The genomic sequence of the accidental pathogen Legionella pneumophila

We present the genomic sequence of Legionella pneumophila, the bacterial agent of Legionnaires' disease, a potentially fatal pneumonia acquired from aerosolized contaminated fresh water. The genome includes a 45-kilobase pair element that can exist in chromosomal and episomal forms, selective expansions of important gene families, genes for unexpected metabolic pathways, and previously unknown candidate virulence determinants. We highlight the genes that may account for Legionella's ability to survive in protozoa, mammalian macrophages, and inhospitable environmental niches and that may define new therapeutic targets.     

Different B cell populations mediate early and late memory during an endogenous immune response

Memory B cells formed in response to microbial antigens provide immunity to later infections; however, the inability to detect rare endogenous antigen-specific cells limits current understanding of this process. Using an antigen-based technique to enrich these cells, we found that immunization with a model protein generated B memory cells that expressed isotype-switched immunoglobulins (swIg) or retained IgM. The more numerous IgM(+) cells were longer lived than the swIg(+) cells. However, swIg(+) memory cells dominated the secondary response because of the capacity to become activated in the presence of neutralizing serum immunoglobulin. Thus, we propose that memory relies on swIg(+) cells until they disappear and serum immunoglobulin falls to a low level, in which case memory resides with durable IgM(+) reserves.     

Impacts of insect herbivores on rare plant populations

Population-level impacts of insect herbivory on rare and endangered plants are poorly understood, being frequently suggested but seldom quantified. We compiled 37 studies from the primary literature encompassing 35 rare plant species and at least 63 insect herbivore species, and assessed patterns in the effects of insect herbivores on rare plant populations and vital rates. Only three studies directly quantified effects of insect herbivory on population size or growth rate, with the vast majority instead extrapolating from vital rates to population size. Few studies (eight) studied herbivory experimentally, and feeding guilds other than seed predators have been relatively neglected. Estimates of population-level impacts vary extremely widely, but for many rare plants insect herbivores cause major reductions in survivorship or fecundity or can even drive local extinctions. Four studies documented positive (plant-) density dependence in insect attack, suggesting that herbivores may have a stabilizing influence on plant populations and thus may play a role in regulating rare plant population size. Most reported herbivores of rare plants are oligophagous or polyphagous, but monophagous herbivores of rare plants do exist, and there was no detectable difference in impact among specialization classes. Attack on rare plants by escaped biocontrol agents can sometimes have significant population-level effects, but such cases appear uncommon. Because insect herbivory can strongly suppress rare plant populations or vital rates, we need to know much more about what ecological and evolutionary factors determine the population-level impacts of insect herbivores. We suggest several ways in which the results of such research could inform conservation practices for rare plant species – for example, the possibility of different management regimes for plants under attack by monophagous, oligophagous, and polyphagous herbivores.     

Energy and Carbon Costs of Selected Cow-Calf Systems

Fossil fuel-derived inputs can increase cow-calf production per unit of land or labor but can raise financial and environmental concerns. Eleven US cow-calf systems from nine ecological regions in Iowa, South Dakota, Tennessee, and Texas were analyzed to determine quantities of energy used and carbon (C) emitted due to fossil fuel use (excluding emissions from soils and biota) and to determine how management and environment influenced those quantities. Total energy and C cost, calculated cow^?1 or ha^?1, were highly correlated (0.99). Energy use cow^?1 and ha^?1 varied greatly across systems, ranging from 3 000 to 12 600 megajoules (MJ) · cow^?1 · yr^?1 and from 260 to 20 800 MJ · ha^?1 · yr^?1. As stocking rate increased, MJ · cow^?1 increased at an increasing rate. Differences in quantity of fertilizer accounted for most variation in energy use. Fertilizer allowed higher stocking rates but reduced energy efficiency of liveweight marketed. Compared to intensive, higher stocking rate systems, rangeland systems based on native or naturalized forages used little or no fertilizer, but used more energy cow^?1 for crude protein (CP) supplementation, fencing, and pickup trucks. Across all systems, energy used to produce winter feed ranged from 0% to 46% of total energy. Northern systems used higher percentages of total energy for winter feed and fed for more days year^?1, but southern systems that included large amounts of bermudagrass (Cynodon dactylon L.) hay used the most MJ · cow^?1 for winter feed. Systems with high MJ · cow^?1 were vulnerable to shocks in energy prices. Reducing energy use and C emissions from cow-calf operations is possible, especially by reducing fertilizer and hay use, but would likely reduce productivity ha^?1. Forages with high nitrogen use efficiency, locally adapted plants and animals, and replacement of hay with unfertilized dormant forage and CP supplementation could reduce energy use.     

