Diversity in White Lupin (<Emphasis Type="Italic">Lupinus albus</Emphasis> L.) Landraces from Northwest Iberianplateau

All the accessions (35) of white lupin (Lupinus albus L.) landraces collected from northwest Iberian plateau and maintained at the Spanish germplasm collection (CRF of INIA), were studied with the general objective of assessing the biodiversity of these landraces and to ascertain their value as genetic resources for the development of germplasm adapted to the areas where they were collected with long and chilly winters. The characterization study comprised 51 qualitative and 50 quantitative characters. Quantitative parameters were analyzed by Principal Components Analysis (PCA). The 2-dimensional plot (49.3% of cumulative variability) formed a main group of accessions and 4 outliers (#1, #9, #27 and #28) separated in the first PC. The characters with a higher contribution to the first PC were inflorescence length, leaf petiole length and leaf central foliole area. The presence of alkaloids, the percentage of plants killed by soil borne fungal diseases, the phenology, the yield per plant and yield components were also assessed. Twenty six accessions (the main group in the PCA plot) showed high homogeneity, with the following highlights: bitterness, indeterminate growth habit, early ripeness and spring sowing with the exception of #18, in which seeding date is unknown and it had a later phenology. By contrast accessions #9 and #27 were bitter of autumn sowing with determinate growing habit and they had the longest values of primary inflorescence length and a later phenology when they were sown in spring. Average values for yield and yield components showed a broad range of variation between accessions. The main yield component was the number of pods per plant. Accession #22 had the highest mean seed mass, although this had not significant influence in yield. Accession #17 showed the highest yield and #1 the lowest. This last also had the lowest values of inflorescence length, leaf petiole length and leaf central foliole area. No significant differences of resistance to soil-borne fungi were found between accessions. The year had a significant effect in the phenology, yield and yield components except for number of seeds per pod. The studied material might be of interest for the development of spring sowing germplasm adapted to north Iberian peninsula.     

Acidification of Red Pine Forest Soil Due to Acidic Deposition in Chunchon, Korea

The effect of acidic deposition on the soil under red pine forest in Chunchon, Korea was investigated. Precipitation, stream water, and soil solution chemistry were monitored at the watershed from 1997 to 1998. Acidity of the open-bulk precipitation was often neutralized by large amounts of ammonia (NH₃) that might have originated from livestock farming and fertilization. Estimated elemental budget at the watershed showed a positive correlation between loss of base cations and proton (H⁺) production due to nitrogen transformation in soil (ΔH⁺ _NT: ([NH₄ ⁺]_in-[NH₄ ⁺]_out)- ([NO₃ ^?]_in-[NO₃ ^?]_out)). When ΔH⁺ _NT increased, concentrations of nitrate in soil solutions also increased. Consequently, pH values of soil solutions decreased, although ion exchange with base cations contributed to buffer reaction. Since acid buffering capacity of the red pine forest soil was small, it was concluded that the input of ammonium nitrogen enhanced nitrification in soil thus causing soil acidification represented by loss of base cations from the watershed.     

Evidence of Lower Productivity in Long Term Limed Lakes as Compared to Unlimed Lakes of Similar pH

Ecosystem development in lime-treated waters in Sweden has been followed since 1989 in a programme for integrated studies of the effects of liming acidified waters (ISELAW). Observations after prolonged liming (>10 y) indicate a phosphorus depletion in the limed lakes which contrasts to the increased phosphorus supply often following within the initial years after lime treatment. After prolonged liming, the levels of total phosphorus are lower as compared to neutral reference lakes at identical TOC, and the phosphorus/TOC -ratio is consequently lower in limed lakes. Depletion of dissolved inorganic nitrogen during the summer is also lower in limed as compared to neutral reference lakes. Phytoplankton biomass and species number also lower in the limed lakes as compared to unlimed neutral references. Furthermore the bacterial number per unit TOC is lower in the long term limed lakes, possibly as a result of phosphorus limitation. As to the higher trophic levels, the benthic soft-bottom fauna of limed lakes (specifically the sublittoral fauna) is poorer in terms of species diversity and abundance. Also fish community composition indicates lower productivity in the limed lakes. Taken together there is thus evidence that the long term limed lakes have a lower trophic level than reference lakes.     

Can the arbuscular mycorrhizal fungus Glomus intraradices actively mobilize P from rock phosphates?

Plants colonized by arbuscular mycorrhizal (AM) fungi have been shown to respond positively to the application of insoluble forms of inorganic phosphorus (P) such as rock phosphates (RPs). The mechanism(s) underlying such responses remain(s) unknown and although it has been hypothesized, there is no experimental support for the production of chelating agents by AM fungal hyphae. Here we investigate whether AM fungi can solubilize P from RPs and transfer it to plant roots. Using root-organ cultures of Daucus carrota L. inoculated or not with Glomus intraradices Schenk & Smith and containing P from different RP sources, we predicted that: (1) roots inoculated with G. intraradices would take up more P than those uninoculated; that (2) the amount of P taken up by roots through G. intraradices would be positively correlated with the RP reactivity; and that (3) G. intraradices would have access to RP through localized alterations of pH and/or by the production of organic acid anions that may act as chelating agents. The RP reactivity was positively correlated with P uptake. However, mycorrhizal roots grew initially slower and did not respond differently to any P treatment than those uninoculated. There was no evidence of localized changes in pH in proximity of G. intraradices hyphae, indicating that responses to RP by mycorrhizal plants observed in previous studies do not appear to result from the release of H⁺ ions alone or in combination with organic acid anions.     

