore the interdependence between the recovery of soil microbial communities and soil structure that may explain more variation than time for some soils (i.e., loamy fine sand). This study demonstrates that soil microbial responses to grassland restoration are modulated by soil texture with implications for estimating the true capacity of restoration efforts to rehabilitate ecosystem functions.     

Earthworm populations and growth rates related to long-term crop residue and tillage management

Conventional tillage creates soil physical conditions that may restrict earthworm movement and accelerate crop residue decomposition, thus reducing the food supply for earthworms. These negative impacts may be alleviated by retaining crop residues in agroecosystems. The objective of this study was to determine the effects of various tillage and crop residue management practices on earthworm populations in the field and earthworm growth under controlled conditions. Population assessments were conducted at two long-term (15+ years) experimental sites in Québec, Canada with three tillage systems: moldboard plow/disk harrow (CT), chisel plow or disk harrow (RT) and no tillage (NT), as well as two levels of crop residue inputs (high and low). Earthworm growth was assessed in intact soil cores from both sites. In the field, earthworm populations and biomass were greater with long-term NT than CT and RT practices, but not affected by crop residue management. Laboratory growth rates of Aporrectodea turgida (Eisen) in intact soil cores were affected by tillage and residue inputs, and were positively correlated with the soil organic C pool, suggesting that tillage and residue management practices that increase the soil organic C pool provide more organic substrates for earthworm growth. The highest earthworm growth rates were in soils from RT plots with high residue input, which differed from the response of earthworm populations to tillage and residue management treatments in the field. Our results suggest that tillage-induced disturbance probably has a greater impact than food availability on earthworm populations in cool, humid agroecosystems.     

Starving the soil of plant inputs for 50 years reduces abundance but not diversity of soil bacterial communities

If soil communities rely on plant-derived carbon, is biodiversity lost when this primary source is removed? Soil microbial and mesofaunal communities at the Rothamsted Highfield site were compared under a mixed grass sward, arable rotation and a section maintained as a bare-fallow for the past 50 years by regular tillage. Organic matter reserves have been degraded and microbial and mesofaunal numbers and mite diversity have declined in this unique bare-fallow site, where fresh carbon inputs have been drastically reduced. However, it supports a species-rich metabolically active bacterial community of similar diversity to that in soil maintained as grass sward. Thus in contrast to soil mesofauna, bacterial diversity (but not abundance) is apparently independent of plant inputs.     

Water stability of aggregates in subtropical and tropical soils (Georgia and China) and its relationships with the mineralogy and chemical properties

Water-stable aggregates isolated from three subtropical and one tropical soil (Western Georgia and China) were studied for their organic carbon, cation exchange capacity (CEC), specific surface area, magnetic susceptibility, and total chemical elements. The soils were also studied for their particle-size distribution, mineralogy, and nonsilicate Fe and Al oxides. Describe the water stability, three indices have been used: the content of water-stable macroaggregates (>0.25 mm), the mean weighted diameter of the aggregates, and the numerical aggregation index. The yellow-cinnamonic soil (China) was neutral, and the three other soils were acid. The soils were degraded with a low content of organic matter. The yellow-cinnamonic soil was characterized by the lowest water stability due to the predominantly vermiculite composition of the clay. The high water stability of the Oxisol structure was determined by the kaolinites and high content of oxides. In three out of the four soils studied, the hierarchical levels of the soil structure organization were defined; they were identified by the content of organic matter and the Ca + Mg (in Oxisols). Iron oxides mainly participated in the formation of micro-aggregates; Al and Mn contributed to the formation of macroaggregates. The water-stable aggregates acted as sorption geochemical barriers and accumulated Pb, Zn, Cd, Cs, and other trace elements up to concentrations exceeding their levels in the soil by 5 times and more. The highest correlations were obtained with CEC, Mn, and P rather than with organic carbon and Fe.     

Heavy metal pollution of urban soils

The chemical properties of urban soils (southeastern administrative district, Moscow) affecting the behavior of heavy metals were studied. The current heavy metal pollution level of the soils was assessed. The use of different approaches for the pollution standardization is shown to produce different results. The fractional composition of the metal compounds in the soils and the factors affecting its formation under technogenic pollution were investigated. In the district studied, the distribution of heavy metals by the fractions primarily depended on the chemical properties of the heavy metals themselves; the pollution level; and, to a lesser degree, on the soil properties. Zinc and cadmium were the most mobile metals in the soils studied.     