Use of pimobendan in 170 cats (2006–2010)

Hypothesis/ObjectivesTo describe the therapeutic use of pimobendan in cats, describe the patient population to which it was administered, document potential side effects and report the clinical course following administration of pimobendan in conjunction with standard heart failure therapy. It is hypothesized that cats with advanced heart disease including congestive heart failure from a variety of causes will tolerate pimobendan with a minimum of side effects when used in treatment in conjunction with a variety of other medications.Animals, materials and methodsOne hundred and seventy client owned cats with naturally occurring heart disease, one hundred and sixty four of which had congestive heart failure. Medical records were reviewed and owners and referring veterinarians were contacted for follow-up data. Data collected included pimobendan dose, other medications administered concurrently, data collected at physical examination, presence or absence of heart failure, adverse effects, classification of heart disease, echocardiographic data and survival time. The data were analyzed for significance between the initial visit and any follow-up visits.ResultsAll cats were treated with pimobendan. The median pimobendan dose was 0.24 mg/kg q 12 h. Pimobendan was used in combination with multiple concurrent medications including angiotensin converting enzyme inhibitors, diuretics and anti-thrombotics. Five cats (3.0%) had potential side effects associated with pimobendan. One cat (0.6%) had presumed side effects severe enough to discontinue pimobendan use. Median survival time for 164 cats with congestive heart failure after initiation of pimobendan was 151 days (range 1–870).ConclusionPimobendan appears to be well tolerated in cats with advanced heart disease when used with a variety of concurrent medications. Randomized controlled studies need to be performed to accurately assess whether it is efficacious for treatment of congestive heart failure in cats.     

Determination of polycyclic aromatic hydrocarbons in coffee brew using solid-phase extraction

The presence of polycyclic aromatic hydrocarbons (PAHs) in coffee has been reported and is suspected to be due to the degradation of coffee compounds during the roasting step. Due to the high toxicity of these compounds, among which benzo[a]pyrene is known to be the most carcinogenic, their presence in the coffee, especially the coffee brew that is directly ingested by the consumer, is of prime importance. However, due to the low solubility of these compounds, their concentrations are expected to be rather low. As a consequence, reliable and sensitive analytical methods are required. The aim of this study was to develop a reliable and fast analytical procedure to determine these organic micropollutants in coffee brew samples. PAHs were retained on a 0.5 g polystyrene-divinylbenzene cartridge before being eluted by a mixture of methanol/tetrahydrofuran (10:90 v/v), concentrated, and directly analyzed by reversed-phase high-performance liquid chromatography coupled to a fluorescence detector. Application to the determination of PAHs in several coffee brew samples is also given, with mean estimated concentrations in the range of 0-100 ng L(-1) for suspected benzo[b]fluoranthene and benzo[a]pyrene, whereas no fluoranthene could be detected. Tentative identification was made on the basis of UV spectra. However, identification of the suspected traces of PAHs could not be achieved due to matrix effects, so that the presence of coeluting compounds may not be excluded.     