Evaluating estimators of the numbers of females with cubs-of-the-year in the yellowstone grizzly bear population

Current management of the grizzly bear (Ursus arctos) population in Yellowstone National Park and surrounding areas requires annual estimation of the number of adult female bears with cubs-of-the-year. We examined the performance of nine estimators of population size via simulation. Data were simulated using two methods for different combinations of population size, sample size, and coefficient of variation of individual sighting probabilities. We show that the coefficient of variation does not, by itself, adequately describe the effects of capture heterogeneity, because two different distributions of capture probabilities can have the same coefficient of variation. All estimators produced biased estimates of population size with bias decreasing as effort in creased. Based on the simulation results we recommend the Chao estimator for model M _h be used to estimate the number of the female bears with cubs of the year; however, the estimator of Chao and Shen may also be useful depending on the goals of the research.     

The simultaneous analysis of mixed discrete and continuous outcomes using nonlinear threshold models

Mixed discrete and continuous outcomes are commonly measured on each experimental unit in dose-response studies in toxicology. The dose-response relationships for these outcomes often have dose thresholds and nonlinear patterns. In addition, the endpoints are typically correlated, and a statistical analysis that incorporates the association may result in improved precision. We propose an extension of the generalized estimating equation (GEE) methodology to simultaneously analyze binary, count, and continuous outcomes with nonlinear threshold models that incorporates the intra-subject correlation. The methodology uses a quasi-likelihood framework and a working correlation matrix, and is appropriate when the marginal expectation of each outcome is of primary interest and the correlation between endpoints is a nuisance parameter. Because the derivatives of threshold models are not continuous at each point of the parameter space, we describe the necessary modifications that result in asymptotically normal and consistent estimators. Using dose-response data from a neurotoxicity experiment, the methodology is illustrated by analyzing five outcomes of mixed type with nonlinear threshold models. In this example, the incorporation of the intra-subject correlation resulted in decreased standard errors for the threshold parameters.     

Effects of nitrogen fertilizer application rates on nitrate nitrogen distribution in saline soil in the Hai River Basin,China

Background and Objectives  

Soil nitrate nitrogen (NO₃ ⁻-N) accumulation is related closely to NO₃ ⁻ leaching, which is an important issue in groundwater pollution, especially in intensive agricultural areas with saline soils where volumes of water are used in irrigation to avoid salt accumulation in the root zone. However, in the saline environment in Hai River Basin, China, the importance of detailed research into NO₃ ⁻-N distribution in the root zone has not been adequately recognized. Considering the impacts of eco-environmental system N and crop production, the present study aimed at contributing to an understanding of the effects of N application rate on soil NO₃ ⁻-N distribution, NO₃ ⁻-N residue, N loss, and maize (Zea mays L.) yield in this region.     

Large-sample hypothesis tests for stratified group-testing data

Insect-vectored plant diseases impact the agricultural community each year by affecting the economic value, the quantity, and the quality of crops. Controlling the spread of disease is an important area in risk assessment, and understanding the dynamics of vector populations helps researchers to develop effective treatments. In this article, we consider an experimental design commonly used by researchers who study plant disease and examine large-sample, likelihood-based hypothesis tests that can be used to characterize disease-transmission behavior in a stratified population. Small-sample size and power results along with design considerations are provided. We illustrate our testing procedures using two real data examples and provide recommendations for plant-disease researchers in the field.     

Classification of Ilex species based on metabolomic fingerprinting using nuclear magnetic resonance and multivariate data analysis

The metabolomic analysis of 11 Ilex species, I. argentina, I. brasiliensis, I. brevicuspis, I. dumosavar. dumosa, I. dumosa var. guaranina, I. integerrima, I. microdonta, I. paraguariensis var. paraguariensis, I. pseudobuxus, I. taubertiana, and I. theezans, was carried out by NMR spectroscopy and multivariate data analysis. The analysis using principal component analysis and classification of the (1)H NMR spectra showed a clear discrimination of those samples based on the metabolites present in the organic and aqueous fractions. The major metabolites that contribute to the discrimination are arbutin, caffeine, phenylpropanoids, and theobromine. Among those metabolites, arbutin, which has not been reported yet as a constituent of Ilex species, was found to be a biomarker for I. argentina,I. brasiliensis, I. brevicuspis, I. integerrima, I. microdonta, I. pseudobuxus, I. taubertiana, and I. theezans. This reliable method based on the determination of a large number of metabolites makes the chemotaxonomical analysis of Ilex species possible.     

Color characteristics of monascus pigments derived by fermentation with various amino acids

Various pigment colors were produced by Monascus fermentations with separate addition of 20 amino acids. The color characteristics and structures of the pigment derivatives were investigated. When each amino acid was added to the fermentation broth as a precursor, pigment extracts with different hue and chroma values were obtained depending on the content ratios of yellow, orange, and red colors in the fermentation broth. The yellow and orange pigments were identical regardless of amino acid addition. The red compounds varied on the basis of the type of amino acid added. LC-MS and (1)H and (13)C NMR structural analyses confirmed that the derivative pigments contained the moieties of the added amino acids. L, a, and b values of the CIELAB color system for the derivative pigments were measured. Values of hue and chroma were then calculated. The colors of the derivative pigments were in the range of orangish red to violet red. The hydrophilicities/hydrophobicities of the derivative pigments could be predicted from their log P values, which were estimated using computer programs.