Nomenclature and genetic relationships of apples and pears from Terceira Island

Heritage apple (Malus domestica Borkh. hybrids) and pear (Pyrus communis L. hybrid) trees grow in villages throughout Terceira Island, Azores, Portugal. Some of these pears have different names but similar morphology. The objective of this study was to determine synonymy, homology, and phylogeny of apples and pears from Terceira and to examine potential relationships of the island pears with standard apples and pears of Portuguese or American descent. Nine apple microsatellite markers were used to determine genetic relationships. Distance- and parsimony-based cluster analysis grouped these genotypes into separate apple and pear clades. The Terceira apples were divided into two clades: the maçā and the reineta-reinette. Among the 17 heritage apple genotypes, seven unique accessions were identified and four groups of synonyms, or possibly clones, were detected including: ‘Reineta Agosto’ and ‘Reineta Verde’ from Altares; ‘Reineta Castanha’ and ‘Reineta Verde Miuda’; ‘Maçā Pêra,’ ‘Maçā Calhau’, ‘Pêro Branco’ from Salga and from Terra-Chā and ‘Maçā Marmelo’; and the five genotypes ‘Maçā Sao Joao’, ‘Malápio Rosa’, ‘Maçā Gaspar’, ‘Maçā Branca’ and ‘Maçā Pato’. In addition, two homonyms were detected. ‘Pêro Vermelho’ from Terra Chā was a separate genotype from a tree from Doze Ribeiras of the same name, but Pêro Branco from Terra Chā appears to be a clone that can be distinguished by an additional allele at CH1F07a from a tree with that name from Salga. One pair of apple clones, ‘Reineta Agosto’ and ‘Reineta Verde’ from Altares appear to be derived from an unreduced gamete of ‘Golden Delicious.’ Another apple genotype ‘Maçā Acida’ could be a sibling of the ‘Maçā Pêra’ clonal group. Other tested standard apples from the US genebank were unrelated to Terceira genotypes. Of the seven heritage pears, five unique genotypes and one pair of synonyms were detected. ‘Pêra Papo Pintassilgo’ from Raminho and ‘Pêra Vermelha’ from the nursery of Serviço de Desenvolvimento Agario da Terceira (SDAT) were synonyms. ‘Passans du Portugal’ was related to ‘Pêra Cabaca’ but other standard pears from the US genebank were unrelated to Terceira genotypes. Future studies will include additional apple and pear cultivars from other Islands of the Azores and continental Portugal, and wild Asian species to further explore genetic relationships.     

The effect of low-molecular-weight organic acids and inorganic phosphorus concentration on the determination of soil phosphorus by the molybdenum blue reaction

Low-molecular-weight organic acids play an important role in the mobilization of soil phosphorus (P). The molybdate blue colorimetric method, based on the formation of P molybdenum blue compound, is commonly used for analysis of phosphate in soil and environmental samples. However, some organic acids can act as a ligand to bond with molybdenum acid, which subsequently interfere with the colorimetric reaction. The recoveries of P were inhibited by the addition of oxalic (>2 mM) and citric acids (>3 mM) both in standard P solutions and soil extracts, but formic and maleic acids did not interfere with the P determination. The inhibition of oxalic and citric acids on P recovery remained even at higher level of P (up to 100 μg P 100 ml⁻¹) though such interferences decreased by increasing P concentration. Comparison between oxalic and citric acids revealed the more pronounced interference by the addition of oxalic acid. The results suggested that the interference of organic acids with P determination is related to the types of organic acids and the ratio of organic acid ligands to P anions in the solutions. Thus, analysis of P using the molybdate blue colorimetric method should be undertaken cautiously in the presence of relative strong ligands like oxalic and citric acids.     

Short-term population dynamics of ammonia oxidizing bacteria in an agricultural soil

Ammonia oxidizing bacteria (AOB) control the rate limiting step of nitrification, the conversion of ammonia (NH₄⁺) to nitrite (NO₂⁻). The AOB therefore have an important role to play in regulating soil nitrogen cycling. Tillage aerates the soil, stimulating rapid changes in soil N cycling and microbial communities. Here we report results of a study of the short term responses of AOB and net nitrification to simulated tillage and NH₄⁺ addition to soil. The intensively farmed vegetable soils of the Salinas Valley, California, provide the context for this study. These soils are cultivated frequently, receive large N fertilizer inputs and there are regional concerns about groundwater N concentrations. An understanding of N dynamics in these systems is therefore important. AOB population sizes were quantified using a real-time PCR approach. In a 15 day experiment AOB populations, increased rapidly following tillage and NH₄⁺ addition and persisted after the depletion of soil NH₄⁺. AOB population sizes increased to a similar degree, over a 1.5-day period, irrespective of the amount of NH₄⁺ supplied. These data suggest selection of an AOB community in this intensively farmed and C-limited soil, that rapidly uses NH₄⁺ that becomes available. These data also suggest that mineralization may play an especially important role in regulating AOB populations where NH₄⁺ pool sizes are very low. Methodological considerations in the study of soil AOB communities are also discussed.     

Salinity and sodicity effects on respiration and microbial biomass of soil

An understanding of the effects of salinity and sodicity on soil carbon (C) stocks and fluxes is critical in environmental management, as the areal extents of salinity and sodicity are predicted to increase. The effects of salinity and sodicity on the soil microbial biomass (SMB) and soil respiration were assessed over 12weeks under controlled conditions by subjecting disturbed soil samples from a vegetated soil profile to leaching with one of six salt solutions; a combination of low-salinity (0.5dSm⁻¹), mid-salinity (10dSm⁻¹), or high-salinity (30dSm⁻¹), with either low-sodicity (sodium adsorption ratio, SAR, 1), or high-sodicity (SAR 30) to give six treatments: control (low-salinity low-sodicity); low-salinity high-sodicity; mid-salinity low-sodicity; mid-salinity high-sodicity; high-salinity low-sodicity; and high-salinity high-sodicity. Soil respiration rate was highest (56–80mg CO₂-C kg⁻¹ soil) in the low-salinity treatments and lowest (1–5mg CO₂-C kg⁻¹ soil) in the mid-salinity treatments, while the SMB was highest in the high-salinity treatments (459–565mg kg⁻¹ soil) and lowest in the low-salinity treatments (158–172mg kg⁻¹ soil). This was attributed to increased substrate availability with high salt concentrations through either increased dispersion of soil aggregates or dissolution or hydrolysis of soil organic matter, which may offset some of the stresses placed on the microbial population from high salt concentrations. The apparent disparity in trends in respiration and the SMB may be due to an induced shift in the microbial population, from one dominated by more active microorganisms to one dominated by less active microorganisms.