Use of gyroscopic sensors for objective evaluation of trimming and shoeing to alter time between heel and toe lift-off at end of the stance phase in horses walking and trotting on a treadmill

OBJECTIVE: To determine whether a shoe with an axialcontoured lateral branch would induce greater lateral roll of the forelimb hoof during the time between heel and toe lift-off at end of the stance phase (breakover). Animals-10 adult horses. PROCEDURE: A gyroscopic transducer was placed on the hoof of the right forelimb and connected to a transmitter. Data on hoof angular velocity were collected as each horse walked and trotted on a treadmill before (treatment 1, no trim-no shoe) and after 2 treatments by a farrier (treatment 2, trim-standard shoe; and treatment 3, trim-contoured shoe). Data were converted to hoof angles by mathematical integration. Breakover duration was divided into 4 segments, and hoof angles in 3 planes (pitch, roll, and yaw) were calculated at the end of each segment. Multivariable ANOVA was performed to detect differences among treatments and gaits. RESULTS: Trimming and shoeing with a shoe with contoured lateral branches induced greater mean lateral roll to the hoof of 3.2 degrees and 2.5 degrees during the first half of breakover when trotting, compared with values for no trim-no shoe and trim-standard shoe, respectively. This effect dissipated during the second half of breakover. When horses walked, lateral roll during breakover was not significantly enhanced by use of this shoe. CONCLUSIONS AND CLINICAL RELEVANCE: A shoe with an axial-contoured lateral branch induced greater lateral roll during breakover in trotting horses, but change in orientation of the hoof was small and limited to the first half of breakover.     

Subtotal ostectomy of dorsal spinous processes performed in nine standing horses

OBJECTIVE: To describe and evaluate subtotal ostectomy of dorsal spinous processes (DSP) performed in standing horses. STUDY DESIGN: Retrospective study. SAMPLE POPULATION: Nine adult horses. METHODS: The diseased portions of the DSP were removed with the horses standing and sedated after infiltrating a local anesthetic agent around the affected DSP. Medical records of affected horses were reviewed to determine history, findings of physical and radiographic examination, surgical technique, postoperative complications, and outcome. RESULTS: Five horses had subtotal ostectomy of DSP because of osteomyelitis, and 4 because of impingement and/or fracture of DSP. Affected portions of DSP were removed safely and effectively, with no apparent discomfort to the horses; hemorrhage was minimal. CONCLUSIONS: Subtotal ostectomy of DSP can be performed safely in standing, conscious horses and the risks associated with general anesthesia are eliminated. Hemorrhage is minimal compared to that which occurs when the procedure is performed with horses anesthetized and in lateral recumbency. CLINICAL RELEVANCE: Access and visibility are better when subtotal ostectomy of the DSP is performed with the horse standing rather than anesthetized and in lateral recumbency. Performing subtotal ostectomy of diseased DSP with the horse standing avoids the expense and risks of general anesthesia.     

Detection and Quantification of Phytophthora ramorum from California Forests Using a Real-Time Polymerase Chain Reaction Assay

ABSTRACT The timely and accurate detection of pathogens is a critical aid in the study of the epidemiology and biology of plant diseases. In the case of regulated organisms, the availability of a sensitive and reliable assay is essential when trying to achieve early detection of the pathogen. We developed and tested a real-time, nested polymerase chain reaction (PCR) assay for the detection of Phytophthora ramorum, causal agent of sudden oak death. This technique then was implemented as part of a widespread environmental screen throughout California. The method here described is sensitive, detecting less than 12 fg of pathogen DNA, and is specific for P. ramorum when tested across 21 Phytophthora spp. Hundreds of symptomatic samples from 33 sites in 14 California counties were assayed, resulting in the discovery of 10 new host species and 23 infested areas, including 4 new counties. With the exception of a single host, PCR-based discovery of new hosts and infested areas always was confirmed by traditional pathogen isolations and inoculation studies. Nonetheless, molecular diagnostics were key in early pathogen detection, and steered the direction of further research on this newly discovered and generalist Phytophthora species.